Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 0.0e+00 1080.9 546 100.0
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.4e-245 852.8 550 80.0
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 2.0e-186 656.4 465 68.8
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 9.7e-186 654.1 484 68.0
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.8e-184 649.8 431 72.9
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 7.0e-184 647.9 465 68.4
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 7.0e-184 647.9 434 72.6
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 2.7e-183 646.0 465 68.6
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 2.7e-183 646.0 451 69.8
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 4.5e-183 645.2 458 69.7
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 1.3e-182 643.7 461 69.0
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.3e-182 643.7 442 69.7
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 5.0e-182 641.7 428 72.9
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 5.0e-182 641.7 432 71.5
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 5.0e-182 641.7 446 69.1
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 8.5e-182 641.0 448 71.2
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 8.5e-182 641.0 434 71.7
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.5e-181 640.2 432 70.6
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.9e-181 639.8 432 70.6
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 1.9e-181 639.8 464 68.3
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 2.5e-181 639.4 434 73.0
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 2.5e-181 639.4 481 67.2
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 4.2e-181 638.6 465 67.7
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 4.2e-181 638.6 469 68.0
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 4.2e-181 638.6 432 70.6
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 5.5e-181 638.3 434 70.7
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 7.2e-181 637.9 453 68.9
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 7.2e-181 637.9 464 69.0
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 9.4e-181 637.5 477 66.2
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 9.4e-181 637.5 438 70.5
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 9.4e-181 637.5 430 72.3
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 9.4e-181 637.5 463 67.0
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 9.4e-181 637.5 448 70.5
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.6e-180 636.7 431 71.5
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 2.1e-180 636.3 464 67.2
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 2.1e-180 636.3 444 69.8
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 2.1e-180 636.3 439 70.4
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 2.1e-180 636.3 432 71.1
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 3.6e-180 635.6 439 70.6
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 4.7e-180 635.2 464 67.9
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 4.7e-180 635.2 460 67.0
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 6.1e-180 634.8 433 70.2
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 6.1e-180 634.8 473 66.0
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 8.0e-180 634.4 436 71.3
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 1.0e-179 634.0 437 70.9
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 1.4e-179 633.6 432 69.9
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.8e-179 633.3 477 65.0
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 2.3e-179 632.9 431 71.2
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 4.0e-179 632.1 443 70.0
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 4.0e-179 632.1 432 70.1
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 5.2e-179 631.7 464 66.6
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 5.2e-179 631.7 454 68.5
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 6.8e-179 631.3 453 67.8
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 8.8e-179 630.9 428 71.0
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 8.8e-179 630.9 435 70.8
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 8.8e-179 630.9 445 69.9
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 8.8e-179 630.9 486 65.8
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 1.2e-178 630.6 432 70.6
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 1.2e-178 630.6 434 70.5
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.5e-178 630.2 428 70.3
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.0e-178 629.8 516 61.6
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.0e-178 629.8 479 66.2
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.6e-178 629.4 445 69.7
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 3.4e-178 629.0 447 69.6
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 3.4e-178 629.0 425 71.8
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 3.4e-178 629.0 425 71.8
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 5.7e-178 628.2 438 68.5
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 5.7e-178 628.2 433 70.0
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 5.7e-178 628.2 428 70.1
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 7.5e-178 627.9 428 70.8
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 9.8e-178 627.5 530 61.1
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 9.8e-178 627.5 430 70.9
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 1.3e-177 627.1 438 69.4
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 1.7e-177 626.7 422 70.9
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.2e-177 626.3 430 71.2
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.8e-177 625.9 428 70.3
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 4.8e-177 625.2 456 68.4
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 4.8e-177 625.2 437 70.3
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 1.4e-176 623.6 432 70.1
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 2.4e-176 622.9 424 70.5
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 2.4e-176 622.9 424 70.8
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 2.4e-176 622.9 424 70.8
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 2.4e-176 622.9 424 71.2
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 3.1e-176 622.5 420 71.2
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 7.0e-176 621.3 480 65.2
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 7.0e-176 621.3 446 68.4
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 1.2e-175 620.5 438 68.7
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 2.7e-175 619.4 448 68.3
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 4.5e-175 618.6 451 67.8
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 5.9e-175 618.2 424 70.3
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 2.2e-174 616.3 428 70.1
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.8e-174 615.5 424 71.5
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 3.8e-174 615.5 422 70.4
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 5.0e-174 615.1 426 69.5
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 6.5e-174 614.8 543 60.4
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 8.5e-174 614.4 424 70.3
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 8.5e-174 614.4 434 68.9
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 1.5e-173 613.6 418 70.1
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.9e-173 613.2 418 70.1
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 3.2e-173 612.5 425 70.4
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 5.5e-173 611.7 456 65.8
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 7.2e-173 611.3 424 69.6
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-172 610.5 441 67.6
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 2.1e-172 609.8 424 70.8
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.8e-172 609.4 424 69.3
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 4.7e-172 608.6 422 69.2
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.4e-171 607.1 512 62.5
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.8e-171 606.7 424 68.6
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.5e-170 603.6 443 66.8
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 3.4e-170 602.4 473 63.6
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 1.7e-169 600.1 427 69.3
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 3.5e-167 592.4 441 67.1
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 7.8e-167 591.3 447 65.5
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 2.3e-166 589.7 441 66.9
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.0e-163 580.9 403 70.2
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 4.1e-160 568.9 392 70.7
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 5.9e-159 565.1 518 56.8
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.9e-157 560.1 443 63.0
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.1e-147 526.2 369 69.4
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 5.4e-144 515.4 432 60.4
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 4.3e-141 505.8 468 56.6
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.3e-137 494.2 431 59.6
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 3.5e-135 486.1 324 71.9
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.6e-132 477.2 309 77.0
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 1.7e-129 467.2 324 71.6
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.9e-129 466.5 302 74.8
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 1.0e-126 458.0 314 72.3
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 9.0e-123 444.9 329 66.6
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.4e-120 436.8 300 74.0
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 9.0e-115 418.3 427 53.4
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.5e-111 406.4 300 69.7
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 4.0e-107 392.9 276 68.5
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.8e-106 389.0 257 74.3
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.0e-102 376.7 431 45.7
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.7e-92 344.4 439 42.4
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 2.0e-85 320.9 242 66.9
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.6e-69 267.3 354 41.5
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.7e-61 239.6 173 61.8
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 5.6e-48 196.4 188 52.7
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.0e-46 190.7 177 59.3
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.6e-39 167.2 131 58.0
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 1.4e-38 165.2 120 68.3
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.1e-35 155.6 154 53.2
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 1.1e-35 155.6 120 60.8
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.2e-30 136.7 132 49.2
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 5.8e-29 133.3 90 73.3
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 8.6e-25 119.4 79 69.6
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 8.6e-25 119.4 87 66.7
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 8.6e-25 119.4 87 66.7
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 2.5e-24 117.9 79 69.6
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 9.5e-24 115.9 138 44.9
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 9.5e-24 115.9 83 66.3
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 9.5e-24 115.9 79 68.4
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 4.7e-23 113.6 76 68.4
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 1.5e-21 108.6 258 31.0
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 2.9e-20 104.4 77 62.3
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 8.4e-20 102.8 75 65.3
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 8.4e-20 102.8 75 65.3
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 2.4e-19 101.3 73 65.8
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 6.2e-15 86.7 61 67.2
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 1.2e-13 82.4 82 53.7


User provided reference genes

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