Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 4139.0 2107 100.0
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 2301.2 2129 60.5
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 5.4e-293 1012.3 1042 52.7
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 4.5e-255 886.3 1043 47.3
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 5.2e-235 819.7 1044 45.7
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 2.5e-213 747.7 1067 41.2
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 2.1e-212 744.6 1043 42.8
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 5.2e-211 740.0 1091 40.9
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 8.9e-211 739.2 1046 41.4
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 1.5e-210 738.4 1051 41.4
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 3.4e-210 737.3 1046 42.1
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 6.4e-209 733.0 1040 41.7
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 6.4e-209 733.0 1042 41.5
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 1.1e-208 732.3 1046 41.8
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 1.1e-208 732.3 1045 42.2
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 1.2e-207 728.8 1043 42.2
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 2.7e-207 727.6 1046 41.6
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 3.5e-207 727.2 1047 41.7
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 3.5e-207 727.2 1049 42.1
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 7.8e-207 726.1 1039 41.3
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 1.7e-206 724.9 1047 41.4
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 3.0e-206 724.2 1048 42.4
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 8.6e-206 722.6 1044 41.1
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 1.5e-205 721.8 1050 41.6
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 9.5e-205 719.2 1038 41.2
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 3.6e-204 717.2 1041 41.6
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 6.2e-204 716.5 1044 41.2
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 1.4e-203 715.3 1047 41.5
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 1.4e-203 715.3 1048 41.6
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 1.4e-203 715.3 1064 41.5
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 1.8e-203 714.9 1044 40.1
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 1.8e-203 714.9 1040 41.0
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.3e-203 714.5 1060 40.7
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.6e-202 711.1 1060 40.6
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 2.6e-202 711.1 1066 40.9
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 5.8e-202 709.9 1021 41.6
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 7.5e-202 709.5 1043 41.1
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 9.8e-202 709.1 1073 40.8
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.3e-201 708.8 1040 40.0
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 1.3e-201 708.8 1048 41.0
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 2.2e-201 708.0 1021 41.7
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 2.9e-201 707.6 1066 41.0
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 6.4e-201 706.4 1057 41.2
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 1.1e-200 705.7 1046 41.2
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 5.4e-200 703.4 1044 40.6
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 1.2e-199 702.2 1094 39.7
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 1.6e-199 701.8 1043 40.6
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.7e-198 698.4 1081 39.5
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 5.1e-198 696.8 1059 39.8
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 2.5e-197 694.5 1044 41.2
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 2.5e-197 694.5 1046 40.2
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 3.6e-196 690.6 1045 40.7
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 3.6e-196 690.6 1018 40.0
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 3.1e-195 687.6 1040 39.9
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 6.8e-195 686.4 1093 40.4
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 8.9e-195 686.0 1045 40.9
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 2.0e-194 684.9 1062 39.5
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 1.3e-193 682.2 1053 39.8
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 6.4e-193 679.9 1042 40.0
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 8.4e-193 679.5 1041 40.2
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.9e-192 678.3 1059 39.3
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 1.9e-192 678.3 1043 40.3
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 2.4e-192 677.9 1058 38.2
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 5.4e-192 676.8 1066 40.3
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 1.2e-191 675.6 1041 39.5
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 1.6e-191 675.2 1043 39.4
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 1.6e-191 675.2 1017 40.7
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.6e-191 675.2 1070 38.8
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 1.3e-190 672.2 1041 38.9
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 1.1e-189 669.1 1075 38.6
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 6.2e-188 663.3 1055 39.1
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 3.1e-187 661.0 1074 39.4
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 1.2e-186 659.1 1042 38.8
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 2.0e-186 658.3 1058 40.0
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 1.2e-183 649.0 1058 38.0
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 3.5e-183 647.5 1038 38.4
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 7.8e-183 646.4 1038 38.2
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 8.7e-182 642.9 1039 38.4
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 8.7e-182 642.9 1042 38.6
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 5.6e-181 640.2 1091 37.7
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 4.6e-175 620.5 1053 39.1
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 8.7e-174 616.3 1042 37.3
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 1.5e-170 605.5 1216 34.5
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 1.5e-170 605.5 871 42.4
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 3.2e-160 571.2 1055 37.1
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 4.2e-160 570.9 787 42.7
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 4.8e-156 557.4 729 43.2
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 5.9e-154 550.4 859 39.5
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 5.0e-153 547.4 754 40.8
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 2.2e-145 521.9 597 47.4
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 2.5e-144 518.5 1479 28.8
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 6.1e-143 513.8 600 46.5
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 7.9e-143 513.5 792 39.9
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 1.5e-138 499.2 600 47.3
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 6.1e-119 434.1 764 36.1
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.0e-118 433.3 731 36.8
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 4.8e-116 424.5 1041 31.0
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 2.7e-114 418.7 1012 31.7
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 2.5e-112 412.1 1041 30.6
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.4e-110 406.4 740 36.1
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 3.0e-81 308.9 409 41.8
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 2.1e-58 233.0 403 37.5
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 2.2e-52 213.0 313 40.9
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 6.5e-44 184.9 322 37.3
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 3.2e-43 182.6 244 44.3
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.3e-39 170.6 216 43.1
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 6.9e-38 164.9 304 35.9
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 2.2e-36 159.8 149 56.4
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.8e-33 150.2 228 39.9
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.1e-33 148.7 157 50.3
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 4.1e-30 139.0 204 41.7
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 9.1e-30 137.9 186 40.9
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 5.0e-28 132.1 138 50.0
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 3.0e-25 122.9 208 37.0
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 6.3e-23 115.2 331 28.7
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 1.3e-20 107.5 91 56.0
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 2.2e-20 106.7 1027 23.2
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 2.9e-20 106.3 421 24.9
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 1.1e-19 104.4 118 50.8
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.4e-19 104.0 135 45.2
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 1.9e-19 103.6 329 29.2
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 4.7e-18 99.0 97 53.6
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 3.9e-17 95.9 210 34.8
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 5.3e-14 85.5 68 58.8
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 5.5e-11 75.5 318 27.4
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 7.2e-11 75.1 140 36.4
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 7.2e-11 75.1 151 35.8
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 2.3e-09 70.1 75 44.0
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 5.2e-09 68.9 131 32.8
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 2.6e-08 66.6 63 52.4
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 4.8e-07 62.4 65 49.2


User provided reference genes

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