Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_7360 Physcomitrium patens HOM05D002278 ORTHO05D005241 2.4e-30 134.8 65 100.0
Mapoly0181s0005 Marchantia polymorpha HOM05D002278 ORTHO05D005241 6.5e-12 73.6 49 73.5
SMO365G0036 Selaginella moellendorffii HOM05D002278 ORTHO05D005241 1.4e-11 72.4 48 72.9
TAR625G0861 Trochodendron aralioides HOM05D002278 ORTHO05D005241 2.5e-11 71.6 49 71.4
Nn1g05386 Nelumbo nucifera HOM05D002278 ORTHO05D005241 5.5e-11 70.5 49 69.4
Ca_15253_v3 Cicer arietinum L. HOM05D002278 ORTHO05D005241 7.2e-11 70.1 48 68.8
Ca_30277_v3 Cicer arietinum L. HOM05D002278 ORTHO05D005241 7.2e-11 70.1 48 68.8
Os10g0376200 Oryza sativa ssp. japonica HOM05D002278 ORTHO05D005241 9.3e-11 69.7 49 69.4
Zm00001eb027820 Zea mays HOM05D002278 ORTHO05D005241 9.3e-11 69.7 49 67.3
Zm00001eb401390 Zea mays HOM05D002278 ORTHO05D005241 9.3e-11 69.7 49 69.4
FvH4_5g37110 Fragaria vesca HOM05D002278 ORTHO05D005241 1.2e-10 69.3 48 70.8
FAN08G3415 Fragaria x ananassa HOM05D002278 ORTHO05D005241 1.2e-10 69.3 48 70.8
MBI05_g02439_MAGBIO Magnolia biondii HOM05D002278 ORTHO05D005241 1.6e-10 68.9 49 67.3
MBI05_g39047_MAGBIO Magnolia biondii HOM05D002278 ORTHO05D005241 1.6e-10 68.9 49 67.3
Psat0ss2010g0120 Pisum sativum HOM05D002278 ORTHO05D005241 1.6e-10 68.9 48 68.8
QL12p037001 Quercus lobata HOM05D002278 ORTHO05D005241 1.6e-10 68.9 49 67.3
arahy.Tifrunner.gnm1.ann1.D6EEK4 Arachis hypogaea HOM05D002278 ORTHO05D005241 2.1e-10 68.6 48 68.8
FAN18G3225 Fragaria x ananassa HOM05D002278 ORTHO05D005241 2.1e-10 68.6 48 70.8
Glyma.06G102700 Glycine max HOM05D002278 ORTHO05D005241 2.1e-10 68.6 48 68.8
Medtr3g074720 Medicago truncatula HOM05D002278 ORTHO05D005241 2.1e-10 68.6 48 68.8
Thecc.08G105400 Theobroma cacao HOM05D002278 ORTHO05D005241 2.1e-10 68.6 47 70.2
TPR.G26157 Trifolium pratense HOM05D002278 ORTHO05D005241 2.1e-10 68.6 48 68.8
A03p30510 Brassica napus HOM05D002278 ORTHO05D007219 3.5e-10 67.8 49 65.3
C03p36920 Brassica napus HOM05D002278 ORTHO05D007219 3.5e-10 67.8 49 65.3
BolC3t15999H Brassica oleracea HOM05D002278 ORTHO05D007219 3.5e-10 67.8 49 65.3
BraA03t12232Z Brassica rapa HOM05D002278 ORTHO05D007219 3.5e-10 67.8 49 65.3
CiPaw.07G178800 Carya illinoinensis HOM05D002278 ORTHO05D005241 3.5e-10 67.8 49 65.3
Glyma.04G101000 Glycine max HOM05D002278 ORTHO05D005241 3.5e-10 67.8 48 66.7
Phvul.009G031700 Phaseolus vulgaris HOM05D002278 ORTHO05D005241 3.5e-10 67.8 48 66.7
HPP92_019305 Vanilla planifolia HOM05D002278 ORTHO05D005241 3.5e-10 67.8 47 68.1
AUR62033726 Chenopodium quinoa HOM05D002278 ORTHO05D007219 4.6e-10 67.4 52 63.5
FAN13G1947 Fragaria x ananassa HOM05D002278 ORTHO05D005241 4.6e-10 67.4 48 68.8
Nitab4.5_0000232g0080 Nicotiana tabacum HOM05D002278 ORTHO05D005241 4.6e-10 67.4 53 64.2
Glyma.06G300800 Glycine max HOM05D002278 ORTHO05D007219 6.1e-10 67.0 49 65.3
Glyma.12G103900 Glycine max HOM05D002278 ORTHO05D007219 6.1e-10 67.0 49 65.3
CBR_g13023 Chara braunii HOM05D002278 ORTHO05D005241 7.9e-10 66.6 48 62.5
Duzib093G1829 Durio zibethinus HOM05D002278 ORTHO05D005241 7.9e-10 66.6 47 68.1
Peaxi162Scf00007g01817 Petunia axillaris HOM05D002278 ORTHO05D007219 7.9e-10 66.6 49 65.3
Peaxi162Scf00392g00317 Petunia axillaris HOM05D002278 ORTHO05D005241 7.9e-10 66.6 48 68.8
Hund26968 Selenicereus undatus HOM05D002278 ORTHO05D005241 7.9e-10 66.6 49 65.3
HPP92_014086 Vanilla planifolia HOM05D002278 ORTHO05D007219 7.9e-10 66.6 49 65.3
Cc05_g05690 Coffea canephora HOM05D002278 ORTHO05D007219 1.0e-09 66.2 56 58.9
Pp3c25_2420 Physcomitrium patens HOM05D002278 ORTHO05D005241 1.0e-09 66.2 49 69.4
arahy.Tifrunner.gnm1.ann1.LTHX1H Arachis hypogaea HOM05D002278 ORTHO05D005241 1.3e-09 65.9 48 64.6
Cc10_g07090 Coffea canephora HOM05D002278 ORTHO05D005241 1.3e-09 65.9 52 59.6
Rhsim04G0058800 Rhododendron simsii HOM05D002278 ORTHO05D007219 1.8e-09 65.5 54 57.4
RhsimUnG0197700 Rhododendron simsii HOM05D002278 ORTHO05D007219 1.8e-09 65.5 54 57.4
VMungo1309G1178 Vigna mungo HOM05D002278 ORTHO05D005241 1.8e-09 65.5 46 67.4
Actinidia10330 Actinidia chinensis HOM05D002278 ORTHO05D005241 2.3e-09 65.1 49 63.3
Actinidia30495 Actinidia chinensis HOM05D002278 ORTHO05D007219 2.3e-09 65.1 49 63.3
MSTRG.14169 Avicennia marina HOM05D002278 ORTHO05D007219 2.3e-09 65.1 49 63.3
Duzib116G0517 Durio zibethinus HOM05D002278 ORTHO05D005241 2.3e-09 65.1 47 63.8
Lsat_1_v5_gn_4_69721 Lactuca sativa HOM05D002278 ORTHO05D007219 2.3e-09 65.1 49 63.3
Solyc04g074270.3 Solanum lycopersicum HOM05D002278 ORTHO05D005241 2.3e-09 65.1 48 66.7
Sopen04g029400 Solanum pennellii HOM05D002278 ORTHO05D005241 2.3e-09 65.1 48 66.7
SGA_v2.0_scaffold49G18318 Striga asiatica HOM05D002278 ORTHO05D007219 2.3e-09 65.1 49 63.3
AL6G49670 Arabidopsis lyrata HOM05D002278 ORTHO05D007219 3.0e-09 64.7 49 61.2
CAN.G193.32 Capsicum annuum HOM05D002278 ORTHO05D005241 3.0e-09 64.7 48 66.7
CARHR251710 Cardamine hirsuta HOM05D002278 ORTHO05D007219 3.0e-09 64.7 49 61.2
Lj3g0009272 Lotus japonicus HOM05D002278 ORTHO05D007219 3.0e-09 64.7 49 63.3
Os03g0190300 Oryza sativa ssp. japonica HOM05D002278 ORTHO05D005241 3.0e-09 64.7 49 67.3
Sabra02G0076800 Salix brachista HOM05D002278 ORTHO05D005241 3.0e-09 64.7 48 66.7
Solyc07g053180.3 Solanum lycopersicum HOM05D002278 ORTHO05D007219 3.0e-09 64.7 49 61.2
PGSC0003DMG400031471 Solanum tuberosum HOM05D002278 ORTHO05D005241 3.0e-09 64.7 48 66.7
Ah.05g169880 Amaranthus hybridus HOM05D002278 ORTHO05D005241 3.9e-09 64.3 49 63.3
Duzib041G0062 Durio zibethinus HOM05D002278 ORTHO05D005241 3.9e-09 64.3 47 66.0
Lj1g0004815 Lotus japonicus HOM05D002278 ORTHO05D005241 5.1e-09 63.9 48 60.4
Lj1g0005597 Lotus japonicus HOM05D002278 ORTHO05D005241 5.1e-09 63.9 48 62.5
unitig_26.g9934 Utricularia gibba HOM05D002278 ORTHO05D008576 5.1e-09 63.9 49 61.2
AL2G38580 Arabidopsis lyrata HOM05D002278 ORTHO05D005241 6.7e-09 63.5 48 64.6
AT1G78230 Arabidopsis thaliana HOM05D002278 ORTHO05D005241 6.7e-09 63.5 48 64.6
C02p25950 Brassica napus HOM05D002278 ORTHO05D005241 6.7e-09 63.5 58 56.9
Carub.0002s2514 Capsella rubella HOM05D002278 ORTHO05D005241 6.7e-09 63.5 48 64.6
CARHR071690 Cardamine hirsuta HOM05D002278 ORTHO05D005241 6.7e-09 63.5 48 64.6
Ciclev10018305m.g Citrus clementina HOM05D002278 ORTHO05D007219 6.7e-09 63.5 49 61.2
Gohir.A05G225600 Gossypium hirsutum HOM05D002278 ORTHO05D005241 6.7e-09 63.5 47 63.8
Gohir.D05G228300 Gossypium hirsutum HOM05D002278 ORTHO05D005241 6.7e-09 63.5 47 63.8
Gorai.009G236200 Gossypium raimondii HOM05D002278 ORTHO05D005241 6.7e-09 63.5 47 63.8
Lalb_Chr08g0242091 Lupinus albus HOM05D002278 ORTHO05D005241 6.7e-09 63.5 48 62.5
MD09G1099100 Malus domestica HOM05D002278 ORTHO05D007219 6.7e-09 63.5 49 61.2
vmacro09308 Vaccinium macrocarpon HOM05D002278 ORTHO05D007219 6.7e-09 63.5 49 59.2
BcaB03g15998 Brassica carinata HOM05D002278 ORTHO05D005241 8.7e-09 63.2 48 64.6
BcaC08g47399 Brassica carinata HOM05D002278 ORTHO05D005241 8.7e-09 63.2 48 64.6
A07p43530 Brassica napus HOM05D002278 ORTHO05D005241 8.7e-09 63.2 48 64.6
BraA07t31865Z Brassica rapa HOM05D002278 ORTHO05D005241 8.7e-09 63.2 48 64.6
Thhalv10028489m.g Eutrema salsugineum HOM05D002278 ORTHO05D007219 8.7e-09 63.2 49 61.2
Lalb_Chr23g0270541 Lupinus albus HOM05D002278 ORTHO05D005241 8.7e-09 63.2 48 64.6
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 8.7e-09 63.2 49 59.2
Potri.005G164000 Populus trichocarpa HOM05D002278 ORTHO05D005241 8.7e-09 63.2 48 62.5
BcaB01g02515 Brassica carinata HOM05D002278 ORTHO05D007219 1.1e-08 62.8 49 59.2
COL.COLO4_12056 Corchorus olitorius HOM05D002278 ORTHO05D005241 1.1e-08 62.8 47 63.8
Glyma.13G089600 Glycine max HOM05D002278 ORTHO05D005241 1.1e-08 62.8 48 60.4
Glyma.14G174400 Glycine max HOM05D002278 ORTHO05D005241 1.1e-08 62.8 48 60.4
MD08G1184400 Malus domestica HOM05D002278 ORTHO05D005241 1.1e-08 62.8 46 63.0
ATR1132G090 Amborella trichopoda HOM05D002278 ORTHO05D007219 1.5e-08 62.4 49 61.2
CSS0019585 Camellia sinensis var. sinensis HOM05D002278 ORTHO05D005241 1.5e-08 62.4 49 59.2
CSS0021059 Camellia sinensis var. sinensis HOM05D002278 ORTHO05D005241 1.5e-08 62.4 49 59.2
Manes.18G066400 Manihot esculenta HOM05D002278 ORTHO05D005241 1.5e-08 62.4 48 66.7
TWI36G1031 Tripterygium wilfordii HOM05D002278 ORTHO05D005241 1.5e-08 62.4 48 64.6
Aqoxy4G00784 Aquilegia oxysepala HOM05D002278 ORTHO05D007219 1.9e-08 62.0 49 59.2
AT4G03260 Arabidopsis thaliana HOM05D002278 ORTHO05D007219 1.9e-08 62.0 49 59.2
Carub.0006s3380 Capsella rubella HOM05D002278 ORTHO05D007219 1.9e-08 62.0 49 59.2
Hma1.2p1_0575F.1_g181670 Hydrangea macrophylla HOM05D002278 ORTHO05D005241 1.9e-08 62.0 46 65.2
Medtr5g064040 Medicago truncatula HOM05D002278 ORTHO05D005241 1.9e-08 62.0 48 64.6
A09p02570 Brassica napus HOM05D002278 ORTHO05D007219 2.5e-08 61.6 49 59.2
C06p52170 Brassica napus HOM05D002278 ORTHO05D005241 2.5e-08 61.6 48 62.5
BolC6t40240H Brassica oleracea HOM05D002278 ORTHO05D005241 2.5e-08 61.6 48 62.5
BraA09t35903Z Brassica rapa HOM05D002278 ORTHO05D007219 2.5e-08 61.6 49 59.2
CsaV3_7G003980 Cucumis sativus L. HOM05D002278 ORTHO05D007219 2.5e-08 61.6 48 60.4
Phvul.008G173900 Phaseolus vulgaris HOM05D002278 ORTHO05D005241 2.5e-08 61.6 46 58.7
VMungo0647G1174 Vigna mungo HOM05D002278 ORTHO05D005241 2.5e-08 61.6 46 58.7
Aa31LG4G8250 Aethionema arabicum HOM05D002278 ORTHO05D005241 3.3e-08 61.2 48 62.5
BcaB01g01962 Brassica carinata HOM05D002278 ORTHO05D007219 3.3e-08 61.2 49 57.1
Nitab4.5_0007108g0010 Nicotiana tabacum HOM05D002278 ORTHO05D005241 3.3e-08 61.2 48 62.5
Duzib248G0068 Durio zibethinus HOM05D002278 ORTHO05D007219 4.3e-08 60.8 48 60.4
BcaC03g15051 Brassica carinata HOM05D002278 ORTHO05D005241 7.4e-08 60.1 48 62.5
BcaC04g23986 Brassica carinata HOM05D002278 ORTHO05D007219 7.4e-08 60.1 49 57.1
C09p02630 Brassica napus HOM05D002278 ORTHO05D007219 7.4e-08 60.1 49 57.1
BolC2t08672H Brassica oleracea HOM05D002278 ORTHO05D005241 7.4e-08 60.1 48 62.5
BolC9t53191H Brassica oleracea HOM05D002278 ORTHO05D007219 7.4e-08 60.1 49 57.1
Peaxi162Scf00937g00010 Petunia axillaris HOM05D002278 ORTHO05D005241 7.4e-08 60.1 48 60.4
Sp5g33370 Schrenkiella parvula HOM05D002278 ORTHO05D005241 7.4e-08 60.1 48 62.5
SpUn0091_0020 Schrenkiella parvula HOM05D002278 ORTHO05D005241 7.4e-08 60.1 48 62.5
Psat2g071800 Pisum sativum HOM05D002278 ORTHO05D005241 9.7e-08 59.7 48 60.4
MELO3C018781.2 Cucumis melo HOM05D002278 ORTHO05D007219 1.3e-07 59.3 48 58.3
Oeu053213.1 Olea europaea HOM05D002278 ORTHO05D005241 1.3e-07 59.3 47 61.7
PSO447G0245 Papaver somniferum HOM05D002278 ORTHO05D005241 1.3e-07 59.3 49 61.2
Sed0005855 Sechium edule HOM05D002278 ORTHO05D007219 1.3e-07 59.3 48 56.2
Dinv14339 Davidia involucrata HOM05D002278 ORTHO05D005241 1.6e-07 58.9 47 61.7
HanXRQChr05g0162691 Helianthus annuus HOM05D002278 ORTHO05D005241 1.6e-07 58.9 46 63.0
TPR.G34975 Trifolium pratense HOM05D002278 ORTHO05D005241 2.2e-07 58.5 48 58.3
Ca_19097_v3 Cicer arietinum L. HOM05D002278 ORTHO05D005241 2.8e-07 58.2 48 58.3
Prupe.3G227100 Prunus persica HOM05D002278 ORTHO05D007219 2.8e-07 58.2 49 57.1
Migut.H01194 Erythranthe guttata HOM05D002278 ORTHO05D007219 4.8e-07 57.4 51 54.9
Nitab4.5_0001948g0010 Nicotiana tabacum HOM05D002278 ORTHO05D005241 8.2e-07 56.6 48 58.3
TWI12G0495 Tripterygium wilfordii HOM05D002278 ORTHO05D005241 1.8e-06 55.5 48 62.5
BcaC01g06694 Brassica carinata HOM05D002278 ORTHO05D007219 2.4e-06 55.1 49 55.1
Nitab4.5_0006653g0060 Nicotiana tabacum HOM05D002278 ORTHO05D007219 2.4e-06 55.1 49 55.1
CAN.G640.24 Capsicum annuum HOM05D002278 ORTHO05D007219 3.1e-06 54.7 49 53.1
PGSC0003DMG400026180 Solanum tuberosum HOM05D002278 ORTHO05D007219 4.1e-06 54.3 49 53.1
unitig_52.g17338 Utricularia gibba HOM05D002278 ORTHO05D007219 5.3e-06 53.9 40 62.5


User provided reference genes

Program Settings