Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 0.0e+00 1164.1 610 100.0
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 4.3e-134 482.6 574 50.9
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 1.1e-124 451.4 438 55.7
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.0e-114 418.3 575 47.0
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 3.8e-114 416.4 416 54.6
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 6.3e-109 399.1 410 52.4
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 9.1e-108 395.2 415 52.8
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 2.2e-106 390.6 420 52.6
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 1.5e-105 387.9 420 51.9
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.2e-105 386.3 428 50.9
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 5.5e-105 386.0 413 50.4
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 7.2e-105 385.6 442 50.0
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 1.6e-104 384.4 441 48.5
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 1.6e-104 384.4 441 48.3
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 1.6e-104 384.4 414 51.4
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 4.7e-104 382.9 413 50.6
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 4.7e-104 382.9 411 49.9
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 1.4e-103 381.3 439 48.5
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.3e-103 380.6 353 54.4
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.3e-103 380.6 413 50.4
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 2.3e-103 380.6 440 49.8
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.0e-103 380.2 413 50.1
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 4.0e-103 379.8 440 49.8
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 5.2e-103 379.4 413 49.4
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 5.2e-103 379.4 415 51.3
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 6.8e-103 379.0 413 50.1
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 8.8e-103 378.6 446 48.7
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 2.6e-102 377.1 448 48.2
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 3.4e-102 376.7 445 48.8
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 3.4e-102 376.7 438 49.1
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 4.4e-102 376.3 532 44.7
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 7.5e-102 375.6 413 49.9
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 1.3e-101 374.8 445 47.2
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.3e-101 374.8 413 49.9
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 1.3e-101 374.8 412 49.3
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.2e-101 374.0 412 49.3
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 2.2e-101 374.0 432 49.1
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 4.8e-101 372.9 414 50.0
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 4.8e-101 372.9 414 50.5
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 6.3e-101 372.5 438 48.2
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 8.3e-101 372.1 413 49.6
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 8.3e-101 372.1 412 49.0
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 8.3e-101 372.1 410 50.2
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 8.3e-101 372.1 410 50.2
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 1.4e-100 371.3 414 50.5
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.4e-100 371.3 413 48.9
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.8e-100 370.9 428 47.4
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.8e-100 370.9 414 50.5
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.4e-100 370.5 374 51.9
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 5.4e-100 369.4 417 49.4
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 1.2e-99 368.2 442 48.9
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 1.2e-99 368.2 442 48.2
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 1.6e-99 367.9 413 50.1
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.0e-99 367.5 415 50.4
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 3.5e-99 366.7 417 49.2
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 4.5e-99 366.3 413 49.2
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 7.7e-99 365.5 341 54.0
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.0e-98 365.2 443 48.3
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 1.0e-98 365.2 414 49.0
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.0e-98 365.2 415 49.2
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.3e-98 364.8 423 48.2
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 1.3e-98 364.8 417 49.6
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.3e-98 364.8 414 49.8
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 1.3e-98 364.8 342 53.2
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 1.7e-98 364.4 412 49.3
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.9e-98 363.6 471 45.6
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 6.5e-98 362.5 492 47.0
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 6.5e-98 362.5 412 48.8
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 8.5e-98 362.1 415 47.7
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 1.1e-97 361.7 535 44.9
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.5e-97 361.3 406 48.3
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 2.5e-97 360.5 415 48.9
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.5e-97 360.5 396 51.3
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 4.2e-97 359.8 442 45.9
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 9.4e-97 358.6 392 49.7
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.6e-96 357.8 410 48.5
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 2.7e-96 357.1 413 48.2
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 3.6e-96 356.7 394 48.7
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 4.7e-96 356.3 413 48.7
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 4.7e-96 356.3 442 47.3
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 4.0e-95 353.2 368 50.5
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 5.2e-95 352.8 416 47.4
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.2e-94 351.7 412 48.5
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 1.5e-94 351.3 427 46.1
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.5e-94 351.3 386 48.2
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 2.6e-94 350.5 353 51.8
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.6e-94 350.5 417 48.0
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 5.7e-94 349.4 445 47.0
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 9.8e-94 348.6 412 46.8
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 9.8e-94 348.6 445 46.5
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 1.7e-93 347.8 382 49.5
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 2.8e-93 347.1 412 46.6
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 3.7e-93 346.7 444 44.6
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 6.3e-93 345.9 389 47.0
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 8.3e-93 345.5 449 45.2
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.1e-92 345.1 415 48.9
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.8e-92 344.4 448 46.0
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 3.1e-92 343.6 450 44.0
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 7.7e-91 339.0 441 45.4
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 7.7e-91 339.0 412 45.1
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.0e-90 338.6 429 44.3
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 8.6e-90 335.5 405 45.4
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 3.3e-89 333.6 439 44.6
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 3.3e-89 333.6 429 44.1
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 5.6e-89 332.8 506 40.5
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 1.6e-88 331.3 413 47.2
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 6.1e-88 329.3 365 48.2
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.5e-86 324.7 441 44.9
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 2.6e-86 323.9 318 52.2
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 3.4e-86 323.6 363 47.7
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 3.2e-84 317.0 439 44.6
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.7e-82 311.2 371 44.7
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 7.3e-81 305.8 348 47.7
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 9.5e-81 305.4 380 46.8
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 1.8e-79 301.2 274 57.7
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 4.4e-78 296.6 413 43.6
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 7.8e-67 259.2 333 42.9
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 1.3e-66 258.5 432 38.9
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 5.1e-66 256.5 240 53.8
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 9.5e-65 252.3 231 55.0
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.0e-62 244.6 287 47.0
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.2e-59 235.3 216 56.5
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.7e-58 231.5 361 40.7
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 6.6e-50 203.0 396 36.1
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 5.6e-49 199.9 315 36.8
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 3.1e-47 194.1 153 60.8
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 6.6e-42 176.4 151 56.3
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 9.9e-38 162.5 272 38.2
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 3.1e-31 141.0 183 43.7
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 4.2e-28 130.6 211 38.9
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 3.5e-27 127.5 356 27.8
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 3.9e-26 124.0 299 33.1
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 3.9e-26 124.0 208 37.5
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.9e-25 121.7 79 69.6
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.0e-22 111.7 533 24.8
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.9e-20 105.1 119 42.9
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 3.9e-18 97.4 96 52.1
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 6.3e-16 90.1 167 37.7
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 7.7e-14 83.2 80 52.5
Pp3c2_32970 Physcomitrium patens HOM05D005013 ORTHO05D318930 9.4e-12 76.3 64 59.4
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 6.1e-11 73.6 106 41.5
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.4e-10 72.4 106 40.6
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 8.8e-10 69.7 109 40.4
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 5.9e-06 57.0 44 54.5


User provided reference genes

Program Settings