Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 9.5e-107 390.2 198 100.0
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 9.5e-107 390.2 198 100.0
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 1.7e-55 219.9 195 56.9
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 2.9e-55 219.2 190 58.4
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 4.2e-54 215.3 196 55.1
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 2.3e-52 209.5 196 53.1
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.5e-51 206.8 199 51.8
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.3e-50 203.8 199 51.8
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.1e-49 200.7 196 50.0
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 1.8e-49 199.9 199 51.3
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 1.8e-49 199.9 195 52.3
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 1.8e-49 199.9 197 49.7
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 2.4e-49 199.5 197 50.8
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 5.3e-49 198.4 198 49.0
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 7.7e-48 194.5 203 50.7
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 1.0e-47 194.1 199 50.8
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.3e-47 193.7 173 55.5
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.7e-47 193.4 196 50.0
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 3.8e-47 192.2 199 49.2
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 5.0e-47 191.8 199 48.2
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 1.4e-46 190.3 199 48.2
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.4e-46 190.3 199 47.7
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 1.9e-46 189.9 195 47.7
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.9e-46 189.9 201 46.8
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.5e-46 189.5 194 50.5
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 3.2e-46 189.1 201 47.3
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 9.4e-46 187.6 200 49.0
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 1.2e-45 187.2 200 46.0
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.6e-45 186.8 200 46.0
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.6e-45 186.8 199 47.7
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 2.7e-45 186.0 202 48.0
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 2.7e-45 186.0 197 46.2
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 4.6e-45 185.3 202 48.0
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 7.9e-45 184.5 201 48.3
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.4e-44 183.7 201 48.8
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 1.4e-44 183.7 202 48.0
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 1.4e-44 183.7 201 48.3
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 1.4e-44 183.7 197 45.7
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.8e-44 183.3 199 48.2
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 2.3e-44 183.0 197 47.7
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 2.3e-44 183.0 200 47.0
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 8.8e-44 181.0 200 47.5
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.8e-44 181.0 199 47.7
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.8e-44 181.0 199 47.7
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 1.1e-43 180.6 201 47.8
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.5e-43 180.3 197 43.7
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 1.5e-43 180.3 201 47.3
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 1.5e-43 180.3 200 48.5
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 4.3e-43 178.7 203 45.3
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.7e-43 178.3 202 44.6
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 5.7e-43 178.3 202 44.6
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 9.7e-43 177.6 199 47.2
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.3e-42 177.2 201 45.8
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.7e-42 176.8 232 41.8
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 2.2e-42 176.4 195 45.1
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 2.2e-42 176.4 231 41.6
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.2e-42 176.4 201 44.3
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.8e-42 176.0 191 48.7
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 2.8e-42 176.0 169 52.7
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.8e-42 175.3 197 42.6
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 6.3e-42 174.9 203 45.8
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 6.3e-42 174.9 225 43.1
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 6.3e-42 174.9 203 44.8
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.1e-41 174.1 201 44.3
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.1e-41 174.1 190 44.2
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 1.8e-41 173.3 192 43.2
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.8e-41 173.3 202 43.6
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.4e-41 172.9 222 41.4
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 3.1e-41 172.6 200 43.5
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 4.1e-41 172.2 183 48.1
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 4.1e-41 172.2 225 41.3
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 5.3e-41 171.8 200 43.5
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 5.3e-41 171.8 205 44.4
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 5.3e-41 171.8 200 48.0
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 6.9e-41 171.4 203 44.3
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 6.9e-41 171.4 192 43.2
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 9.1e-41 171.0 192 42.7
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 1.5e-40 170.2 200 43.0
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 1.5e-40 170.2 200 43.0
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 2.0e-40 169.9 203 42.9
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 2.0e-40 169.9 232 41.8
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 2.0e-40 169.9 228 41.2
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 2.0e-40 169.9 228 40.8
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 3.4e-40 169.1 203 43.8
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 3.4e-40 169.1 200 44.5
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 5.9e-40 168.3 137 56.9
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 5.9e-40 168.3 194 46.4
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 7.7e-40 167.9 203 45.3
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 7.7e-40 167.9 198 42.9
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.0e-39 167.5 198 42.9
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.0e-39 167.5 198 42.9
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.3e-39 167.2 203 43.8
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 2.9e-39 166.0 224 41.5
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 3.8e-39 165.6 203 43.3
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 3.8e-39 165.6 225 41.3
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 3.8e-39 165.6 203 43.8
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 6.5e-39 164.9 202 43.1
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 8.5e-39 164.5 229 40.6
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.4e-38 163.7 194 44.8
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 4.2e-38 162.2 201 42.8
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 4.2e-38 162.2 201 42.8
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 5.5e-38 161.8 201 41.8
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 1.2e-37 160.6 203 40.9
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 2.1e-37 159.8 193 42.5
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 2.1e-37 159.8 147 53.1
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 3.6e-37 159.1 247 38.5
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 4.7e-37 158.7 153 52.3
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 6.1e-37 158.3 201 41.8
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 1.8e-36 156.8 196 44.4
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 6.7e-36 154.8 194 42.8
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 6.7e-36 154.8 194 41.8
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 3.3e-35 152.5 194 42.3
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 3.3e-35 152.5 229 38.0
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 7.4e-35 151.4 116 60.3
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 4.8e-34 148.7 180 43.9
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 8.2e-34 147.9 191 41.9
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 2.4e-33 146.4 268 34.3
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 5.3e-33 145.2 195 39.5
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 5.3e-33 145.2 196 41.3
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 1.6e-32 143.7 146 50.7
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 4.5e-32 142.1 194 38.1
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 3.2e-30 136.0 195 37.9
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 9.4e-30 134.4 195 37.4
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 9.4e-30 134.4 145 49.0
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 2.1e-29 133.3 149 46.3
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 2.3e-28 129.8 199 37.2
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.3e-28 129.8 197 39.1
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 3.0e-28 129.4 196 35.7
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 4.0e-28 129.0 150 42.0
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.1e-27 127.5 119 50.4
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 2.2e-26 123.2 202 39.1
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 2.4e-25 119.8 149 44.3
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.5e-24 115.9 190 37.9
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 1.0e-23 114.4 95 57.9
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.2e-23 113.2 119 44.5
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.2e-23 113.2 135 43.7
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 4.2e-22 109.0 120 48.3
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 9.4e-22 107.8 156 39.7
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 3.6e-21 105.9 175 34.9
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.4e-20 104.0 192 34.4
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.0e-20 102.4 197 34.0
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 1.5e-19 100.5 110 40.0
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 2.6e-19 99.8 205 37.1
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 6.3e-18 95.1 111 40.5
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.1e-17 94.4 199 32.7
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 5.4e-17 92.0 82 56.1
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 5.5e-14 82.0 114 40.4
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 7.2e-14 81.6 59 64.4
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.4e-11 72.8 87 46.0
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.4e-11 72.4 57 61.4
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 5.7e-11 72.0 127 37.0
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 9.8e-11 71.2 114 36.0
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 4.9e-10 68.9 185 30.3
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.4e-09 67.4 197 28.4
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 3.8e-07 59.3 107 35.5


User provided reference genes

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