Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.5e-237 825.1 431 100.0
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 8.5e-201 703.7 429 84.6
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 2.0e-165 586.3 429 69.0
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.1e-163 578.6 350 84.6
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 8.3e-140 501.1 433 60.5
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 7.0e-139 498.0 433 60.3
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 3.0e-137 492.7 432 60.6
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.9e-136 490.0 432 60.4
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 1.9e-136 490.0 432 59.5
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.6e-135 486.9 433 59.1
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 3.1e-134 482.6 435 60.5
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.1e-134 482.6 433 58.7
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 6.8e-134 481.5 432 59.0
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.0e-133 479.9 435 59.1
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.0e-133 479.9 463 56.6
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 2.6e-133 479.6 432 58.8
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 4.4e-133 478.8 433 58.9
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 7.5e-133 478.0 407 61.2
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 9.9e-133 477.6 434 56.9
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 5.4e-131 471.9 431 56.4
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 3.5e-130 469.2 433 57.7
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 7.8e-130 468.0 431 58.0
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.0e-129 467.6 439 56.7
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 1.3e-129 467.2 431 56.6
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 3.0e-129 466.1 435 58.4
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 5.1e-129 465.3 431 57.5
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 4.3e-128 462.2 431 55.9
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 5.6e-128 461.8 431 56.1
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.6e-127 460.3 433 57.0
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 2.8e-127 459.5 432 56.5
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 2.8e-127 459.5 430 57.7
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 4.7e-127 458.8 443 56.7
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 6.2e-127 458.4 427 55.7
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 6.2e-127 458.4 431 56.1
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 8.1e-127 458.0 431 56.6
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 8.1e-127 458.0 433 56.8
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 8.1e-127 458.0 430 57.0
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.1e-126 457.6 432 56.0
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.4e-126 457.2 435 55.4
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 2.4e-126 456.4 431 56.1
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 3.1e-126 456.1 431 55.7
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 8.9e-126 454.5 444 54.5
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.2e-125 454.1 381 61.7
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.5e-125 453.8 433 56.8
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 2.0e-125 453.4 435 54.7
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 2.6e-125 453.0 430 56.3
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 3.4e-125 452.6 431 56.4
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 4.4e-125 452.2 460 53.9
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 7.6e-125 451.4 430 55.8
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 7.6e-125 451.4 430 56.0
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.3e-124 450.7 434 56.9
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 1.3e-124 450.7 431 55.2
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.2e-124 449.9 430 56.3
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 4.9e-124 448.7 435 55.4
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 8.4e-124 448.0 379 60.4
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 8.4e-124 448.0 379 60.4
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 1.1e-123 447.6 419 56.1
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.9e-123 446.8 422 56.4
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.9e-123 446.8 434 55.5
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 1.9e-123 446.8 434 55.5
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 3.2e-123 446.0 435 55.2
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.0e-121 441.0 450 51.8
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 3.9e-121 439.1 451 52.5
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 5.1e-121 438.7 437 56.3
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 5.1e-121 438.7 381 60.9
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 5.1e-121 438.7 430 55.1
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 4.3e-120 435.6 431 54.5
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 7.3e-120 434.9 432 53.5
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 2.1e-119 433.3 432 55.6
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 4.8e-119 432.2 436 53.4
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 8.1e-119 431.4 435 52.6
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 2.4e-118 429.9 423 54.8
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 3.1e-118 429.5 434 53.2
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 5.3e-118 428.7 352 63.4
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 7.6e-117 424.9 445 51.0
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 8.4e-116 421.4 428 52.3
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 3.2e-115 419.5 428 51.9
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.2e-114 417.5 429 52.9
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.3e-113 414.1 432 52.5
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.3e-113 414.1 430 51.9
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 1.7e-113 413.7 399 54.1
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 2.3e-113 413.3 432 52.1
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 6.6e-113 411.8 430 51.4
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 3.3e-112 409.5 435 53.8
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 4.3e-112 409.1 356 61.8
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 2.8e-111 406.4 456 48.0
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 2.8e-111 406.4 413 54.2
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.1e-110 404.4 381 56.7
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.8e-110 403.7 382 55.8
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 5.3e-110 402.1 428 51.2
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 2.6e-109 399.8 442 50.2
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.7e-108 397.1 444 49.5
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 8.4e-108 394.8 448 49.1
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 8.4e-108 394.8 432 51.2
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 1.1e-107 394.4 449 49.0
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.9e-107 393.7 449 48.8
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.9e-107 393.7 387 53.5
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 4.6e-106 389.0 370 55.7
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.8e-105 387.1 431 51.0
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 3.0e-105 386.3 402 53.2
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 8.7e-105 384.8 433 50.6
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 2.5e-104 383.3 331 61.6
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 4.0e-102 375.9 352 56.8
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 6.9e-102 375.2 435 47.6
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.2e-101 374.4 339 59.0
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.2e-100 370.2 420 48.1
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.9e-99 367.1 393 50.6
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 5.5e-99 365.5 393 50.4
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 7.1e-99 365.2 280 67.5
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-98 364.4 306 61.1
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.6e-98 364.0 384 50.5
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.3e-97 360.1 389 53.2
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 3.3e-96 356.3 430 50.0
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.5e-93 347.4 294 61.9
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 3.4e-93 346.3 364 49.5
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 4.5e-93 345.9 393 49.1
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.7e-92 344.0 357 50.7
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.9e-88 330.5 326 54.3
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 4.1e-86 322.8 385 47.3
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.0e-85 320.5 464 43.5
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.7e-76 290.8 321 48.9
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.8e-70 270.8 385 46.2
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.8e-70 270.8 327 45.9
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 7.0e-70 268.9 158 86.1
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 3.3e-64 250.0 154 80.5
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.7e-64 249.2 176 72.2
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.4e-64 248.8 155 79.4
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 9.7e-64 248.4 154 79.9
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 2.2e-63 247.3 155 79.4
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.6e-58 229.9 145 77.9
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 1.0e-57 228.4 286 46.5
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.5e-56 224.6 508 36.4
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.5e-56 224.6 140 79.3
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.0e-56 224.2 277 45.5
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 8.3e-55 218.8 351 38.2
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 8.3e-55 218.8 277 45.5
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 7.0e-54 215.7 277 44.4
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.6e-53 214.5 290 42.4
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.3e-52 211.5 132 81.1
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.9e-51 207.6 276 41.7
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 9.4e-51 205.3 228 47.4
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 4.0e-49 199.9 183 57.4
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 3.4e-48 196.8 124 76.6
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 1.3e-47 194.9 182 55.5
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 6.6e-44 182.6 212 47.2
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 8.6e-44 182.2 131 74.0
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.1e-38 165.2 98 84.7
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 2.4e-38 164.1 173 48.6
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 2.7e-37 160.6 252 39.3
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 4.6e-37 159.8 178 51.7
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 9.5e-35 152.1 229 41.0
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 2.1e-34 151.0 131 58.0
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 4.0e-33 146.7 106 67.9
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 8.9e-33 145.6 366 31.4
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 3.2e-30 137.1 465 26.9
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 7.0e-30 136.0 146 52.1
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 1.6e-26 124.8 138 44.9
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.3e-25 120.9 226 37.6
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 6.0e-21 106.3 68 79.4
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 8.6e-20 102.4 58 89.7
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 1.2e-18 98.6 215 33.5
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 6.2e-18 96.3 55 90.9
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 3.9e-12 77.0 113 38.9
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 4.0e-09 67.0 355 25.9
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 5.2e-09 66.6 57 52.6
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 8.4e-07 59.3 99 32.3


User provided reference genes

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