Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 0.0e+00 1085.5 532 100.0
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 4.9e-307 1057.0 532 95.9
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 7.6e-276 953.4 522 86.6
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.8e-269 932.2 522 85.1
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.6e-233 811.6 535 72.9
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 3.0e-232 808.5 502 75.7
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 8.5e-227 790.4 526 71.7
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 8.5e-227 790.4 526 71.7
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 8.5e-227 790.4 525 72.0
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 1.4e-226 789.6 535 70.7
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.4e-226 789.6 521 71.4
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.2e-226 788.5 522 72.0
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 7.2e-226 787.3 534 70.8
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 1.2e-225 786.6 503 73.6
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 2.1e-225 785.8 520 71.3
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 3.6e-225 785.0 504 73.2
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 4.7e-225 784.6 521 70.8
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 6.1e-225 784.3 519 71.7
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 6.1e-225 784.3 505 72.5
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 7.9e-225 783.9 523 70.7
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 7.9e-225 783.9 528 70.6
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 7.9e-225 783.9 519 71.1
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.0e-224 783.5 505 72.5
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 1.0e-224 783.5 507 72.2
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 1.8e-224 782.7 500 73.0
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.8e-224 782.7 508 72.2
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 2.3e-224 782.3 498 73.1
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 2.3e-224 782.3 499 72.5
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.0e-224 781.9 523 70.4
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 5.1e-224 781.2 534 70.2
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 6.7e-224 780.8 505 72.1
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 6.7e-224 780.8 524 70.4
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 6.7e-224 780.8 500 72.8
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 8.8e-224 780.4 514 71.2
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 8.8e-224 780.4 522 70.5
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 1.1e-223 780.0 506 72.7
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.5e-223 779.6 522 70.5
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 2.0e-223 779.2 488 74.4
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 2.0e-223 779.2 520 70.4
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 3.3e-223 778.5 514 70.8
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 4.4e-223 778.1 500 72.6
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 7.4e-223 777.3 519 71.1
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 7.4e-223 777.3 506 71.7
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 9.7e-223 776.9 495 72.7
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 9.7e-223 776.9 521 69.9
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.3e-222 776.5 519 71.1
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.7e-222 776.2 519 70.7
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 2.2e-222 775.8 514 70.6
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 3.7e-222 775.0 520 70.8
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 3.7e-222 775.0 532 70.7
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 4.8e-222 774.6 521 69.7
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.1e-221 773.5 506 71.9
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.1e-221 773.5 508 71.1
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.1e-221 773.5 500 72.4
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.4e-221 773.1 519 69.4
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 1.4e-221 773.1 523 70.0
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 2.4e-221 772.3 534 69.7
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 2.4e-221 772.3 500 72.4
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 3.1e-221 771.9 495 71.7
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 3.1e-221 771.9 495 71.7
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 4.1e-221 771.5 495 71.9
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 4.1e-221 771.5 506 70.9
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 4.1e-221 771.5 500 72.0
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 5.3e-221 771.2 507 72.0
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 5.3e-221 771.2 509 70.9
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 7.0e-221 770.8 517 69.6
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 1.5e-220 769.6 500 71.4
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.5e-220 769.6 519 69.4
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.5e-220 769.6 519 69.4
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 2.0e-220 769.2 519 69.2
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 2.0e-220 769.2 519 69.2
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 2.0e-220 769.2 500 72.2
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.6e-220 768.8 528 68.9
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 2.6e-220 768.8 519 70.1
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 3.5e-220 768.5 519 69.7
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.5e-220 768.5 524 69.7
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 3.5e-220 768.5 500 72.0
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.5e-220 768.5 523 70.2
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 5.9e-220 767.7 533 68.1
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 7.7e-220 767.3 562 66.0
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 7.7e-220 767.3 530 70.0
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 7.7e-220 767.3 514 69.6
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 7.7e-220 767.3 514 69.6
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 1.0e-219 766.9 519 69.0
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.3e-219 766.5 527 69.8
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.2e-219 765.8 514 70.2
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.2e-219 765.8 530 69.8
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 2.2e-219 765.8 514 69.5
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.9e-219 765.4 500 72.2
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 8.5e-219 763.8 524 69.5
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.1e-218 763.5 519 69.4
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.9e-218 762.7 505 70.3
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 2.5e-218 762.3 526 68.8
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 3.2e-218 761.9 501 71.5
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 4.2e-218 761.5 502 69.9
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 4.2e-218 761.5 502 70.5
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 5.5e-218 761.1 528 68.8
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 5.5e-218 761.1 525 69.5
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 9.4e-218 760.4 493 72.2
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 9.4e-218 760.4 516 70.0
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 9.4e-218 760.4 510 70.2
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.2e-217 760.0 523 69.6
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 1.2e-217 760.0 539 67.2
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 6.1e-217 757.7 527 68.5
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.0e-216 756.9 491 72.1
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.5e-215 753.1 503 69.8
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.5e-215 753.1 503 69.8
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 1.5e-215 753.1 532 67.5
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.5e-215 753.1 520 67.9
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 2.6e-215 752.3 502 74.5
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 7.4e-215 750.7 493 71.8
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 9.7e-215 750.4 511 69.3
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 7.2e-210 734.2 527 67.0
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 6.8e-208 727.6 496 68.8
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 4.4e-207 724.9 463 73.2
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 8.3e-206 720.7 545 65.1
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.8e-205 719.5 497 68.6
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 3.5e-204 715.3 461 72.2
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 7.7e-204 714.1 566 62.9
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.3e-203 713.4 503 66.2
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.2e-201 706.8 496 67.1
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.8e-185 652.5 473 66.6
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.0e-179 634.0 422 69.7
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.1e-177 626.3 520 60.4
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.4e-173 613.6 519 58.0
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.6e-172 610.1 397 72.3
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 4.4e-167 592.0 488 57.4
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.6e-164 582.0 524 58.2
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 1.2e-159 567.4 379 70.7
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 3.0e-147 526.2 346 72.5
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.4e-144 517.3 419 61.6
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.7e-142 510.4 344 69.5
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.6e-140 503.8 504 51.2
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 2.1e-137 493.4 499 49.9
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.3e-129 467.6 497 48.5
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.4e-128 464.2 355 64.5
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 1.7e-126 457.2 274 75.9
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 2.3e-123 446.8 282 72.0
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.2e-121 440.3 353 62.3
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 5.3e-112 409.1 275 70.9
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.3e-102 377.9 287 66.9
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 7.2e-85 318.9 409 41.3
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 6.6e-78 295.8 185 71.4
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.6e-52 211.5 354 39.5
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 2.8e-52 210.7 325 41.2
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.4e-35 154.5 96 74.0
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 2.7e-31 141.0 93 71.0
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 7.4e-21 106.3 79 57.0
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 3.7e-20 104.0 69 69.6
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 4.2e-16 90.5 92 47.8
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 4.8e-12 77.0 74 52.7
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 1.1e-11 75.9 73 52.1
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 1.0e-09 69.3 48 60.4
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 1.3e-06 58.9 124 37.1
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.3e-06 58.9 36 66.7


User provided reference genes

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