Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 2.3e-31 139.0 121 100.0
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 2.4e-28 129.0 72 88.9
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 7.8e-19 97.4 72 66.7
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 4.0e-15 85.1 72 61.1
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 6.8e-15 84.3 72 59.7
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 1.2e-14 83.6 72 61.1
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 5.8e-14 81.3 72 59.7
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 5.8e-14 81.3 72 61.1
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 5.8e-14 81.3 121 71.1
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 7.5e-14 80.9 72 58.3
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 7.5e-14 80.9 72 58.3
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 7.5e-14 80.9 72 59.7
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 9.8e-14 80.5 72 58.3
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 1.3e-13 80.1 72 56.9
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 1.3e-13 80.1 72 59.7
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 1.3e-13 80.1 72 59.7
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 2.2e-13 79.3 72 58.3
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 2.9e-13 79.0 72 55.6
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 2.9e-13 79.0 72 55.6
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 2.9e-13 79.0 121 71.1
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 3.7e-13 78.6 72 55.6
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 3.7e-13 78.6 72 55.6
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 3.7e-13 78.6 72 55.6
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 3.7e-13 78.6 121 69.4
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 4.9e-13 78.2 72 56.9
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 4.9e-13 78.2 72 56.9
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 6.4e-13 77.8 70 58.6
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 6.4e-13 77.8 72 55.6
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 6.4e-13 77.8 72 54.2
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 6.4e-13 77.8 72 56.9
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 8.3e-13 77.4 72 54.2
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 8.3e-13 77.4 70 58.6
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 1.1e-12 77.0 71 60.6
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 1.1e-12 77.0 72 56.9
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 1.4e-12 76.6 72 58.3
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 1.4e-12 76.6 72 55.6
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 1.4e-12 76.6 121 73.6
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 1.4e-12 76.6 72 58.3
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 1.9e-12 76.3 72 55.6
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 1.9e-12 76.3 72 54.2
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 1.9e-12 76.3 72 54.2
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 2.4e-12 75.9 72 56.9
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 2.4e-12 75.9 69 58.0
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 2.4e-12 75.9 69 58.0
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 2.4e-12 75.9 72 54.2
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 2.4e-12 75.9 72 54.2
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 2.4e-12 75.9 72 52.8
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 3.2e-12 75.5 72 55.6
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 3.2e-12 75.5 72 52.8
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 3.2e-12 75.5 72 52.8
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 3.2e-12 75.5 72 54.2
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 3.2e-12 75.5 72 58.3
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 4.1e-12 75.1 72 54.2
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 4.1e-12 75.1 72 56.9
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 4.1e-12 75.1 72 56.9
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 5.4e-12 74.7 69 59.4
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 5.4e-12 74.7 71 54.9
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 5.4e-12 74.7 72 55.6
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 5.4e-12 74.7 72 55.6
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 7.1e-12 74.3 72 55.6
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 7.1e-12 74.3 71 53.5
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 7.1e-12 74.3 71 52.1
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 7.1e-12 74.3 72 51.4
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 7.1e-12 74.3 71 54.9
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 7.1e-12 74.3 72 52.8
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 9.2e-12 73.9 69 58.0
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 9.2e-12 73.9 69 58.0
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 9.2e-12 73.9 72 55.6
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 9.2e-12 73.9 72 55.6
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 9.2e-12 73.9 72 52.8
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 9.2e-12 73.9 72 56.9
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 1.2e-11 73.6 72 54.2
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 1.2e-11 73.6 72 54.2
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 1.2e-11 73.6 70 55.7
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 1.2e-11 73.6 72 52.8
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 1.2e-11 73.6 72 55.6
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 1.6e-11 73.2 72 54.2
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 1.6e-11 73.2 69 58.0
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 1.6e-11 73.2 69 58.0
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 2.1e-11 72.8 70 55.7
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 2.1e-11 72.8 70 55.7
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 2.1e-11 72.8 69 58.0
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 2.7e-11 72.4 70 55.7
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 2.7e-11 72.4 70 54.3
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 2.7e-11 72.4 70 55.7
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 2.7e-11 72.4 70 55.7
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 2.7e-11 72.4 72 55.6
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 2.7e-11 72.4 72 54.2
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 2.7e-11 72.4 70 54.3
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 2.7e-11 72.4 70 54.3
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 2.7e-11 72.4 72 54.2
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 4.6e-11 71.6 71 54.9
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 6.0e-11 71.2 71 53.5
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 6.0e-11 71.2 69 56.5
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 6.0e-11 71.2 69 56.5
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 6.0e-11 71.2 69 56.5
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 6.0e-11 71.2 69 56.5
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 6.0e-11 71.2 70 55.7
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 6.0e-11 71.2 72 56.9
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 6.0e-11 71.2 71 59.2
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 7.8e-11 70.9 72 51.4
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 7.8e-11 70.9 70 54.3
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 7.8e-11 70.9 70 54.3
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 1.0e-10 70.5 70 54.3
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 1.0e-10 70.5 72 55.6
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 1.0e-10 70.5 70 54.3
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 1.3e-10 70.1 70 52.9
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 1.3e-10 70.1 70 52.9
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 1.3e-10 70.1 69 55.1
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 1.7e-10 69.7 69 55.1
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 1.7e-10 69.7 71 53.5
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 1.7e-10 69.7 71 53.5
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 1.7e-10 69.7 71 53.5
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 1.7e-10 69.7 72 54.2
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 2.3e-10 69.3 66 54.5
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 2.3e-10 69.3 72 50.0
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 2.3e-10 69.3 72 48.6
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 2.3e-10 69.3 72 48.6
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 2.3e-10 69.3 72 50.0
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 2.3e-10 69.3 72 50.0
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 2.3e-10 69.3 72 52.8
Pp3c19_7230 Physcomitrium patens HOM05D004854 ORTHO05D005854 2.3e-10 69.3 42 85.7
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 2.3e-10 69.3 70 52.9
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 3.0e-10 68.9 72 52.8
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 3.9e-10 68.6 121 64.5
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 5.1e-10 68.2 69 55.1
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 5.1e-10 68.2 72 55.6
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 6.6e-10 67.8 72 54.2
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 6.6e-10 67.8 70 50.0
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 6.6e-10 67.8 72 47.2
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 8.6e-10 67.4 70 55.7
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 8.6e-10 67.4 68 55.9
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 8.6e-10 67.4 71 49.3
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 8.6e-10 67.4 72 50.0
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 8.6e-10 67.4 68 55.9
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 1.1e-09 67.0 69 52.2
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 1.5e-09 66.6 62 56.5
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 1.9e-09 66.2 71 50.7
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 2.5e-09 65.9 70 50.0
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 5.6e-09 64.7 72 47.2
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 7.3e-09 64.3 62 58.1
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 7.3e-09 64.3 72 48.6
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 2.8e-08 62.4 69 49.3
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 3.6e-08 62.0 72 47.2
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 4.7e-08 61.6 64 50.0
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 8.1e-08 60.8 71 46.5
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 1.4e-07 60.1 69 49.3
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 3.1e-07 58.9 68 50.0
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 4.0e-07 58.5 72 44.4
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 1.2e-06 57.0 68 48.5


User provided reference genes

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