Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.9e-107 392.1 203 100.0
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.7e-25 120.9 186 45.7
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.9e-25 119.4 167 47.9
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.9e-21 107.5 187 40.1
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.6e-20 103.2 168 40.5
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 1.4e-19 101.3 156 41.0
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 3.1e-19 100.1 139 43.2
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 3.1e-19 100.1 150 41.3
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 4.0e-19 99.8 143 44.8
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 6.8e-19 99.0 140 40.7
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.8e-19 99.0 143 43.4
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 6.8e-19 99.0 152 41.4
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 6.8e-19 99.0 143 42.7
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 8.9e-19 98.6 140 42.1
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 1.2e-18 98.2 141 40.4
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-18 98.2 166 46.4
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 2.0e-18 97.4 139 42.4
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 2.6e-18 97.1 140 42.1
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 2.6e-18 97.1 128 43.8
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 3.4e-18 96.7 138 42.0
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 3.4e-18 96.7 140 40.7
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 3.4e-18 96.7 163 44.8
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 4.4e-18 96.3 143 40.6
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 4.4e-18 96.3 143 40.6
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 5.8e-18 95.9 139 41.7
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 5.8e-18 95.9 137 43.1
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 5.8e-18 95.9 149 38.9
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 7.6e-18 95.5 137 42.3
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 7.6e-18 95.5 143 41.3
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 7.6e-18 95.5 137 42.3
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.7e-17 94.4 138 44.9
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 2.2e-17 94.0 135 40.0
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 2.9e-17 93.6 137 42.3
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 2.9e-17 93.6 149 38.9
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.9e-17 93.6 141 41.1
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.9e-17 93.6 139 41.0
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 2.9e-17 93.6 143 39.9
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 3.8e-17 93.2 139 43.9
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 3.8e-17 93.2 127 40.9
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 4.9e-17 92.8 140 41.4
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 4.9e-17 92.8 137 40.1
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 4.9e-17 92.8 139 40.3
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 4.9e-17 92.8 149 38.3
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 6.4e-17 92.4 138 40.6
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 6.4e-17 92.4 135 40.7
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 6.4e-17 92.4 144 41.0
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 6.4e-17 92.4 139 41.0
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 8.4e-17 92.0 144 38.2
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 8.4e-17 92.0 138 40.6
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.1e-16 91.7 167 34.7
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.1e-16 91.7 134 41.8
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 1.1e-16 91.7 144 37.5
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 1.1e-16 91.7 136 41.2
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-16 91.7 136 41.2
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 1.1e-16 91.7 139 39.6
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 1.4e-16 91.3 140 41.4
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.4e-16 91.3 158 44.3
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 1.4e-16 91.3 135 40.7
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 1.9e-16 90.9 139 40.3
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 1.9e-16 90.9 141 40.4
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 1.9e-16 90.9 149 38.9
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 2.4e-16 90.5 136 41.2
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 3.2e-16 90.1 127 41.7
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 4.1e-16 89.7 145 40.0
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 4.1e-16 89.7 137 39.4
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 7.1e-16 89.0 148 39.2
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.1e-16 89.0 136 40.4
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 7.1e-16 89.0 139 41.0
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 9.2e-16 88.6 136 40.4
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 9.2e-16 88.6 144 37.5
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 9.2e-16 88.6 140 40.7
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 9.2e-16 88.6 160 37.5
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 9.2e-16 88.6 123 41.5
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.2e-15 88.2 136 40.4
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 1.6e-15 87.8 144 38.9
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 1.6e-15 87.8 143 39.2
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 2.1e-15 87.4 143 35.0
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.1e-15 87.4 180 35.0
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.1e-15 87.4 135 40.7
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 2.7e-15 87.0 147 40.8
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.7e-15 87.0 127 38.6
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 3.5e-15 86.7 139 43.9
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 3.5e-15 86.7 156 39.1
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 3.5e-15 86.7 143 41.3
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 4.6e-15 86.3 120 41.7
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 4.6e-15 86.3 144 40.3
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 4.6e-15 86.3 132 41.7
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 4.6e-15 86.3 166 34.9
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 7.8e-15 85.5 143 37.1
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 1.0e-14 85.1 156 38.5
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 1.0e-14 85.1 140 40.0
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.0e-14 85.1 135 38.5
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.7e-14 84.3 169 34.9
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 1.7e-14 84.3 161 42.9
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 2.3e-14 84.0 140 39.3
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 2.3e-14 84.0 137 40.1
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 3.0e-14 83.6 140 39.3
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 3.9e-14 83.2 150 37.3
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 3.9e-14 83.2 150 37.3
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 5.1e-14 82.8 132 40.9
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 5.1e-14 82.8 141 39.7
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 5.1e-14 82.8 164 42.7
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 6.6e-14 82.4 139 37.4
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 6.6e-14 82.4 140 40.0
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 8.6e-14 82.0 146 39.7
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.5e-13 81.3 141 39.7
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-13 81.3 100 47.0
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 1.9e-13 80.9 147 38.1
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 1.9e-13 80.9 136 39.0
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 3.3e-13 80.1 135 38.5
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 3.3e-13 80.1 136 38.2
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 3.3e-13 80.1 97 46.4
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 4.3e-13 79.7 143 37.8
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 4.3e-13 79.7 101 50.5
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 5.6e-13 79.3 147 38.1
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 5.6e-13 79.3 94 46.8
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 7.3e-13 79.0 139 39.6
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 9.6e-13 78.6 151 40.4
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 9.6e-13 78.6 118 51.7
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 9.6e-13 78.6 97 44.3
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 1.2e-12 78.2 141 38.3
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 1.6e-12 77.8 100 47.0
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 1.6e-12 77.8 92 46.7
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 2.1e-12 77.4 129 39.5
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.6e-12 76.6 118 40.7
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 3.6e-12 76.6 93 46.2
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.7e-12 76.3 169 34.9
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 8.1e-12 75.5 93 45.2
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-11 75.1 161 34.8
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 1.1e-11 75.1 146 36.3
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 1.4e-11 74.7 100 41.0
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.4e-11 74.7 125 40.0
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 1.4e-11 74.7 91 47.3
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 2.4e-11 73.9 90 46.7
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 2.4e-11 73.9 119 52.1
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 3.1e-11 73.6 93 43.0
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 6.9e-11 72.4 108 41.7
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.2e-10 71.6 115 36.5
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 1.2e-10 71.6 92 43.5
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.5e-10 71.2 83 49.4
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-10 71.2 94 47.9
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 4.4e-10 69.7 92 42.4
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 5.8e-10 69.3 144 34.7
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 5.8e-10 69.3 138 35.5
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 9.9e-10 68.6 95 44.2
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 2.2e-09 67.4 112 39.3
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.9e-09 67.0 68 47.1
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 8.4e-09 65.5 144 35.4
SMO356G0208 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 8.4e-09 65.5 119 31.1
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 5.4e-08 62.8 153 33.3
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.0e-06 58.5 138 34.8
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 1.3e-06 58.2 97 37.1
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 1.7e-06 57.8 43 62.8
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 5.1e-06 56.2 86 41.9


User provided reference genes

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