Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_10530 Physcomitrium patens HOM05D003008 ORTHO05D003346 2.1e-120 435.6 208 100.0
Pp3c21_10540 Physcomitrium patens HOM05D003008 ORTHO05D003346 2.1e-120 435.6 208 100.0
Pp3c12_26070 Physcomitrium patens HOM05D003008 ORTHO05D003346 4.9e-37 158.7 128 64.8
Mapoly0003s0305 Marchantia polymorpha HOM05D003008 ORTHO05D003346 6.8e-31 138.3 128 55.5
CANSAT35G1991 Cannabis sativa HOM05D003008 ORTHO05D003346 2.6e-30 136.3 128 53.9
Aqoxy1G01512 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 3.4e-30 136.0 128 55.5
Pp3c13_24590 Physcomitrium patens HOM05D022829 ORTHO05D000166 3.4e-30 136.0 128 60.2
arahy.Tifrunner.gnm1.ann1.447SJP Arachis hypogaea HOM05D003008 ORTHO05D003346 5.8e-30 135.2 108 62.0
arahy.Tifrunner.gnm1.ann1.WH7KDQ Arachis hypogaea HOM05D003008 ORTHO05D003346 5.8e-30 135.2 108 62.0
Lalb_Chr18g0058241 Lupinus albus HOM05D003008 ORTHO05D003346 5.8e-30 135.2 128 55.5
MD10G1243800 Malus domestica HOM05D003008 ORTHO05D003346 5.8e-30 135.2 108 61.1
Prupe.4G099700 Prunus persica HOM05D003008 ORTHO05D003346 9.9e-30 134.4 108 61.1
Sed0021502 Sechium edule HOM05D003008 ORTHO05D003346 9.9e-30 134.4 128 53.9
Nitab4.5_0000076g0040 Nicotiana tabacum HOM05D003008 ORTHO05D003346 1.3e-29 134.0 115 59.1
Lsat_1_v5_gn_1_91720 Lactuca sativa HOM05D003008 ORTHO05D003346 2.2e-29 133.3 128 53.9
PGR044G1782 Punica granatum HOM05D003008 ORTHO05D003346 2.9e-29 132.9 108 60.2
TWI15G0228 Tripterygium wilfordii HOM05D003008 ORTHO05D003346 2.9e-29 132.9 128 53.9
CSS0037242 Camellia sinensis var. sinensis HOM05D003008 ORTHO05D003346 3.8e-29 132.5 128 53.9
ECA248G0148 Erigeron canadensis HOM05D003008 ORTHO05D003346 3.8e-29 132.5 128 53.9
Glyma.15G134500 Glycine max HOM05D003008 ORTHO05D003346 3.8e-29 132.5 128 53.1
Manes.14G125700 Manihot esculenta HOM05D003008 ORTHO05D003346 3.8e-29 132.5 128 53.9
SEGI_26502 Sequoiadendron giganteum HOM05D003008 ORTHO05D003346 3.8e-29 132.5 128 55.5
ATR0763G210 Amborella trichopoda HOM05D003008 ORTHO05D003346 4.9e-29 132.1 129 53.5
Eucgr.D01628 Eucalyptus grandis HOM05D003008 ORTHO05D003346 4.9e-29 132.1 128 52.3
HanXRQChr11g0340941 Helianthus annuus HOM05D003008 ORTHO05D003346 4.9e-29 132.1 128 53.9
Nn7g37799 Nelumbo nucifera HOM05D003008 ORTHO05D003346 4.9e-29 132.1 128 53.9
RcHm_v2.0_Chr5g0018171 Rosa chinensis HOM05D003008 ORTHO05D003346 4.9e-29 132.1 128 53.1
VMungo0540G1323 Vigna mungo HOM05D003008 ORTHO05D003346 4.9e-29 132.1 128 53.1
Glyma.09G028600 Glycine max HOM05D003008 ORTHO05D003346 6.4e-29 131.7 128 53.1
Phvul.006G124400 Phaseolus vulgaris HOM05D003008 ORTHO05D003346 6.4e-29 131.7 128 53.1
Solyc02g022830.3 Solanum lycopersicum HOM05D003008 ORTHO05D003346 6.4e-29 131.7 128 53.1
Sopen02g006420 Solanum pennellii HOM05D003008 ORTHO05D003346 6.4e-29 131.7 128 53.1
Ca_25498_v3 Cicer arietinum L. HOM05D003008 ORTHO05D003346 8.4e-29 131.3 128 53.1
Lalb_Chr15g0088941 Lupinus albus HOM05D003008 ORTHO05D003346 1.1e-28 131.0 108 60.2
FvH4_3g11220 Fragaria vesca HOM05D003008 ORTHO05D003346 1.4e-28 130.6 128 52.3
Dinv08829 Davidia involucrata HOM05D003008 ORTHO05D003346 2.4e-28 129.8 128 52.3
FAN25G1988 Fragaria x ananassa HOM05D003008 ORTHO05D003346 2.4e-28 129.8 128 51.6
QL03p057306 Quercus lobata HOM05D003008 ORTHO05D003346 2.4e-28 129.8 128 53.1
DCAR_000835 Daucus carota HOM05D003008 ORTHO05D003346 3.2e-28 129.4 128 52.3
FAN21G3776 Fragaria x ananassa HOM05D003008 ORTHO05D003346 3.2e-28 129.4 128 51.6
MCO14G370 Micromonas commoda HOM05D003008 ORTHO05D003346 3.2e-28 129.4 128 51.6
AagrBONN_evm.TU.Sc2ySwM_117.1205 Anthoceros agrestis HOM05D003008 ORTHO05D003346 5.4e-28 128.6 128 54.7
Lj6g0020929 Lotus japonicus HOM05D003008 ORTHO05D003346 5.4e-28 128.6 128 52.3
HPP92_013208 Vanilla planifolia HOM05D003008 ORTHO05D003346 9.2e-28 127.9 128 52.3
Medtr2g031620 Medicago truncatula HOM05D003008 ORTHO05D003346 1.2e-27 127.5 128 52.3
Thecc.06G011200 Theobroma cacao HOM05D003008 ORTHO05D003346 1.2e-27 127.5 128 50.8
CiPaw.03G113700 Carya illinoinensis HOM05D003008 ORTHO05D003346 1.6e-27 127.1 128 50.8
SalBow8G1512 Salvia bowleyana HOM05D003008 ORTHO05D003346 1.6e-27 127.1 128 52.3
Sc10g0009650 Simmondsia chinensis HOM05D003008 ORTHO05D003346 1.6e-27 127.1 128 53.1
vmacro03472 Vaccinium macrocarpon HOM05D003008 ORTHO05D003346 1.6e-27 127.1 128 53.1
MELO3C002865.2 Cucumis melo HOM05D003008 ORTHO05D003346 2.1e-27 126.7 108 58.3
Potri.001G461300 Populus trichocarpa HOM05D003008 ORTHO05D003346 2.1e-27 126.7 128 50.0
Aa31LG6G11900 Aethionema arabicum HOM05D003008 ORTHO05D003346 2.7e-27 126.3 216 36.6
unitig_92.g28176 Utricularia gibba HOM05D003008 ORTHO05D003346 2.7e-27 126.3 128 50.0
Atru.chr10.699 Acer truncatum HOM05D003008 ORTHO05D003346 3.5e-27 125.9 108 59.3
GSVIVG01021728001 Vitis vinifera HOM05D003008 ORTHO05D003346 3.5e-27 125.9 128 50.8
CDE01G0377 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 4.6e-27 125.6 128 51.6
Gohir.A05G112501 Gossypium hirsutum HOM05D003008 ORTHO05D003346 4.6e-27 125.6 128 50.8
Gohir.D05G113000 Gossypium hirsutum HOM05D003008 ORTHO05D003346 4.6e-27 125.6 128 50.8
Gorai.009G117100 Gossypium raimondii HOM05D003008 ORTHO05D003346 4.6e-27 125.6 128 50.8
Oeu060320.2 Olea europaea HOM05D003008 ORTHO05D003346 4.6e-27 125.6 128 51.6
PSO541G5492 Papaver somniferum HOM05D003008 ORTHO05D003346 4.6e-27 125.6 128 52.3
PSO675G7488 Papaver somniferum HOM05D003008 ORTHO05D003346 4.6e-27 125.6 128 52.3
TPR.G15179 Trifolium pratense HOM05D003008 ORTHO05D003346 4.6e-27 125.6 128 52.3
Actinidia33712 Actinidia chinensis HOM05D003008 ORTHO05D003346 6.0e-27 125.2 128 51.6
Aqoxy7G01281 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 6.0e-27 125.2 108 59.3
Migut.M01920 Erythranthe guttata HOM05D003008 ORTHO05D003346 6.0e-27 125.2 128 51.6
Psat1g164800 Pisum sativum HOM05D003008 ORTHO05D003346 6.0e-27 125.2 128 52.3
Cc09_g07360 Coffea canephora HOM05D003008 ORTHO05D003346 7.8e-27 124.8 128 50.0
Lj2A336T37 Lonicera japonica HOM05D003008 ORTHO05D003346 1.3e-26 124.0 128 50.8
Ciclev10014667m.g Citrus clementina HOM05D003008 ORTHO05D003346 1.7e-26 123.6 128 51.6
CDE02G0274 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 3.9e-26 122.5 128 51.6
HanXRQChr01g0020641 Helianthus annuus HOM05D003008 ORTHO05D003346 3.9e-26 122.5 128 50.8
THA.LOC104798583 Tarenaya hassleriana HOM05D003008 ORTHO05D003346 3.9e-26 122.5 128 49.2
GSVIVG01008778001 Vitis vinifera HOM05D003008 ORTHO05D003346 3.9e-26 122.5 124 50.8
Atru.chr2.1568 Acer truncatum HOM05D003008 ORTHO05D003346 5.1e-26 122.1 108 56.5
BcaB07g32707 Brassica carinata HOM05D003008 ORTHO05D003346 5.1e-26 122.1 216 37.0
BcaC05g27092 Brassica carinata HOM05D003008 ORTHO05D003346 6.6e-26 121.7 216 37.0
A09p35720 Brassica napus HOM05D003008 ORTHO05D003346 6.6e-26 121.7 216 37.0
C05p29740 Brassica napus HOM05D003008 ORTHO05D003346 6.6e-26 121.7 216 37.0
BolC5t31702H Brassica oleracea HOM05D003008 ORTHO05D003346 6.6e-26 121.7 216 37.0
BraA09t39097Z Brassica rapa HOM05D003008 ORTHO05D003346 6.6e-26 121.7 216 37.0
Sabra16G0313000 Salix brachista HOM05D003008 ORTHO05D003346 6.6e-26 121.7 128 48.4
Ah.09g232330 Amaranthus hybridus HOM05D000070 ORTHO05D003346 8.7e-26 121.3 128 50.0
Os06g0671700 Oryza sativa ssp. japonica HOM05D003008 ORTHO05D003346 8.7e-26 121.3 124 52.4
HPP92_005928 Vanilla planifolia HOM05D003008 ORTHO05D003346 1.5e-25 120.6 108 54.6
Zm00001eb274090 Zea mays HOM05D003008 ORTHO05D003346 1.9e-25 120.2 119 52.9
AUR62025821 Chenopodium quinoa HOM05D003008 ORTHO05D003346 2.5e-25 119.8 128 50.0
Lj1C1159T8 Lonicera japonica HOM05D003008 ORTHO05D003346 2.5e-25 119.8 128 47.7
AT1G30680 Arabidopsis thaliana HOM05D003008 ORTHO05D003346 4.3e-25 119.0 108 57.4
Sp1g26580 Schrenkiella parvula HOM05D003008 ORTHO05D003346 4.3e-25 119.0 216 36.6
ClCG03G008470 Citrullus lanatus HOM05D003008 ORTHO05D003346 5.6e-25 118.6 97 60.8
SHI24823 Sapria himalayana HOM05D003008 ORTHO05D003346 7.3e-25 118.2 128 48.4
AL1G44740 Arabidopsis lyrata HOM05D003008 ORTHO05D003346 1.6e-24 117.1 216 35.6
SMO364G0389 Selaginella moellendorffii HOM05D003008 ORTHO05D003346 1.6e-24 117.1 128 48.4
CARHR030150 Cardamine hirsuta HOM05D003008 ORTHO05D003346 2.1e-24 116.7 128 46.9
CsaV3_1G037560 Cucumis sativus L. HOM05D003008 ORTHO05D003346 2.1e-24 116.7 128 48.4
EL10Ac8g19523 Beta vulgaris HOM05D003008 ORTHO05D003346 2.8e-24 116.3 128 48.4
Thhalv10006950m.g Eutrema salsugineum HOM05D003008 ORTHO05D003346 4.7e-24 115.5 128 48.4
Carub.0001s2896 Capsella rubella HOM05D003008 ORTHO05D003346 6.2e-24 115.2 108 53.7
DCAR_007820 Daucus carota HOM05D003008 ORTHO05D003346 1.4e-23 114.0 105 53.3
Duzib235G1093 Durio zibethinus HOM05D003008 ORTHO05D003346 1.4e-23 114.0 113 52.2
SGA_v2.0_scaffold223G42877 Striga asiatica HOM05D003008 ORTHO05D003346 1.8e-23 113.6 123 51.2
CBR_g38556 Chara braunii HOM05D003008 ORTHO05D003346 4.0e-23 112.5 132 47.0
CBR_g16946 Chara braunii HOM05D003008 ORTHO05D003346 5.3e-23 112.1 132 47.0
PRCOL_00000580 Prasinoderma coloniale HOM05D003008 ORTHO05D003346 1.5e-22 110.5 145 42.8
COL.COLO4_22894 Corchorus olitorius HOM05D003008 ORTHO05D003346 2.2e-21 106.7 113 49.6
Rhsim13G0124600 Rhododendron simsii HOM05D003008 ORTHO05D003346 8.4e-21 104.8 112 47.3
MBI02_g32311_MAGBIO Magnolia biondii HOM05D003008 ORTHO05D003346 1.1e-20 104.4 86 58.1
Cfa023567 Carpinus fangiana HOM05D003008 ORTHO05D003346 6.0e-19 98.6 123 43.1
AUR62029886 Chenopodium quinoa HOM05D003008 ORTHO05D003346 3.3e-17 92.8 78 59.0
Cre12.g514950 Chlamydomonas reinhardtii HOM05D003008 ORTHO05D003346 5.3e-15 85.5 125 39.2
Pp3c7_13880 Physcomitrium patens HOM05D022829 ORTHO05D003346 3.4e-14 82.8 69 62.3
FAN16G0127 Fragaria x ananassa HOM05D003008 ORTHO05D003346 1.3e-13 80.9 82 48.8
Haze_13591 Corylus avellana HOM05D003008 ORTHO05D003346 1.7e-13 80.5 154 33.1
ATR0681G109 Amborella trichopoda HOM05D003008 ORTHO05D003346 9.3e-12 74.7 73 49.3
Nitab4.5_0002005g0080 Nicotiana tabacum HOM05D003008 ORTHO05D003346 6.0e-11 72.0 43 69.8
SGA_v2.0_scaffold1G00291 Striga asiatica HOM05D003008 ORTHO05D003346 5.1e-10 68.9 90 43.3
Cre12.g503150 Chlamydomonas reinhardtii HOM05D003008 ORTHO05D003346 9.0e-07 58.2 69 44.9


User provided reference genes

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