Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 0.0e+00 1644.8 820 100.0
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 1.6e-280 969.5 844 58.8
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 1.3e-279 966.5 840 58.8
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.3e-279 965.7 850 57.5
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 1.5e-278 963.0 831 58.6
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 2.5e-278 962.2 875 56.3
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 7.3e-278 960.7 839 57.9
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 1.2e-277 959.9 820 59.6
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 2.1e-277 959.1 840 58.2
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 2.8e-277 958.7 909 55.4
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 8.1e-277 957.2 884 57.2
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 8.1e-277 957.2 864 56.2
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 2.3e-276 955.7 839 57.4
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 6.8e-276 954.1 820 59.4
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 1.5e-275 953.0 889 55.3
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 2.0e-275 952.6 844 56.9
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 2.0e-275 952.6 851 57.6
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 4.4e-275 951.4 848 57.2
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 5.8e-275 951.0 834 58.6
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 7.6e-275 950.7 854 56.4
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 1.7e-274 949.5 842 58.1
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 3.8e-274 948.3 839 57.7
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 6.4e-274 947.6 864 57.8
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 1.1e-273 946.8 839 58.3
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 2.4e-273 945.7 830 57.6
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 5.4e-273 944.5 867 56.2
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 1.2e-272 943.3 853 57.0
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 1.6e-272 943.0 834 57.1
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 4.6e-272 941.4 841 56.8
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 6.0e-272 941.0 844 56.2
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 6.0e-272 941.0 871 55.5
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 1.0e-271 940.3 851 56.3
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 1.3e-271 939.9 821 57.9
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 1.3e-271 939.9 877 56.0
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 6.6e-271 937.6 861 56.6
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 6.6e-271 937.6 825 57.7
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 1.9e-270 936.0 826 57.4
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 5.6e-270 934.5 799 59.2
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 9.6e-270 933.7 877 54.6
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.2e-269 933.3 845 56.4
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 2.1e-269 932.6 854 57.0
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 2.8e-269 932.2 863 55.5
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 2.8e-269 932.2 852 55.9
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 3.6e-269 931.8 878 55.0
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 3.6e-269 931.8 831 57.5
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 4.7e-269 931.4 863 55.6
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 4.7e-269 931.4 838 56.4
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 6.2e-269 931.0 821 57.6
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.4e-268 929.9 845 56.3
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 6.9e-268 927.5 878 54.2
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 3.4e-267 925.2 855 56.1
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 3.4e-267 925.2 877 55.0
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 3.4e-267 925.2 863 55.0
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 4.4e-267 924.9 877 54.7
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 5.8e-267 924.5 884 54.5
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 7.6e-267 924.1 838 56.3
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 9.9e-267 923.7 915 53.2
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 2.2e-266 922.5 859 55.9
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 2.9e-266 922.2 873 54.2
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 6.4e-266 921.0 889 53.7
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 6.4e-266 921.0 896 53.9
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 7.1e-265 917.5 873 54.5
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 7.1e-265 917.5 872 55.5
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 1.6e-264 916.4 874 54.1
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 2.1e-264 916.0 885 54.0
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 2.7e-264 915.6 814 57.2
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 2.7e-264 915.6 868 55.3
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 3.5e-264 915.2 910 53.3
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.0e-263 913.7 861 55.9
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 1.3e-263 913.3 882 53.6
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 1.3e-263 913.3 883 53.6
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 5.1e-263 911.4 902 52.5
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 1.1e-262 910.2 883 53.5
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 3.3e-262 908.7 852 54.8
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 9.6e-262 907.1 878 53.3
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 1.8e-260 902.9 793 57.8
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 2.4e-260 902.5 891 53.2
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 4.0e-260 901.7 911 52.3
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 4.0e-260 901.7 933 51.1
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 6.9e-260 901.0 880 54.2
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 9.0e-260 900.6 887 53.6
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 1.2e-259 900.2 881 53.5
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 1.5e-259 899.8 934 51.3
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 2.0e-259 899.4 898 52.6
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 2.6e-259 899.0 894 52.9
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 4.5e-259 898.3 844 55.3
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 5.8e-259 897.9 889 52.5
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 7.6e-259 897.5 870 54.8
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.1e-257 893.6 842 55.6
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 2.4e-257 892.5 806 56.6
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 9.3e-257 890.6 836 54.3
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 4.6e-256 888.3 880 52.5
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 3.9e-255 885.2 824 55.8
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 1.9e-254 882.9 889 52.1
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.5e-254 882.5 859 54.6
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 9.6e-254 880.6 882 52.9
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 2.1e-253 879.4 892 52.5
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 1.4e-252 876.7 874 53.8
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.4e-252 875.9 859 54.5
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 9.0e-252 874.0 861 54.8
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 1.5e-251 873.2 874 53.5
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 2.0e-251 872.8 877 54.2
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 3.4e-251 872.1 874 53.4
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 4.9e-250 868.2 928 50.5
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 4.9e-250 868.2 896 51.6
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 6.4e-250 867.8 918 50.9
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 3.2e-249 865.5 928 50.3
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 1.6e-245 853.2 843 53.1
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 1.1e-244 850.5 966 48.8
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.2e-243 847.0 823 54.1
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 1.3e-242 843.6 784 55.6
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 3.8e-242 842.0 741 57.6
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 1.4e-241 840.1 998 46.1
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 6.9e-228 794.7 821 52.1
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 5.3e-220 768.5 872 48.4
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 1.0e-215 754.2 696 56.6
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 3.9e-215 752.3 687 57.6
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 1.1e-212 744.2 699 55.4
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.2e-208 730.7 718 54.3
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 6.1e-208 728.4 702 55.1
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 4.2e-201 705.7 597 59.8
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 4.4e-198 695.7 631 58.0
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 4.8e-197 692.2 830 46.6
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.4e-196 689.9 500 64.8
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 1.0e-183 647.9 809 45.9
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 2.6e-158 563.5 859 40.3
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.1e-138 496.1 396 60.1
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 8.7e-138 495.4 700 39.9
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.0e-135 486.5 388 59.5
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 2.0e-134 484.2 367 62.1
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 2.2e-133 480.7 525 51.4
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 7.9e-131 472.2 1006 33.5
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.6e-129 466.1 354 61.3
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.9e-124 451.1 346 61.8
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 8.5e-117 425.6 557 45.2
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.3e-113 413.7 428 53.0
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 5.1e-106 389.8 1051 29.7
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.5e-97 361.7 301 58.8
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 8.8e-90 335.9 419 46.1
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 7.2e-84 316.2 299 53.8
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 7.7e-78 296.2 466 41.0
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.7e-61 241.9 550 32.9
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.3e-58 231.5 332 43.4
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 4.4e-49 200.7 161 58.4
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 5.2e-42 177.2 328 38.1
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 1.4e-39 169.1 122 62.3
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.5e-36 159.1 114 64.0
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 4.2e-31 141.0 98 65.3
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 1.5e-25 122.5 90 64.4
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 5.4e-23 114.0 100 54.0
Pp3c2_5440 Physcomitrium patens HOM05D001476 ORTHO05D313068 1.1e-20 106.3 63 90.5
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 1.2e-17 96.3 66 63.6
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 6.5e-16 90.5 86 54.7
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 3.5e-14 84.7 55 67.3
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 3.5e-14 84.7 54 64.8
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.2e-09 69.7 131 33.6
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-08 66.2 63 52.4
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.3e-08 66.2 52 51.9
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 1.4e-07 62.8 58 53.4
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 7.1e-07 60.5 63 49.2
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 2.1e-06 58.9 45 55.6


User provided reference genes

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