Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.9e-129 466.5 354 100.0
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 7.3e-41 172.2 352 58.5
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 8.3e-29 132.1 188 46.3
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.2e-24 118.2 186 45.7
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 3.1e-23 113.6 189 44.4
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 1.5e-22 111.3 204 45.1
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.8e-22 109.4 84 64.3
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 1.3e-21 108.2 168 40.5
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 6.4e-21 105.9 113 53.1
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 8.4e-21 105.5 116 47.4
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.4e-21 105.5 116 47.4
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 1.1e-20 105.1 120 49.2
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-20 105.1 132 47.0
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 1.1e-20 105.1 118 49.2
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.1e-20 105.1 120 47.5
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.4e-20 104.8 126 44.4
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 1.4e-20 104.8 160 41.9
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 1.4e-20 104.8 161 42.2
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 1.9e-20 104.4 125 44.8
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 1.9e-20 104.4 125 44.8
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 1.9e-20 104.4 168 39.9
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 1.9e-20 104.4 118 48.3
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 1.9e-20 104.4 134 46.3
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 2.4e-20 104.0 166 41.0
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 2.4e-20 104.0 159 40.9
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 3.2e-20 103.6 118 47.5
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 3.2e-20 103.6 173 38.7
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 4.2e-20 103.2 125 44.8
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 4.2e-20 103.2 160 40.0
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 5.4e-20 102.8 200 42.5
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 5.4e-20 102.8 161 42.2
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 5.4e-20 102.8 118 48.3
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 7.1e-20 102.4 170 39.4
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 7.1e-20 102.4 134 44.8
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 7.1e-20 102.4 127 44.1
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 7.1e-20 102.4 161 41.0
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 9.2e-20 102.1 172 39.5
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 9.2e-20 102.1 161 39.1
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 9.2e-20 102.1 192 43.8
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 1.2e-19 101.7 160 40.0
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 1.2e-19 101.7 159 41.5
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 1.2e-19 101.7 111 50.5
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 1.2e-19 101.7 120 45.8
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.6e-19 101.3 200 42.0
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.6e-19 101.3 118 44.9
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 1.6e-19 101.3 118 47.5
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.6e-19 101.3 120 45.0
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 1.6e-19 101.3 126 45.2
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 2.1e-19 100.9 120 47.5
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 2.1e-19 100.9 118 47.5
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 2.7e-19 100.5 118 47.5
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 3.5e-19 100.1 111 50.5
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 3.5e-19 100.1 120 45.8
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 4.6e-19 99.8 120 45.8
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 4.6e-19 99.8 125 47.2
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 4.6e-19 99.8 118 48.3
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 4.6e-19 99.8 118 45.8
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 4.6e-19 99.8 120 45.0
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 4.6e-19 99.8 192 43.8
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 4.6e-19 99.8 116 47.4
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 4.6e-19 99.8 168 39.9
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 6.0e-19 99.4 120 43.3
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 6.0e-19 99.4 111 50.5
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 6.0e-19 99.4 111 51.4
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.8e-19 99.0 113 49.6
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 1.0e-18 98.6 124 43.5
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 1.0e-18 98.6 120 44.2
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 1.0e-18 98.6 126 45.2
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.0e-18 98.6 134 44.0
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.3e-18 98.2 118 44.9
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 1.3e-18 98.2 195 43.6
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 1.7e-18 97.8 171 36.8
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 1.7e-18 97.8 170 38.2
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.7e-18 97.8 174 41.4
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 2.3e-18 97.4 203 42.9
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.3e-18 97.4 134 44.0
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 2.3e-18 97.4 197 35.5
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 2.3e-18 97.4 111 50.5
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 3.0e-18 97.1 118 48.3
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 3.0e-18 97.1 144 43.1
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 3.9e-18 96.7 160 40.0
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 3.9e-18 96.7 162 38.3
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 5.1e-18 96.3 122 45.1
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 6.6e-18 95.9 120 45.8
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 6.6e-18 95.9 160 41.2
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.1e-17 95.1 149 42.3
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 1.5e-17 94.7 104 49.0
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.5e-17 94.7 93 57.0
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.9e-17 94.4 108 49.1
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 2.5e-17 94.0 200 42.0
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.5e-17 94.0 114 47.4
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 3.3e-17 93.6 196 44.9
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 3.3e-17 93.6 196 44.9
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 4.3e-17 93.2 151 39.1
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 7.3e-17 92.4 123 43.9
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 7.3e-17 92.4 93 55.9
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 9.6e-17 92.0 115 42.6
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 1.2e-16 91.7 131 43.5
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 1.2e-16 91.7 100 51.0
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 1.2e-16 91.7 203 42.4
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.1e-16 90.9 102 49.0
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 2.1e-16 90.9 123 44.7
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.1e-16 90.9 97 52.6
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 2.8e-16 90.5 144 41.0
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 2.8e-16 90.5 161 37.3
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 3.6e-16 90.1 197 43.1
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 3.6e-16 90.1 196 43.9
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 4.7e-16 89.7 133 45.1
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 4.7e-16 89.7 161 37.9
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 6.2e-16 89.4 130 42.3
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 8.1e-16 89.0 128 43.8
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 1.1e-15 88.6 202 42.1
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 1.1e-15 88.6 138 39.9
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.4e-15 88.2 125 44.8
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 1.4e-15 88.2 107 49.5
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 3.1e-15 87.0 163 39.3
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 3.1e-15 87.0 111 45.9
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 4.0e-15 86.7 104 46.2
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.3e-15 86.3 173 35.8
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-14 84.7 104 50.0
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.0e-14 84.3 147 40.8
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.0e-14 84.3 175 35.4
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.0e-14 84.3 112 42.0
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 2.6e-14 84.0 96 49.0
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.4e-14 83.6 146 37.7
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.4e-14 83.6 96 49.0
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 7.6e-14 82.4 146 37.7
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.3e-13 81.6 151 39.7
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 1.7e-13 81.3 73 52.1
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 8.4e-13 79.0 116 37.1
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 8.4e-13 79.0 116 38.8
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 1.4e-12 78.2 90 50.0
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 2.4e-12 77.4 161 35.4
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 2.4e-12 77.4 130 36.2
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 4.2e-12 76.6 90 48.9
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 4.2e-12 76.6 116 42.2
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 5.4e-12 76.3 117 41.0
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 7.1e-12 75.9 115 40.0
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-11 75.1 119 40.3
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 1.2e-11 75.1 112 36.6
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 2.7e-11 73.9 81 44.4
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 3.5e-11 73.6 73 47.9
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 3.5e-11 73.6 119 39.5
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 4.6e-11 73.2 97 44.3
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 6.0e-11 72.8 121 40.5
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 2.3e-10 70.9 58 58.6
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 3.9e-10 70.1 100 45.0
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 4.3e-09 66.6 76 51.3
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 9.6e-09 65.5 61 55.7
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 9.6e-09 65.5 47 61.7
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.3e-08 65.1 106 40.6
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 4.8e-08 63.2 79 46.8
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 6.2e-08 62.8 116 38.8
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 3.1e-07 60.5 70 45.7
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 5.3e-07 59.7 72 48.6
FAN13G2151 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.9e-07 59.3 73 46.6
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 6.9e-07 59.3 90 40.0
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 1.2e-06 58.5 90 41.1
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 2.0e-06 57.8 59 42.4
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.0e-06 57.8 59 42.4


User provided reference genes

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