Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 2.7e-256 888.3 479 100.0
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 4.1e-156 555.4 482 61.4
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 6.8e-151 538.1 336 78.6
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 3.5e-147 525.8 336 76.2
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 1.4e-143 513.8 466 59.4
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.5e-142 510.4 457 57.5
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 2.6e-142 509.6 460 59.6
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 3.4e-142 509.2 465 59.1
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.4e-142 508.8 462 58.0
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.4e-142 508.8 462 58.0
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 9.9e-142 507.7 460 59.1
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 8.4e-141 504.6 464 58.4
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 1.1e-140 504.2 477 56.6
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 1.1e-140 504.2 458 58.5
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.4e-140 503.8 462 58.4
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 1.4e-140 503.8 465 57.4
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.9e-140 503.4 460 58.0
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 1.9e-140 503.4 468 58.5
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 7.1e-140 501.5 464 57.8
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 9.3e-140 501.1 459 58.2
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.2e-139 500.7 457 58.0
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.2e-139 500.7 459 58.0
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 2.1e-139 500.0 349 68.8
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 2.1e-139 500.0 459 57.7
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 2.1e-139 500.0 464 57.5
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 2.7e-139 499.6 457 58.6
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 3.5e-139 499.2 461 58.6
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 4.6e-139 498.8 457 58.4
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 6.0e-139 498.4 460 57.2
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 7.8e-139 498.0 477 56.6
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 7.8e-139 498.0 459 59.7
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.0e-138 497.7 463 60.9
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 1.0e-138 497.7 457 57.5
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.0e-138 497.7 458 61.1
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 1.7e-138 496.9 467 59.1
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.7e-138 496.9 457 60.4
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 2.3e-138 496.5 461 57.0
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 3.0e-138 496.1 473 60.0
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 3.9e-138 495.7 484 55.8
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 5.1e-138 495.4 464 59.3
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 5.1e-138 495.4 477 56.4
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 6.6e-138 495.0 461 57.3
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 8.7e-138 494.6 351 68.9
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.1e-137 494.2 468 58.3
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.1e-137 494.2 339 71.1
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 1.9e-137 493.4 345 69.3
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 2.5e-137 493.0 458 59.8
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 3.3e-137 492.7 458 57.6
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.3e-137 492.7 457 58.4
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 3.3e-137 492.7 350 68.3
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 4.3e-137 492.3 458 59.6
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 4.3e-137 492.3 464 61.2
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 5.6e-137 491.9 351 68.9
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 5.6e-137 491.9 461 57.3
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 5.6e-137 491.9 458 56.8
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 9.6e-137 491.1 457 59.1
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 9.6e-137 491.1 351 67.8
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.3e-136 490.7 345 68.1
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.6e-136 490.3 350 67.7
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.6e-136 490.3 472 58.1
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.1e-136 490.0 470 58.7
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.1e-136 490.0 350 68.6
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 2.8e-136 489.6 459 58.2
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 2.8e-136 489.6 348 68.7
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 4.8e-136 488.8 458 58.3
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 4.8e-136 488.8 461 57.0
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 8.1e-136 488.0 460 58.9
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 8.1e-136 488.0 460 58.9
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 1.1e-135 487.6 457 59.1
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.4e-135 487.3 457 57.1
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 1.4e-135 487.3 459 56.0
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.8e-135 486.9 350 68.0
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 3.1e-135 486.1 338 69.2
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 5.3e-135 485.3 465 55.9
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 6.9e-135 485.0 470 58.7
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 9.0e-135 484.6 351 67.8
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 1.5e-134 483.8 465 56.1
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 1.5e-134 483.8 465 56.1
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.5e-134 483.8 457 56.0
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 2.0e-134 483.4 457 56.5
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 2.0e-134 483.4 402 60.4
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 2.6e-134 483.0 336 69.9
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 3.4e-134 482.6 464 55.6
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 4.4e-134 482.3 415 59.3
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 4.4e-134 482.3 466 57.1
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 4.4e-134 482.3 459 58.4
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 7.6e-134 481.5 476 55.5
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.6e-134 481.5 457 56.2
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.6e-134 481.5 457 56.5
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 7.6e-134 481.5 460 56.1
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.7e-133 480.3 493 54.4
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 2.2e-133 479.9 464 55.8
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 2.9e-133 479.6 462 55.6
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 8.4e-133 478.0 461 58.6
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 1.9e-132 476.9 467 54.8
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 2.4e-132 476.5 516 52.9
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 3.2e-132 476.1 355 66.8
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 4.2e-132 475.7 351 66.4
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 4.2e-132 475.7 465 55.7
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 5.4e-132 475.3 356 65.7
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 9.3e-132 474.6 459 57.5
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.3e-132 474.6 462 55.6
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 9.3e-132 474.6 506 53.6
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 2.1e-131 473.4 342 68.1
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 2.7e-131 473.0 457 57.8
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 2.7e-131 473.0 459 54.9
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 3.5e-131 472.6 350 66.3
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 4.6e-131 472.2 457 57.1
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 6.0e-131 471.9 350 66.3
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.1e-129 467.6 465 54.2
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 3.3e-129 466.1 472 55.1
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 9.6e-129 464.5 470 55.3
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 1.3e-128 464.2 274 78.5
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 8.1e-128 461.5 460 56.1
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 6.9e-127 458.4 447 58.6
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 3.4e-126 456.1 409 58.2
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 3.4e-126 456.1 274 77.4
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 6.4e-125 451.8 465 56.1
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 4.2e-124 449.1 457 53.6
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 6.0e-123 445.3 460 54.8
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 7.9e-123 444.9 443 53.7
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.0e-122 444.5 476 52.3
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.0e-122 444.5 470 55.1
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 8.7e-122 441.4 420 57.4
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 4.0e-119 432.6 463 52.9
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 1.9e-116 423.7 490 52.2
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 7.1e-116 421.8 494 51.2
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.5e-113 413.3 274 72.3
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 2.5e-113 413.3 457 51.2
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 2.0e-110 403.7 464 50.9
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 7.6e-110 401.7 434 54.8
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 5.0e-109 399.1 345 60.0
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 7.9e-107 391.7 352 58.2
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 1.0e-106 391.3 391 53.5
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.6e-104 384.0 438 50.7
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.6e-104 384.0 336 59.5
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.9e-101 373.2 336 59.8
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.3e-96 355.5 356 52.2
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.9e-93 346.7 543 43.5
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 3.9e-90 336.3 370 52.2
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.7e-89 331.6 438 45.7
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 2.2e-85 320.5 457 44.4
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.5e-84 315.8 433 45.0
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 5.2e-82 309.3 273 59.7
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.2e-76 290.0 293 52.9
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 4.1e-71 273.1 164 78.7
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.6e-57 227.3 402 37.6
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.8e-43 180.6 169 59.8
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 7.5e-41 172.6 471 35.0
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 5.4e-31 139.8 81 81.5
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 8.9e-26 122.5 357 31.1
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.2e-25 122.1 235 40.4
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 3.8e-24 117.1 134 49.3
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 4.5e-17 93.6 108 48.1
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 9.9e-17 92.4 108 48.1
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.7e-08 65.1 209 30.6


User provided reference genes

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