Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_10400 Physcomitrium patens HOM05D006383 ORTHO05D007815 0.0e+00 1723.4 883 100.0
Pp3c19_5540 Physcomitrium patens HOM05D006383 ORTHO05D007815 0.0e+00 1100.5 893 67.2
Pp3c11_18250 Physcomitrium patens HOM05D006383 ORTHO05D007815 1.6e-238 830.1 909 53.9
AagrBONN_evm.TU.Sc2ySwM_228.1213 Anthoceros agrestis HOM05D006383 ORTHO05D007815 3.0e-192 676.4 984 44.5
Mapoly0064s0101 Marchantia polymorpha HOM05D006383 ORTHO05D007815 2.8e-182 643.3 976 41.9
SMO351G0573 Selaginella moellendorffii HOM05D006383 ORTHO05D007815 8.4e-147 525.4 888 37.2
Lj8A304T42 Lonicera japonica HOM05D006383 ORTHO05D007815 1.5e-132 478.0 885 36.3
TPR.G38040 Trifolium pratense HOM05D006383 ORTHO05D007815 2.1e-129 467.6 887 34.5
Glyma.01G231700 Glycine max HOM05D006383 ORTHO05D007815 2.7e-129 467.2 884 35.1
CBR_g19443 Chara braunii HOM05D006383 ORTHO05D007815 4.7e-129 466.5 1188 32.9
HanXRQChr10g0309251 Helianthus annuus HOM05D006383 ORTHO05D007815 4.7e-129 466.5 881 36.0
Glyma.11G014600 Glycine max HOM05D006383 ORTHO05D007815 6.1e-129 466.1 884 35.0
Medtr5g008710 Medicago truncatula HOM05D006383 ORTHO05D007815 2.3e-128 464.2 884 34.5
Nn1g08377 Nelumbo nucifera HOM05D006383 ORTHO05D007815 1.1e-127 461.8 883 34.9
Atru.chr4.4 Acer truncatum HOM05D006383 ORTHO05D007815 3.3e-127 460.3 881 34.6
LjContig00222g0014398 Lotus japonicus HOM05D006383 ORTHO05D007815 7.4e-127 459.1 887 34.7
TAR317G0001 Trochodendron aralioides HOM05D006383 ORTHO05D007815 1.3e-126 458.4 892 35.0
Haze_11088 Corylus avellana HOM05D006383 ORTHO05D007815 3.7e-126 456.8 885 35.0
Cfa008544 Carpinus fangiana HOM05D006383 ORTHO05D007815 4.8e-126 456.4 885 35.1
Lsat_1_v5_gn_5_82200 Lactuca sativa HOM05D006383 ORTHO05D007815 8.2e-126 455.7 884 34.4
ECA234G1746 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.1e-125 455.3 884 34.6
Phvul.002G035400 Phaseolus vulgaris HOM05D006383 ORTHO05D007815 1.1e-125 455.3 885 34.5
DCAR_020439 Daucus carota HOM05D006383 ORTHO05D007815 1.8e-125 454.5 881 34.5
Psat2g186800 Pisum sativum HOM05D006383 ORTHO05D007815 1.8e-125 454.5 887 33.8
Migut.L01608 Erythranthe guttata HOM05D006383 ORTHO05D007815 2.4e-125 454.1 884 34.6
TWI79G0526 Tripterygium wilfordii HOM05D006383 ORTHO05D007815 7.0e-125 452.6 879 34.6
GSVIVG01027490001 Vitis vinifera HOM05D006383 ORTHO05D007815 2.6e-124 450.7 884 34.4
Prupe.2G049900 Prunus persica HOM05D006383 ORTHO05D007815 4.5e-124 449.9 880 34.7
Potri.013G161700 Populus trichocarpa HOM05D006383 ORTHO05D007815 7.7e-124 449.1 879 34.4
PSO782G2360 Papaver somniferum HOM05D006383 ORTHO05D007815 1.7e-123 448.0 889 33.2
Actinidia07537 Actinidia chinensis HOM05D006383 ORTHO05D007815 5.5e-122 443.0 884 33.7
BcaB01g02763 Brassica carinata HOM05D006383 ORTHO05D007815 2.7e-121 440.7 882 33.6
Manes.15G189200 Manihot esculenta HOM05D006383 ORTHO05D007815 4.7e-121 439.9 880 34.0
VMungo1215G1626 Vigna mungo HOM05D006383 ORTHO05D007815 4.7e-121 439.9 884 33.6
AL6G44030 Arabidopsis lyrata HOM05D006383 ORTHO05D007815 6.1e-121 439.5 883 33.2
C03p34900 Brassica napus HOM05D006383 ORTHO05D007815 8.0e-121 439.1 882 33.8
CAN.G40.1 Capsicum annuum HOM05D006383 ORTHO05D007815 1.0e-120 438.7 884 34.3
Duzib248G1218 Durio zibethinus HOM05D006383 ORTHO05D007815 1.4e-120 438.3 885 33.3
Aqoxy1G01561 Aquilegia oxysepala HOM05D006383 ORTHO05D007815 1.8e-120 438.0 885 32.8
RcHm_v2.0_Chr1g0329651 Rosa chinensis HOM05D006383 ORTHO05D007815 1.8e-120 438.0 883 33.0
A03p28870 Brassica napus HOM05D006383 ORTHO05D007815 2.3e-120 437.6 882 33.3
BolC3t15801H Brassica oleracea HOM05D006383 ORTHO05D007815 3.0e-120 437.2 882 33.7
BcaC01g04690 Brassica carinata HOM05D006383 ORTHO05D007815 6.7e-120 436.0 882 33.6
Hma1.2p1_0122F.1_g057520 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 6.7e-120 436.0 882 34.2
MD02G1269900 Malus domestica HOM05D006383 ORTHO05D007815 6.7e-120 436.0 884 33.7
Sp6g07220 Schrenkiella parvula HOM05D006383 ORTHO05D007815 2.0e-119 434.5 882 33.6
AT4G10180 Arabidopsis thaliana HOM05D006383 ORTHO05D007815 3.3e-119 433.7 885 33.4
THA.LOC104813077 Tarenaya hassleriana HOM05D006383 ORTHO05D007815 5.7e-119 433.0 885 33.9
CDE09G0807 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 9.7e-119 432.2 884 32.7
FAN10G0291 Fragaria x ananassa HOM05D006383 ORTHO05D007815 1.7e-118 431.4 885 32.5
CiPaw.02G126400 Carya illinoinensis HOM05D006383 ORTHO05D007815 6.3e-118 429.5 881 33.6
QL10p065235 Quercus lobata HOM05D006383 ORTHO05D007815 1.1e-117 428.7 946 32.5
Hund03213 Selenicereus undatus HOM05D006383 ORTHO05D007815 1.1e-117 428.7 884 33.0
Thhalv10028566m.g Eutrema salsugineum HOM05D006383 ORTHO05D007815 1.4e-117 428.3 882 33.2
FAN03G2677 Fragaria x ananassa HOM05D006383 ORTHO05D007815 5.3e-117 426.4 885 32.2
BraA03t12085Z Brassica rapa HOM05D006383 ORTHO05D007815 9.1e-117 425.6 882 33.2
ClCG05G002590 Citrullus lanatus HOM05D006383 ORTHO05D007815 4.5e-116 423.3 883 33.2
MELO3C006225.2 Cucumis melo HOM05D006383 ORTHO05D007815 4.5e-116 423.3 885 32.8
Os01g0104600 Oryza sativa ssp. japonica HOM05D006383 ORTHO05D007815 5.9e-116 422.9 882 31.1
Solyc01g056340.4 Solanum lycopersicum HOM05D006383 ORTHO05D007815 1.0e-115 422.2 860 33.1
CARHR256640 Cardamine hirsuta HOM05D006383 ORTHO05D007815 2.2e-115 421.0 888 32.3
Sc26g0001410 Simmondsia chinensis HOM05D006383 ORTHO05D007815 2.9e-115 420.6 883 33.2
Carub.0006s2874 Capsella rubella HOM05D006383 ORTHO05D007815 4.7e-113 413.3 881 31.7
Eucgr.E01781 Eucalyptus grandis HOM05D006383 ORTHO05D007815 6.1e-113 412.9 882 32.2
ATR0620G042 Amborella trichopoda HOM05D006383 ORTHO05D007815 5.2e-112 409.8 843 33.5
Zm00001eb317230 Zea mays HOM05D006383 ORTHO05D007815 1.2e-111 408.7 882 30.7
Sed0006461 Sechium edule HOM05D006383 ORTHO05D007815 2.6e-111 407.5 885 31.5
CSS0026217 Camellia sinensis var. sinensis HOM05D006383 ORTHO05D007815 9.8e-111 405.6 883 33.0
SGA_v2.0_scaffold222G42760 Striga asiatica HOM05D006383 ORTHO05D007815 9.8e-111 405.6 895 31.6
Gohir.D04G150300 Gossypium hirsutum HOM05D006383 ORTHO05D007815 1.3e-110 405.2 886 32.5
PSO063G0245 Papaver somniferum HOM05D006383 ORTHO05D007815 3.7e-110 403.7 889 31.8
Gorai.012G136900 Gossypium raimondii HOM05D006383 ORTHO05D007815 6.3e-110 402.9 886 32.4
Peaxi162Scf00005g01511 Petunia axillaris HOM05D006383 ORTHO05D007815 3.1e-109 400.6 918 31.7
Lalb_Chr05g0211431 Lupinus albus HOM05D006383 ORTHO05D007815 1.6e-108 398.3 842 33.0
CANSAT01G2053 Cannabis sativa HOM05D006383 ORTHO05D007815 2.7e-108 397.5 884 32.2
Gohir.A04G110100 Gossypium hirsutum HOM05D006383 ORTHO05D007815 1.3e-107 395.2 886 32.1
Sabra13G0129300 Salix brachista HOM05D006383 ORTHO05D007815 3.2e-106 390.6 882 32.8
Zm00001eb341540 Zea mays HOM05D006383 ORTHO05D007815 3.2e-106 390.6 883 30.2
Oeu021235.1 Olea europaea HOM05D006383 ORTHO05D007815 4.0e-104 383.6 881 32.2
Aa31LG9G11770 Aethionema arabicum HOM05D006383 ORTHO05D007815 4.4e-103 380.2 887 31.0
Ciclev10015119m.g Citrus clementina HOM05D006383 ORTHO05D007815 2.8e-102 377.5 810 33.6
PGR042G0734 Punica granatum HOM05D006383 ORTHO05D007815 1.4e-101 375.2 882 30.8
unitig_8.g3541 Utricularia gibba HOM05D006383 ORTHO05D007815 3.3e-98 364.0 841 31.0
SalBow3G0737 Salvia bowleyana HOM05D006383 ORTHO05D007815 2.8e-97 360.9 928 30.0
SalBow5G2916 Salvia bowleyana HOM05D006383 ORTHO05D007815 2.8e-97 360.9 928 30.0
FAN01G1101 Fragaria x ananassa HOM05D006383 ORTHO05D007815 2.9e-94 350.9 946 28.3
FAN06G4711 Fragaria x ananassa HOM05D006383 ORTHO05D007815 7.0e-93 346.3 884 28.6
Thecc.02G151200 Theobroma cacao HOM05D006383 ORTHO05D007815 4.6e-92 343.6 791 31.7
Sopen01g020390 Solanum pennellii HOM05D006383 ORTHO05D007815 1.3e-91 342.0 809 30.8
EL10Ac3g06365 Beta vulgaris HOM05D006383 ORTHO05D007815 2.5e-90 337.8 950 29.4
FvH4_7g04420 Fragaria vesca HOM05D006383 ORTHO05D007815 7.3e-90 336.3 806 30.0
CsaV3_3G010030 Cucumis sativus L. HOM05D006383 ORTHO05D007815 8.9e-88 329.3 795 31.3
Nitab4.5_0007118g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 7.8e-84 316.2 905 29.7
CiPaw.01G204500 Carya illinoinensis HOM05D006383 ORTHO05D007815 4.3e-82 310.5 759 31.0
Hma1.2p1_0122F.1_g057530 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 1.4e-80 305.4 291 55.7
AUR62030094 Chenopodium quinoa HOM05D006383 ORTHO05D007815 1.1e-77 295.8 883 28.1
Nitab4.5_0000075g0020 Nicotiana tabacum HOM05D006383 ORTHO05D007815 1.6e-76 292.0 275 56.4
Nitab4.5_0021341g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 8.6e-75 286.2 242 56.2
Cc06_g23460 Coffea canephora HOM05D006383 ORTHO05D007815 1.2e-73 282.3 245 55.5
Rhsim01G0101600 Rhododendron simsii HOM05D006383 ORTHO05D007815 1.8e-72 278.5 272 52.6
Ah.07g203930 Amaranthus hybridus HOM05D000443 ORTHO05D001278 6.8e-72 276.6 243 54.3
Dinv26644 Davidia involucrata HOM05D006383 ORTHO05D007815 8.9e-72 276.2 240 54.2
Ca_24479_v3 Cicer arietinum L. HOM05D006383 ORTHO05D007815 1.2e-71 275.8 794 28.1
FAN06G0936 Fragaria x ananassa HOM05D006383 ORTHO05D007815 4.1e-69 267.3 243 52.3
PGSC0003DMG400031459 Solanum tuberosum HOM05D006383 ORTHO05D007815 1.3e-67 262.3 220 56.4
HPP92_022268 Vanilla planifolia HOM05D006383 ORTHO05D007815 2.1e-65 255.0 275 50.5
HPP92_027515 Vanilla planifolia HOM05D006383 ORTHO05D007815 2.8e-65 254.6 247 49.8
HPP92_022397 Vanilla planifolia HOM05D006383 ORTHO05D007815 8.1e-65 253.1 275 50.9
SHI24488 Sapria himalayana HOM05D006383 ORTHO05D007815 2.4e-64 251.5 855 25.5
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 4.4e-63 247.3 253 51.0
vmacro20727 Vaccinium macrocarpon HOM05D006383 ORTHO05D007815 5.6e-58 230.3 199 57.8
AUR62038212 Chenopodium quinoa HOM05D006383 ORTHO05D007815 6.2e-49 200.3 277 43.7
Cpa.g.sc21.223 Carica papaya HOM05D006383 ORTHO05D007815 1.4e-48 199.1 175 57.7
SEGI_12536 Sequoiadendron giganteum HOM05D006383 ORTHO05D007815 3.9e-43 181.0 130 70.0
Sopen01g020410 Solanum pennellii HOM05D006383 ORTHO05D007815 5.0e-22 110.9 80 63.8
Cre13.g571560 Chlamydomonas reinhardtii HOM05D006383 ORTHO05D007815 3.2e-21 108.2 258 28.3
PRCOL_00006914 Prasinoderma coloniale HOM05D006383 ORTHO05D007815 3.3e-18 98.2 315 26.0
MCO10G269 Micromonas commoda HOM05D006383 ORTHO05D007815 1.2e-15 89.7 333 25.5
Zm00001eb129170 Zea mays HOM05D006383 ORTHO05D007815 3.9e-11 74.7 111 40.5
CDE11G0182 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 2.0e-10 72.4 71 46.5
Glyma.13G043200 Glycine max HOM05D006383 ORTHO05D007815 2.8e-09 68.6 73 50.7
SEGI_16502 Sequoiadendron giganteum HOM05D006383 ORTHO05D007815 4.1e-08 64.7 49 61.2
arahy.Tifrunner.gnm1.ann1.W6TY16 Arachis hypogaea HOM05D000199 ORTHO05D007815 7.7e-07 60.5 51 58.8


User provided reference genes

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