Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 6.5e-134 480.7 239 100.0
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 2.5e-85 319.3 236 63.6
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 8.6e-78 294.3 242 56.2
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 3.6e-68 262.3 254 50.0
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.2e-63 247.3 229 51.5
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 4.6e-47 192.2 213 42.3
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.7e-46 190.3 230 39.1
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 6.6e-46 188.3 230 39.6
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 3.1e-43 179.5 229 37.6
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 4.0e-43 179.1 232 35.3
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 9.0e-43 177.9 230 36.1
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.2e-42 177.6 230 38.3
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.0e-42 176.8 206 41.3
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.6e-42 176.4 232 38.4
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 2.6e-42 176.4 210 40.0
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 3.4e-42 176.0 230 37.0
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 4.4e-42 175.6 230 37.0
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 7.6e-42 174.9 239 36.4
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.3e-41 174.1 216 37.5
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.2e-41 173.3 217 35.9
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.2e-41 173.3 233 35.2
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.9e-41 172.9 206 39.3
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 3.8e-41 172.6 230 37.4
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 4.9e-41 172.2 206 38.8
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 4.9e-41 172.2 229 36.2
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 8.4e-41 171.4 215 38.1
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 8.4e-41 171.4 237 35.4
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 8.4e-41 171.4 239 34.3
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.4e-40 170.6 232 34.1
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.4e-40 170.6 230 36.1
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.4e-40 170.6 217 38.7
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.9e-40 170.2 217 38.7
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.4e-40 169.9 212 38.7
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.4e-40 169.9 217 38.2
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.2e-40 169.5 237 35.4
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.2e-40 169.5 230 36.1
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.2e-40 169.1 217 37.3
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 5.4e-40 168.7 217 38.2
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.4e-40 168.7 216 37.5
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.4e-40 168.7 216 37.5
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.4e-40 168.7 216 37.5
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 9.3e-40 167.9 216 37.5
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.2e-39 167.5 229 35.4
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.2e-39 167.5 230 33.5
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-39 167.5 216 37.0
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.6e-39 167.2 229 35.4
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.6e-39 167.2 234 34.6
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.6e-39 167.2 234 34.6
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.6e-39 167.2 196 39.3
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 2.7e-39 166.4 217 36.4
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.7e-39 166.4 230 34.8
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 7.8e-39 164.9 230 35.7
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.7e-38 163.7 230 35.7
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 2.3e-38 163.3 230 34.8
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 3.0e-38 162.9 213 37.6
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 3.9e-38 162.5 230 36.1
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 5.1e-38 162.2 213 37.6
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 6.6e-38 161.8 217 36.4
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 8.7e-38 161.4 242 33.9
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 1.9e-37 160.2 216 36.1
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.9e-37 160.2 209 33.5
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 2.5e-37 159.8 218 34.9
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 3.3e-37 159.5 218 38.1
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 3.3e-37 159.5 215 36.3
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 3.3e-37 159.5 228 36.4
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 4.3e-37 159.1 198 41.9
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 5.6e-37 158.7 199 40.2
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 9.6e-37 157.9 214 36.4
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.3e-36 157.5 218 34.4
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.6e-36 157.1 232 31.9
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 2.8e-36 156.4 212 36.3
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 6.2e-36 155.2 216 34.7
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 8.1e-36 154.8 219 37.9
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 8.1e-36 154.8 215 35.8
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 8.1e-36 154.8 218 34.4
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.1e-35 154.5 234 34.6
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-35 154.5 209 36.4
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.4e-35 154.1 230 34.8
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 1.8e-35 153.7 218 36.2
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 4.0e-35 152.5 213 34.3
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 5.3e-35 152.1 219 36.1
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 6.9e-35 151.8 227 35.7
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 9.0e-35 151.4 217 34.1
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.5e-34 150.6 243 32.5
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 2.0e-34 150.2 228 31.6
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.0e-34 150.2 216 35.2
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 7.6e-34 148.3 231 34.2
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 7.6e-34 148.3 218 34.9
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 7.6e-34 148.3 169 45.0
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 9.9e-34 147.9 223 35.4
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.3e-33 147.5 216 32.4
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.3e-33 147.5 229 34.1
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.7e-33 147.1 229 34.1
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 2.9e-33 146.4 229 33.2
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 4.9e-33 145.6 231 33.8
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 8.4e-33 144.8 231 30.3
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 8.4e-33 144.8 215 33.5
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.4e-32 144.1 231 35.5
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.9e-32 143.7 218 34.4
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 4.2e-32 142.5 231 32.5
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 9.3e-32 141.4 218 33.9
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 9.3e-32 141.4 210 33.3
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.2e-31 141.0 217 35.0
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.1e-31 140.2 217 32.3
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.7e-31 139.8 206 35.4
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.8e-30 137.1 185 35.7
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.8e-30 137.1 154 40.9
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 3.0e-30 136.3 195 32.8
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 3.0e-30 136.3 222 32.0
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.9e-30 136.0 232 30.2
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 5.1e-30 135.6 225 34.2
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.9e-29 133.7 216 31.0
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 7.4e-29 131.7 235 28.9
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.1e-27 127.9 154 37.7
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 2.4e-27 126.7 188 34.0
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.4e-27 126.7 152 36.8
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 4.0e-27 125.9 215 29.8
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.5e-26 124.0 221 28.5
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 4.5e-26 122.5 214 29.4
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 7.6e-26 121.7 220 30.9
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 9.9e-26 121.3 214 33.2
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 2.9e-25 119.8 200 32.0
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.4e-25 118.2 183 34.4
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 8.4e-25 118.2 215 26.0
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 2.4e-24 116.7 220 30.0
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 9.3e-24 114.8 202 30.2
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.2e-23 114.4 220 30.0
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 1.6e-23 114.0 220 30.0
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 1.6e-23 114.0 220 30.0
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 2.1e-23 113.6 174 33.3
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 2.7e-23 113.2 220 29.1
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 4.6e-23 112.5 220 28.6
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 4.6e-23 112.5 220 28.6
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 7.9e-23 111.7 151 35.1
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.0e-22 111.3 192 33.9
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.3e-22 110.2 192 32.8
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 2.3e-22 110.2 208 29.8
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 3.0e-22 109.8 147 34.7
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 3.9e-22 109.4 150 37.3
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 6.7e-22 108.6 220 27.7
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 6.7e-22 108.6 220 29.5
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 6.7e-22 108.6 147 33.3
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 8.7e-22 108.2 195 33.3
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 2.5e-21 106.7 215 27.9
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 2.5e-21 106.7 220 26.8
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 4.3e-21 105.9 181 33.1
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 9.6e-21 104.8 167 33.5
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.3e-20 104.4 206 26.7
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 4.8e-20 102.4 165 30.3
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.2e-20 102.1 145 36.6
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 1.4e-19 100.9 220 28.6
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 1.8e-19 100.5 218 30.3
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 4.0e-19 99.4 218 26.6
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 5.3e-19 99.0 81 58.0
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 6.9e-19 98.6 216 27.3
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.8e-18 95.5 145 35.2
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.3e-17 94.4 222 25.2
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.3e-17 94.4 222 25.2
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 8.4e-17 91.7 76 52.6
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 5.5e-16 89.0 114 35.1
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.3e-16 88.2 127 37.0
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 4.6e-15 85.9 119 37.8
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 7.9e-15 85.1 111 40.5
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 1.8e-14 84.0 113 38.1
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 3.3e-13 79.7 137 30.7
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.4e-11 73.6 107 31.8
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 3.1e-11 73.2 106 34.0
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 2.0e-10 70.5 78 37.2
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.0e-10 70.5 88 35.2
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 7.7e-10 68.6 69 42.0
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.9e-09 66.6 88 35.2
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 1.0e-06 58.2 87 34.5
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.8e-06 57.4 86 32.6
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.0e-06 56.6 122 30.3
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 6.7e-06 55.5 86 32.6
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 6.7e-06 55.5 86 32.6


User provided reference genes

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