Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 8.5e-64 246.9 129 100.0
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 1.4e-34 149.8 118 60.2
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 5.9e-33 144.4 117 58.1
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 1.3e-32 143.3 117 57.3
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 3.8e-32 141.7 119 55.5
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 6.5e-32 141.0 119 55.5
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 1.5e-31 139.8 119 53.8
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 1.5e-31 139.8 119 55.5
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 2.5e-31 139.0 120 54.2
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 3.2e-31 138.7 119 55.5
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 3.2e-31 138.7 120 54.2
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 5.5e-31 137.9 120 52.5
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 7.2e-31 137.5 119 52.9
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 7.2e-31 137.5 119 54.6
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 7.2e-31 137.5 119 54.6
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 9.5e-31 137.1 119 52.9
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 1.6e-30 136.3 120 53.3
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 2.1e-30 136.0 117 52.1
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 3.6e-30 135.2 120 53.3
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 4.7e-30 134.8 119 53.8
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 6.1e-30 134.4 119 53.8
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.0e-29 133.7 119 52.1
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.0e-29 133.7 119 52.1
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 1.0e-29 133.7 119 53.8
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 1.0e-29 133.7 117 53.0
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 1.8e-29 132.9 119 52.9
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 2.3e-29 132.5 124 53.2
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 2.3e-29 132.5 120 55.0
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 2.3e-29 132.5 117 56.4
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 3.0e-29 132.1 98 62.2
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 3.0e-29 132.1 98 62.2
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 4.0e-29 131.7 118 55.1
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 4.0e-29 131.7 120 51.7
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 6.8e-29 131.0 119 53.8
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 8.8e-29 130.6 119 51.3
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 1.2e-28 130.2 119 50.4
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.2e-28 130.2 119 54.6
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 1.2e-28 130.2 119 52.1
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 1.2e-28 130.2 117 53.0
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 1.2e-28 130.2 120 51.7
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 1.5e-28 129.8 117 51.3
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 1.5e-28 129.8 119 52.1
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 1.5e-28 129.8 135 49.6
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 1.5e-28 129.8 119 52.9
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 2.6e-28 129.0 119 49.6
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 2.6e-28 129.0 119 52.1
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 3.4e-28 128.6 118 55.1
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 3.4e-28 128.6 119 50.4
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 4.4e-28 128.3 119 49.6
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 5.7e-28 127.9 117 52.1
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 5.7e-28 127.9 119 51.3
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 7.5e-28 127.5 119 50.4
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 9.8e-28 127.1 119 51.3
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 1.3e-27 126.7 118 50.0
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 1.3e-27 126.7 118 50.0
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 1.3e-27 126.7 117 53.0
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 1.3e-27 126.7 119 48.7
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 1.3e-27 126.7 119 51.3
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 1.3e-27 126.7 117 51.3
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 1.7e-27 126.3 118 49.2
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 1.7e-27 126.3 118 49.2
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 1.7e-27 126.3 118 49.2
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 1.7e-27 126.3 117 50.4
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 1.7e-27 126.3 118 50.0
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 2.2e-27 125.9 119 49.6
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 2.2e-27 125.9 119 49.6
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 3.7e-27 125.2 120 48.3
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 3.7e-27 125.2 119 50.4
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 3.7e-27 125.2 118 55.1
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 4.9e-27 124.8 120 50.8
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 6.3e-27 124.4 117 49.6
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 6.3e-27 124.4 119 47.9
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 6.3e-27 124.4 119 48.7
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 6.3e-27 124.4 119 51.3
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 8.3e-27 124.0 117 53.0
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 1.4e-26 123.2 117 53.0
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 1.4e-26 123.2 117 54.7
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 1.8e-26 122.9 118 47.5
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 1.8e-26 122.9 117 51.3
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 3.1e-26 122.1 117 53.8
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 3.1e-26 122.1 117 53.8
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 4.1e-26 121.7 117 47.9
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 4.1e-26 121.7 117 49.6
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 4.1e-26 121.7 117 53.8
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 5.4e-26 121.3 117 53.8
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 7.0e-26 120.9 118 46.6
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 9.2e-26 120.6 117 51.3
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 1.2e-25 120.2 94 59.6
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 2.7e-25 119.0 117 47.0
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 7.8e-25 117.5 96 57.3
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 7.8e-25 117.5 117 47.9
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 2.9e-24 115.5 94 61.7
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 8.6e-24 114.0 106 50.0
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 4.7e-22 108.2 96 55.2
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 6.1e-22 107.8 160 39.4
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 6.1e-22 107.8 117 44.4
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 3.4e-20 102.1 165 38.2
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 4.4e-20 101.7 103 48.5
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 9.8e-20 100.5 95 51.6
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 3.7e-19 98.6 94 53.2
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 3.7e-19 98.6 94 51.1
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 4.9e-19 98.2 94 54.3
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 8.3e-19 97.4 94 52.1
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 2.4e-18 95.9 125 42.4
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.2e-17 93.6 92 50.0
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 1.6e-17 93.2 92 50.0
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 1.6e-17 93.2 94 50.0
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 2.7e-17 92.4 96 46.9
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 4.6e-17 91.7 94 48.9
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 4.6e-17 91.7 94 47.9
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 7.8e-17 90.9 92 52.2
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 1.1e-15 87.0 90 48.9
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 1.5e-15 86.7 109 41.3
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 1.5e-15 86.7 94 45.7
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 1.8e-13 79.7 76 55.3
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.0e-12 76.3 70 55.7
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 3.7e-11 72.0 94 40.4
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 8.3e-11 70.9 91 42.9
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.4e-10 70.1 120 36.7
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 5.0e-08 61.6 56 48.2


User provided reference genes

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