Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_3940 Physcomitrium patens HOM05D003372 ORTHO05D025751 4.2e-40 167.5 82 100.0
QL11p041455 Quercus lobata HOM05D003372 ORTHO05D004539 1.0e-09 66.6 44 72.7
SMO343G0072 Selaginella moellendorffii HOM05D003372 ORTHO05D004539 1.0e-09 66.6 45 71.1
SMO367G0888 Selaginella moellendorffii HOM05D003372 ORTHO05D004539 1.0e-09 66.6 45 71.1
FvH4_2g07930 Fragaria vesca HOM05D003372 ORTHO05D004539 1.7e-09 65.9 46 67.4
FAN15G2510 Fragaria x ananassa HOM05D003372 ORTHO05D004539 1.7e-09 65.9 46 67.4
FAN20G1903 Fragaria x ananassa HOM05D003372 ORTHO05D004539 1.7e-09 65.9 46 67.4
FAN24G2951 Fragaria x ananassa HOM05D003372 ORTHO05D004539 1.7e-09 65.9 46 67.4
FAN27G0530 Fragaria x ananassa HOM05D003372 ORTHO05D004539 1.7e-09 65.9 46 67.4
Prupe.8G105800 Prunus persica HOM05D003372 ORTHO05D004539 1.7e-09 65.9 46 67.4
QL11p040128 Quercus lobata HOM05D003372 ORTHO05D004539 1.7e-09 65.9 46 69.6
QL11p041692 Quercus lobata HOM05D003372 ORTHO05D004539 1.7e-09 65.9 46 69.6
RcHm_v2.0_Chr6g0262391 Rosa chinensis HOM05D003372 ORTHO05D004539 1.7e-09 65.9 46 67.4
AL7G16920 Arabidopsis lyrata HOM05D003372 ORTHO05D004539 2.9e-09 65.1 46 67.4
AT4G34350 Arabidopsis thaliana HOM05D003372 ORTHO05D004539 2.9e-09 65.1 46 67.4
CAN.G322.105 Capsicum annuum HOM05D003372 ORTHO05D004539 2.9e-09 65.1 44 72.7
Manes.15G147700 Manihot esculenta HOM05D003372 ORTHO05D004539 2.9e-09 65.1 46 67.4
Nitab4.5_0004280g0070 Nicotiana tabacum HOM05D003372 ORTHO05D004539 2.9e-09 65.1 44 72.7
Nitab4.5_0004287g0090 Nicotiana tabacum HOM05D003372 ORTHO05D004539 2.9e-09 65.1 44 72.7
Peaxi162Scf00016g01127 Petunia axillaris HOM05D003372 ORTHO05D004539 2.9e-09 65.1 44 72.7
PGR042G2159 Punica granatum HOM05D003372 ORTHO05D004539 2.9e-09 65.1 46 65.2
SGA_v2.0_scaffold58G20576 Striga asiatica HOM05D003372 ORTHO05D004539 2.9e-09 65.1 46 67.4
Aqoxy5G01718 Aquilegia oxysepala HOM05D003372 ORTHO05D004539 3.8e-09 64.7 46 65.2
Cfa004972 Carpinus fangiana HOM05D003372 ORTHO05D004539 3.8e-09 64.7 44 72.7
CiPaw.05G060700 Carya illinoinensis HOM05D003372 ORTHO05D004539 3.8e-09 64.7 44 72.7
Haze_02422 Corylus avellana HOM05D003372 ORTHO05D004539 3.8e-09 64.7 44 72.7
Eucgr.I01241 Eucalyptus grandis HOM05D003372 ORTHO05D004539 3.8e-09 64.7 46 67.4
Lsat_1_v5_gn_9_109300 Lactuca sativa HOM05D003372 ORTHO05D004539 3.8e-09 64.7 46 67.4
Lj3g0010099 Lotus japonicus HOM05D003372 ORTHO05D004539 3.8e-09 64.7 44 70.5
MD05G1071900 Malus domestica HOM05D003372 ORTHO05D004539 3.8e-09 64.7 46 65.2
MD10G1082800 Malus domestica HOM05D003372 ORTHO05D004539 3.8e-09 64.7 46 65.2
SGA_v2.0_scaffold32G13142 Striga asiatica HOM05D003372 ORTHO05D004539 3.8e-09 64.7 46 67.4
TAR628G0478 Trochodendron aralioides HOM05D003372 ORTHO05D004539 3.8e-09 64.7 46 67.4
HanXRQChr16g0505031 Helianthus annuus HOM05D003372 ORTHO05D004539 5.0e-09 64.3 46 63.0
Potri.009G111569 Populus trichocarpa HOM05D003372 ORTHO05D004539 5.0e-09 64.3 46 67.4
Potri.T124604 Populus trichocarpa HOM05D003372 ORTHO05D004539 5.0e-09 64.3 46 67.4
SalBow6G6275 Salvia bowleyana HOM05D003372 ORTHO05D004539 5.0e-09 64.3 46 65.2
Thecc.02G121400 Theobroma cacao HOM05D003372 ORTHO05D004539 5.0e-09 64.3 46 67.4
TWI31G0489 Tripterygium wilfordii HOM05D003372 ORTHO05D004539 5.0e-09 64.3 46 67.4
CBR_g30116 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-09 63.9 46 65.2
Medtr4g069070 Medicago truncatula HOM05D003372 ORTHO05D004539 6.5e-09 63.9 46 67.4
Sc08g0000280 Simmondsia chinensis HOM05D003372 ORTHO05D004539 6.5e-09 63.9 45 68.9
COL.COLO4_32468 Corchorus olitorius HOM05D003372 ORTHO05D004539 8.4e-09 63.5 46 65.2
Dinv42096 Davidia involucrata HOM05D003372 ORTHO05D004539 8.4e-09 63.5 44 70.5
Sabra09G0085200 Salix brachista HOM05D003372 ORTHO05D004539 8.4e-09 63.5 46 67.4
Atru.chr5.2925 Acer truncatum HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 60.9
Aa31LG2G16230 Aethionema arabicum HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 65.2
CANSAT25G3185 Cannabis sativa HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 65.2
Ca_20842_v3 Cicer arietinum L. HOM05D003372 ORTHO05D004539 1.1e-08 63.2 44 70.5
Ciclev10028350m.g Citrus clementina HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 65.2
Ciclev10028381m.g Citrus clementina HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 65.2
Ciclev10029878m.g Citrus clementina HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 65.2
Dinv23560 Davidia involucrata HOM05D003372 ORTHO05D004539 1.1e-08 63.2 44 68.2
Duzib052G0241 Durio zibethinus HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 65.2
ECA236G0098 Erigeron canadensis HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 63.0
Gohir.A13G048200 Gossypium hirsutum HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 63.0
Gohir.D13G046600 Gossypium hirsutum HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 63.0
Gorai.013G052300 Gossypium raimondii HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 63.0
HanXRQChr08g0216551 Helianthus annuus HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 63.0
HanXRQChr16g0505021 Helianthus annuus HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 63.0
Hma1.2p1_0584F.1_g183510 Hydrangea macrophylla HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 63.0
Lsat_1_v5_gn_7_89801 Lactuca sativa HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 63.0
QL11p040938 Quercus lobata HOM05D003372 ORTHO05D000018 1.1e-08 63.2 46 65.2
Sed0014801 Sechium edule HOM05D003372 ORTHO05D004539 1.1e-08 63.2 46 65.2
VMungo1127G0238 Vigna mungo HOM05D003372 ORTHO05D004539 1.1e-08 63.2 45 66.7
Carub.0007s0598 Capsella rubella HOM05D003372 ORTHO05D004539 1.4e-08 62.8 46 65.2
Glyma.11G120900 Glycine max HOM05D003372 ORTHO05D004539 1.4e-08 62.8 45 66.7
Gohir.A12G018100 Gossypium hirsutum HOM05D003372 ORTHO05D004539 1.4e-08 62.8 45 66.7
Gohir.D12G018700 Gossypium hirsutum HOM05D003372 ORTHO05D004539 1.4e-08 62.8 45 66.7
Gorai.008G019000 Gossypium raimondii HOM05D003372 ORTHO05D004539 1.4e-08 62.8 45 66.7
Lsat_1_v5_gn_4_6280 Lactuca sativa HOM05D003372 ORTHO05D025751 1.4e-08 62.8 45 66.7
Lsat_1_v5_gn_7_89821 Lactuca sativa HOM05D003372 ORTHO05D004539 1.4e-08 62.8 46 60.9
Lsat_1_v5_gn_8_5720 Lactuca sativa HOM05D003372 ORTHO05D025751 1.4e-08 62.8 46 60.9
Lj5C201T11 Lonicera japonica HOM05D003372 ORTHO05D004539 1.4e-08 62.8 44 68.2
MBI16_g10983_MAGBIO Magnolia biondii HOM05D003372 ORTHO05D004539 1.4e-08 62.8 46 63.0
Medtr4g069030 Medicago truncatula HOM05D003372 ORTHO05D004539 1.4e-08 62.8 44 70.5
Oeu027591.1 Olea europaea HOM05D003372 ORTHO05D004539 1.4e-08 62.8 44 68.2
Psat7g185200 Pisum sativum HOM05D003372 ORTHO05D004539 1.4e-08 62.8 44 70.5
Psat7g185320 Pisum sativum HOM05D003372 ORTHO05D004539 1.4e-08 62.8 44 70.5
TPR.G28053 Trifolium pratense HOM05D003372 ORTHO05D004539 1.4e-08 62.8 44 70.5
BcaB03g11839 Brassica carinata HOM05D003372 ORTHO05D004539 1.9e-08 62.4 46 65.2
BcaC01g00910 Brassica carinata HOM05D003372 ORTHO05D004539 1.9e-08 62.4 46 65.2
A01p04090 Brassica napus HOM05D003372 ORTHO05D004539 1.9e-08 62.4 46 65.2
A08p16910 Brassica napus HOM05D003372 ORTHO05D004539 1.9e-08 62.4 46 65.2
C01p04450 Brassica napus HOM05D003372 ORTHO05D004539 1.9e-08 62.4 46 65.2
C03p85850 Brassica napus HOM05D003372 ORTHO05D004539 1.9e-08 62.4 46 65.2
BolC1t00431H Brassica oleracea HOM05D003372 ORTHO05D004539 1.9e-08 62.4 46 65.2
BraA01t00397Z Brassica rapa HOM05D003372 ORTHO05D004539 1.9e-08 62.4 46 65.2
BraA08t33655Z Brassica rapa HOM05D003372 ORTHO05D004539 1.9e-08 62.4 46 65.2
Migut.B00274 Erythranthe guttata HOM05D003372 ORTHO05D004539 1.9e-08 62.4 46 65.2
Thhalv10025124m.g Eutrema salsugineum HOM05D003372 ORTHO05D004539 1.9e-08 62.4 46 65.2
SalBow6G0842 Salvia bowleyana HOM05D003372 ORTHO05D004539 1.9e-08 62.4 46 63.0
unitig_0.g69 Utricularia gibba HOM05D003372 ORTHO05D004539 1.9e-08 62.4 46 60.9
arahy.Tifrunner.gnm1.ann1.3X9B1A Arachis hypogaea HOM05D003372 ORTHO05D004539 2.5e-08 62.0 46 65.2
arahy.Tifrunner.gnm1.ann1.VN2ELX Arachis hypogaea HOM05D003372 ORTHO05D004539 2.5e-08 62.0 46 65.2
CARHR242430 Cardamine hirsuta HOM05D003372 ORTHO05D004539 2.5e-08 62.0 46 65.2
Eucgr.C00644 Eucalyptus grandis HOM05D003372 ORTHO05D004539 2.5e-08 62.0 46 63.0
Gohir.A03G180200 Gossypium hirsutum HOM05D003372 ORTHO05D004539 2.5e-08 62.0 46 63.0
Gohir.D02G203028 Gossypium hirsutum HOM05D003372 ORTHO05D004539 2.5e-08 62.0 46 63.0
Gorai.005G229100 Gossypium raimondii HOM05D003372 ORTHO05D004539 2.5e-08 62.0 46 63.0
Manes.17G098700 Manihot esculenta HOM05D003372 ORTHO05D004539 2.5e-08 62.0 46 63.0
Mapoly0048s0083 Marchantia polymorpha HOM05D003372 ORTHO05D004539 2.5e-08 62.0 46 65.2
Nn5g29484 Nelumbo nucifera HOM05D003372 ORTHO05D004539 2.5e-08 62.0 46 63.0
Hund06217 Selenicereus undatus HOM05D003372 ORTHO05D004539 2.5e-08 62.0 46 65.2
TWI79G0015 Tripterygium wilfordii HOM05D003372 ORTHO05D004539 2.5e-08 62.0 46 65.2
Cpa.g.sc62.104 Carica papaya HOM05D003372 ORTHO05D004539 3.2e-08 61.6 45 64.4
CDE02G0624 Ceratophyllum demersum HOM05D003372 ORTHO05D004539 3.2e-08 61.6 46 63.0
MELO3C018407.2 Cucumis melo HOM05D003372 ORTHO05D004539 3.2e-08 61.6 44 68.2
DCAR_022092 Daucus carota HOM05D003372 ORTHO05D004539 3.2e-08 61.6 44 65.9
HanXRQChr14g0460791 Helianthus annuus HOM05D003372 ORTHO05D004539 3.2e-08 61.6 46 60.9
Lalb_Chr03g0025841 Lupinus albus HOM05D003372 ORTHO05D004539 3.2e-08 61.6 44 68.2
Lalb_Chr01g0002771 Lupinus albus HOM05D003372 ORTHO05D004539 4.2e-08 61.2 46 60.9
QL11p042219 Quercus lobata HOM05D003372 ORTHO05D004539 4.2e-08 61.2 46 60.9
Rhsim11G0172900 Rhododendron simsii HOM05D003372 ORTHO05D004539 4.2e-08 61.2 44 63.6
Actinidia00496 Actinidia chinensis HOM05D003372 ORTHO05D004539 5.5e-08 60.8 44 65.9
EL10Ac9g21764 Beta vulgaris HOM05D003372 ORTHO05D004539 5.5e-08 60.8 45 62.2
CDE01G0637 Ceratophyllum demersum HOM05D003372 ORTHO05D004539 5.5e-08 60.8 46 63.0
Ciclev10028384m.g Citrus clementina HOM05D003372 ORTHO05D004539 5.5e-08 60.8 46 63.0
Duzib132G0112 Durio zibethinus HOM05D003372 ORTHO05D004539 5.5e-08 60.8 46 60.9
Phvul.011G047900 Phaseolus vulgaris HOM05D003372 ORTHO05D004539 5.5e-08 60.8 46 60.9
Rhsim11G0173000 Rhododendron simsii HOM05D003372 ORTHO05D004539 5.5e-08 60.8 44 65.9
Sp7g32140 Schrenkiella parvula HOM05D003372 ORTHO05D004539 5.5e-08 60.8 46 63.0
GSVIVG01031908001 Vitis vinifera HOM05D003372 ORTHO05D004539 5.5e-08 60.8 44 65.9
Potri.004G150400 Populus trichocarpa HOM05D003372 ORTHO05D004539 7.1e-08 60.5 46 63.0
HanXRQChr09g0250651 Helianthus annuus HOM05D003372 ORTHO05D004539 9.3e-08 60.1 46 58.7
Ah.01g019670 Amaranthus hybridus HOM05D003372 ORTHO05D004539 1.2e-07 59.7 45 62.2
ATR0733G156 Amborella trichopoda HOM05D003372 ORTHO05D004539 1.2e-07 59.7 46 63.0
ClCG02G005330 Citrullus lanatus HOM05D003372 ORTHO05D004539 1.2e-07 59.7 44 65.9
DCAR_022093 Daucus carota HOM05D003372 ORTHO05D004539 1.2e-07 59.7 44 65.9
HPP92_007695 Vanilla planifolia HOM05D003372 ORTHO05D004539 1.2e-07 59.7 46 60.9
MSTRG.16789 Avicennia marina HOM05D003372 ORTHO05D004539 1.6e-07 59.3 46 60.9
Cc02_g17960 Coffea canephora HOM05D003372 ORTHO05D004539 1.6e-07 59.3 44 63.6
CsaV3_7G010240 Cucumis sativus L. HOM05D003372 ORTHO05D004539 1.6e-07 59.3 44 65.9
Glyma.12G046000 Glycine max HOM05D003372 ORTHO05D004539 1.6e-07 59.3 43 67.4
Oeu021891.1 Olea europaea HOM05D003372 ORTHO05D004539 1.6e-07 59.3 44 65.9
QL11p042019 Quercus lobata HOM05D003372 ORTHO05D000116 1.6e-07 59.3 46 67.4
Migut.B00272 Erythranthe guttata HOM05D003372 ORTHO05D004539 2.1e-07 58.9 46 60.9
Pp3c10_22080 Physcomitrium patens HOM05D003372 ORTHO05D004539 2.1e-07 58.9 35 77.1
QL11p041933 Quercus lobata HOM05D003372 ORTHO05D004539 2.1e-07 58.9 48 58.3
Lalb_Chr19g0138541 Lupinus albus HOM05D003372 ORTHO05D004539 2.7e-07 58.5 44 61.4
Medtr1g090787 Medicago truncatula HOM05D003372 ORTHO05D004539 2.7e-07 58.5 42 64.3
AUR62011363 Chenopodium quinoa HOM05D003372 ORTHO05D004539 3.5e-07 58.2 45 57.8
AUR62016698 Chenopodium quinoa HOM05D003372 ORTHO05D004539 3.5e-07 58.2 45 57.8
Oeu010563.1 Olea europaea HOM05D003372 ORTHO05D004539 3.5e-07 58.2 44 61.4
Sed0006571 Sechium edule HOM05D003372 ORTHO05D004539 3.5e-07 58.2 43 62.8
MSTRG.5388 Avicennia marina HOM05D003372 ORTHO05D004539 4.6e-07 57.8 46 60.9
ClCG00G005230 Citrullus lanatus HOM05D003372 ORTHO05D004539 4.6e-07 57.8 44 61.4
ClCG09G017830 Citrullus lanatus HOM05D003372 ORTHO05D004539 4.6e-07 57.8 44 61.4
RcHm_v2.0_Chr6g0262401 Rosa chinensis HOM05D003372 ORTHO05D004539 4.6e-07 57.8 46 58.7
SalBow6G6810 Salvia bowleyana HOM05D003372 ORTHO05D004539 4.6e-07 57.8 45 60.0
Solyc01g109300.3 Solanum lycopersicum HOM05D003372 ORTHO05D004539 4.6e-07 57.8 35 77.1
Sopen01g051490 Solanum pennellii HOM05D003372 ORTHO05D004539 4.6e-07 57.8 35 77.1
PGSC0003DMG400025165 Solanum tuberosum HOM05D003372 ORTHO05D004539 4.6e-07 57.8 35 77.1
THA.LOC104804358 Tarenaya hassleriana HOM05D003372 ORTHO05D004539 4.6e-07 57.8 46 58.7
vmacro02147 Vaccinium macrocarpon HOM05D003372 ORTHO05D004539 4.6e-07 57.8 44 61.4
CsaV3_2G014440 Cucumis sativus L. HOM05D003372 ORTHO05D004539 6.1e-07 57.4 44 61.4
Os03g0731900 Oryza sativa ssp. japonica HOM05D003372 ORTHO05D004539 6.1e-07 57.4 44 63.6
THA.LOC104819599 Tarenaya hassleriana HOM05D003372 ORTHO05D004539 6.1e-07 57.4 46 58.7
Cre08.g372950 Chlamydomonas reinhardtii HOM05D003372 ORTHO05D004539 1.0e-06 56.6 45 53.3
PSO170G0120 Papaver somniferum HOM05D003372 ORTHO05D004539 1.0e-06 56.6 35 74.3
PSO700G0135 Papaver somniferum HOM05D003372 ORTHO05D004539 1.0e-06 56.6 35 74.3
Rhsim03G0115600 Rhododendron simsii HOM05D003372 ORTHO05D004539 1.8e-06 55.8 43 62.8
ECA240G3281 Erigeron canadensis HOM05D003372 ORTHO05D004539 2.3e-06 55.5 46 54.3
MCO16G504 Micromonas commoda HOM05D003372 ORTHO05D004539 2.3e-06 55.5 46 50.0
Hund29766 Selenicereus undatus HOM05D003372 ORTHO05D004539 2.3e-06 55.5 46 54.3
Hund29768 Selenicereus undatus HOM05D003372 ORTHO05D004539 2.3e-06 55.5 46 54.3
Oeu047352.1 Olea europaea HOM05D003372 ORTHO05D004539 3.9e-06 54.7 41 63.4
AagrBONN_evm.TU.Sc2ySwM_344.2188 Anthoceros agrestis HOM05D003372 ORTHO05D004539 5.1e-06 54.3 46 56.5
SEGI_14759 Sequoiadendron giganteum HOM05D003372 ORTHO05D004539 5.1e-06 54.3 46 52.2
SEGI_04933 Sequoiadendron giganteum HOM05D003372 ORTHO05D004539 6.7e-06 53.9 35 65.7
SEGI_11258 Sequoiadendron giganteum HOM05D003372 ORTHO05D004539 6.7e-06 53.9 35 65.7


User provided reference genes

Program Settings