Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 0.0e+00 1192.6 587 100.0
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 1.3e-172 610.5 587 50.9
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 3.2e-158 562.8 587 49.4
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 3.5e-157 559.3 540 51.9
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 1.1e-150 537.7 541 49.9
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 1.9e-150 537.0 540 50.4
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 3.2e-150 536.2 539 49.4
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 4.2e-150 535.8 534 51.1
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 9.3e-150 534.6 577 46.8
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 9.3e-150 534.6 573 46.9
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 4.6e-149 532.3 540 49.1
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 6.0e-149 531.9 537 50.3
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 8.7e-148 528.1 571 47.3
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 8.7e-148 528.1 549 47.5
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 8.7e-148 528.1 582 47.6
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 4.3e-147 525.8 538 48.7
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 2.1e-146 523.5 534 49.8
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 6.2e-146 521.9 541 48.6
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 6.2e-146 521.9 534 49.1
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 8.1e-146 521.5 534 48.9
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 1.4e-145 520.8 543 49.0
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 6.9e-145 518.5 540 48.3
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 1.2e-144 517.7 534 49.3
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 1.2e-144 517.7 534 48.5
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 1.5e-144 517.3 537 47.9
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 1.5e-144 517.3 575 45.7
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 2.6e-144 516.5 540 49.4
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 1.7e-143 513.8 559 46.3
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 2.2e-143 513.5 577 46.3
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 2.9e-143 513.1 576 46.5
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 3.8e-143 512.7 534 48.5
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 3.8e-143 512.7 583 46.5
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.1e-142 511.1 540 46.5
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 1.9e-142 510.4 534 48.1
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 4.2e-142 509.2 544 48.2
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 5.4e-142 508.8 534 48.5
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 5.4e-142 508.8 576 45.3
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 7.1e-142 508.4 546 47.6
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 7.1e-142 508.4 572 46.5
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 7.1e-142 508.4 538 48.3
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 4.6e-141 505.8 534 47.8
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 4.6e-141 505.8 538 48.0
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 7.9e-141 505.0 576 44.6
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 1.3e-140 504.2 535 47.9
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 2.3e-140 503.4 534 47.9
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 3.0e-140 503.1 535 47.3
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 6.6e-140 501.9 534 47.8
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 1.1e-139 501.1 534 47.6
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 1.1e-139 501.1 535 47.9
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 1.5e-139 500.7 563 46.4
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 2.5e-139 500.0 555 46.7
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.5e-139 500.0 535 47.3
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 4.3e-139 499.2 534 47.8
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 5.6e-139 498.8 534 47.6
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 7.4e-139 498.4 545 47.5
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 7.4e-139 498.4 537 47.5
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 7.4e-139 498.4 534 47.4
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 9.6e-139 498.0 534 47.6
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 1.6e-138 497.3 536 47.6
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 2.8e-138 496.5 538 48.1
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 3.6e-138 496.1 535 47.5
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 6.2e-138 495.4 534 47.2
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 1.1e-137 494.6 536 47.0
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.8e-137 493.8 542 47.2
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 3.1e-137 493.0 576 45.7
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 3.1e-137 493.0 565 46.2
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 1.5e-136 490.7 552 46.2
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 1.5e-136 490.7 568 46.3
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.3e-135 487.6 575 43.5
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 2.2e-135 486.9 534 47.2
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 4.9e-135 485.7 599 43.7
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 5.5e-134 482.3 511 47.6
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 7.1e-134 481.9 534 46.6
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 4.8e-130 469.2 543 45.9
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 2.6e-128 463.4 512 46.5
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 4.5e-128 462.6 660 39.4
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 5.8e-128 462.2 463 49.5
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 6.0e-125 452.2 463 48.4
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 1.1e-123 448.0 531 43.5
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 5.7e-123 445.7 461 47.5
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 7.4e-123 445.3 462 48.1
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 1.4e-121 441.0 463 47.5
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 2.9e-119 433.3 428 50.0
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 2.1e-117 427.2 508 45.1
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 1.5e-112 411.0 561 41.5
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 3.2e-110 403.3 587 40.2
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 3.6e-109 399.8 470 44.9
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 4.6e-109 399.4 395 49.6
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 3.9e-108 396.4 456 44.7
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 2.2e-106 390.6 543 40.3
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 1.3e-103 381.3 462 43.3
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 8.0e-93 345.5 396 44.4
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 1.8e-92 344.4 533 39.8
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 3.3e-91 340.1 363 47.4
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.7e-90 337.8 342 50.0
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 2.2e-90 337.4 587 37.8
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.6e-85 321.2 355 44.8
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 3.0e-84 317.0 477 37.7
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 8.3e-82 308.9 296 50.0
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 4.7e-69 266.5 503 36.4
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 4.9e-66 256.5 263 49.4
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.1e-65 255.4 266 48.1
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 7.8e-64 249.2 476 37.0
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 1.7e-63 248.1 263 46.8
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 1.6e-61 241.5 236 48.7
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 5.2e-60 236.5 408 36.5
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 1.2e-59 235.3 549 32.1
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 2.9e-58 230.7 248 48.0
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 9.8e-51 205.7 622 28.5
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 9.8e-51 205.7 546 31.1
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 3.2e-49 200.7 461 34.1
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 1.1e-41 175.6 175 50.9
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 5.2e-36 156.8 157 49.0
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 9.3e-33 146.0 146 47.9
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 1.4e-20 105.5 112 49.1
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 5.8e-19 100.1 118 48.3
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 2.9e-18 97.8 80 57.5
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 1.4e-17 95.5 104 41.3
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 3.2e-17 94.4 122 41.8
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 9.3e-17 92.8 80 50.0
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.0e-15 87.8 134 40.3
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.7e-13 80.9 110 40.9
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 3.1e-12 77.8 534 23.4
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 4.5e-11 73.9 135 35.6
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.0e-10 72.8 115 38.3
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.2e-10 71.6 117 36.8
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 2.7e-08 64.7 58 51.7
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.0e-07 62.8 95 40.0
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.3e-07 62.4 87 35.6
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.8e-07 62.0 62 53.2
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 2.3e-07 61.6 58 44.8


User provided reference genes

Program Settings