Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 0.0e+00 1453.3 753 100.0
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 0.0e+00 1453.3 753 100.0
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.9e-274 947.6 758 64.5
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.5e-245 853.2 727 59.8
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 4.4e-245 851.7 713 61.0
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 6.6e-225 784.6 710 57.5
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 6.6e-225 784.6 749 55.3
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 2.1e-223 779.6 754 55.2
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 4.4e-221 771.9 745 54.0
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 6.4e-220 768.1 736 53.9
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 6.4e-220 768.1 737 55.0
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 2.4e-219 766.1 755 53.1
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 2.4e-219 766.1 752 53.6
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 1.6e-218 763.5 756 54.2
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 2.1e-218 763.1 742 53.1
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.0e-217 760.8 752 52.7
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 3.0e-217 759.2 756 53.2
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 6.6e-217 758.1 717 55.1
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 1.5e-216 756.9 715 56.1
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 1.5e-216 756.9 748 54.7
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 1.9e-216 756.5 751 53.9
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 2.5e-216 756.1 717 54.1
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 2.1e-215 753.1 750 52.1
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 6.2e-215 751.5 696 55.5
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 1.4e-214 750.4 741 53.7
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 1.8e-214 750.0 717 54.7
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 2.3e-214 749.6 744 53.9
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 3.1e-214 749.2 751 52.7
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 5.2e-214 748.4 750 52.3
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 8.9e-214 747.7 751 52.9
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 1.2e-213 747.3 733 53.1
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.5e-213 746.9 747 53.4
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 2.0e-213 746.5 737 53.9
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 2.6e-213 746.1 739 53.6
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 2.6e-213 746.1 717 54.4
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 5.8e-213 745.0 752 51.9
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 7.6e-213 744.6 719 54.4
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 1.7e-212 743.4 754 52.7
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 1.7e-212 743.4 743 53.8
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 2.2e-212 743.0 707 55.6
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 2.2e-212 743.0 732 53.1
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 3.7e-212 742.3 751 52.3
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 4.9e-212 741.9 751 52.3
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 4.9e-212 741.9 737 54.0
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 6.4e-212 741.5 718 54.6
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 6.4e-212 741.5 738 53.4
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 8.4e-212 741.1 749 51.5
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 1.1e-211 740.7 751 52.2
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 1.1e-211 740.7 752 52.4
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 1.4e-211 740.3 756 51.5
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 1.4e-211 740.3 732 53.4
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 2.4e-211 739.6 730 53.6
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 3.2e-211 739.2 751 52.9
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 3.2e-211 739.2 746 52.5
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 4.1e-211 738.8 720 55.1
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 5.4e-211 738.4 747 53.4
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 7.1e-211 738.0 754 52.0
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 9.2e-211 737.6 751 52.3
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 9.2e-211 737.6 705 54.8
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 9.2e-211 737.6 735 53.9
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 1.6e-210 736.9 751 51.9
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 4.6e-210 735.3 700 55.3
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 2.3e-209 733.0 762 51.2
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 2.3e-209 733.0 735 53.2
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 2.5e-208 729.6 751 52.1
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 7.3e-208 728.0 739 52.8
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 1.2e-207 727.2 742 52.7
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 2.1e-207 726.5 727 53.4
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.2e-205 720.7 739 52.4
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 1.7e-204 716.8 739 52.1
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 3.8e-204 715.7 730 53.3
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 8.4e-204 714.5 753 51.1
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 7.1e-203 711.4 687 54.4
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 6.0e-202 708.4 758 50.5
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 1.3e-201 707.2 751 50.6
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 8.7e-201 704.5 751 51.1
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 1.1e-200 704.1 749 51.9
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 2.4e-198 696.4 749 50.3
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 2.4e-198 696.4 742 50.3
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 4.4e-197 692.2 750 49.9
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 3.8e-196 689.1 708 53.4
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 4.9e-196 688.7 629 56.9
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 6.4e-196 688.3 739 50.3
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 8.4e-196 688.0 647 54.9
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 4.2e-195 685.6 716 51.5
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 7.9e-194 681.4 740 50.1
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 7.9e-194 681.4 716 51.0
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.1e-192 677.6 752 50.0
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 9.6e-192 674.5 750 49.2
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 1.1e-190 671.0 625 55.2
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 2.4e-190 669.8 729 49.7
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 2.4e-190 669.8 610 55.1
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 1.2e-189 667.5 590 56.6
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 3.4e-189 666.0 717 51.0
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 4.5e-189 665.6 745 48.6
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 5.5e-187 658.7 716 50.8
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.7e-186 656.4 716 49.9
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 6.0e-186 655.2 720 49.7
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 7.9e-186 654.8 724 50.8
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 4.0e-182 642.5 674 51.0
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 4.9e-180 635.6 755 47.8
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 1.1e-179 634.4 750 48.4
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 3.2e-179 632.9 738 49.5
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 4.2e-179 632.5 858 43.7
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 1.5e-176 624.0 862 43.7
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 4.3e-176 622.5 611 54.3
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 1.6e-175 620.5 683 49.0
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 4.1e-174 615.9 710 48.9
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 9.0e-166 588.2 586 52.9
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 5.9e-165 585.5 636 50.8
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 1.3e-164 584.3 828 42.4
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.1e-160 571.2 579 53.5
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 4.1e-158 562.8 530 53.8
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 1.1e-152 544.7 779 41.5
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 1.2e-149 534.6 522 55.2
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 3.0e-145 520.0 738 43.6
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 2.2e-140 503.8 531 50.7
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 1.1e-139 501.5 546 51.1
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 2.9e-132 476.9 519 51.6
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 9.8e-128 461.8 561 48.5
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 1.2e-125 454.9 416 57.0
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 5.6e-123 446.0 418 56.7
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 2.6e-120 437.2 516 46.7
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 6.6e-116 422.5 366 58.2
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 2.9e-111 407.1 430 51.6
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 9.5e-107 392.1 340 60.0
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 4.3e-99 366.7 336 57.1
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 1.6e-98 364.8 364 53.0
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.9e-94 351.3 660 33.3
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.5e-93 347.1 689 31.9
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.3e-91 340.5 669 32.7
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.8e-89 334.7 659 32.2
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.0e-84 318.9 669 31.7
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 2.3e-84 317.8 318 53.8
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.4e-80 303.9 599 33.2
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.2e-77 295.4 650 32.2
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.9e-75 288.1 662 31.3
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.6e-75 286.6 602 29.7
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 1.6e-74 285.0 289 52.9
Gohir.D02G179566 Gossypium hirsutum HOM05D003674 ORTHO05D004226 5.8e-72 276.6 290 51.0
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 9.9e-72 275.8 263 55.5
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 6.4e-71 273.1 293 47.8
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 5.3e-65 253.4 589 31.1
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 4.2e-62 243.8 229 55.9
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 6.5e-55 219.9 466 32.6
CiPaw.04G126200 Carya illinoinensis HOM05D003674 ORTHO05D004226 5.7e-51 206.8 198 57.1
ATR0737G184 Amborella trichopoda HOM05D003674 ORTHO05D004226 9.7e-51 206.1 198 56.6
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 9.7e-51 206.1 212 51.9
Nn1g06549 Nelumbo nucifera HOM05D003674 ORTHO05D004226 1.8e-49 201.8 206 55.3
Nn1g06550 Nelumbo nucifera HOM05D003674 ORTHO05D004226 1.3e-47 195.7 171 53.2
vmacro12304 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 1.2e-45 189.1 182 51.6
Nitab4.5_0000638g0270 Nicotiana tabacum HOM05D003674 ORTHO05D004226 4.7e-37 160.6 181 48.1
Hma1.2p1_1836F.1_g304720 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 8.0e-37 159.8 124 64.5
MSTRG.14344 Avicennia marina HOM05D003674 ORTHO05D004226 3.9e-36 157.5 158 50.6
MSTRG.14339 Avicennia marina HOM05D003674 ORTHO05D004226 4.4e-35 154.1 125 61.6
Migut.H01179 Erythranthe guttata HOM05D003674 ORTHO05D004226 6.3e-34 150.2 138 52.9
SEGI_19203 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 7.7e-32 143.3 147 53.1
Hma1.2p1_1145F.1_g261410 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 8.5e-31 139.8 122 58.2
CDE08G1051 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 2.5e-30 138.3 145 53.1
Oeu010988.1 Olea europaea HOM05D003674 ORTHO05D004226 2.1e-29 135.2 121 56.2
Ca_01497_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 1.0e-28 132.9 340 34.7
PGSC0003DMG400018342 Solanum tuberosum HOM05D003674 ORTHO05D004226 1.4e-28 132.5 154 44.8
SHI10399 Sapria himalayana HOM05D003674 ORTHO05D004226 2.3e-28 131.7 284 32.7
Hma1.2p1_1836F.1_g304700 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.6e-27 128.3 141 49.6
Nitab4.5_0000512g0010 Nicotiana tabacum HOM05D003674 ORTHO05D004226 3.3e-27 127.9 127 51.2
MSTRG.14335 Avicennia marina HOM05D003674 ORTHO05D004226 4.4e-27 127.5 121 50.4
SEGI_23599 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 6.3e-26 123.6 83 67.5
MSTRG.14340 Avicennia marina HOM05D003674 ORTHO05D004226 1.1e-25 122.9 105 58.1
Peaxi162Scf00132g00118 Petunia axillaris HOM05D003674 ORTHO05D004226 1.8e-25 122.1 105 56.2
arahy.Tifrunner.gnm1.ann1.Y3H9JV Arachis hypogaea HOM05D003674 ORTHO05D004226 1.7e-23 115.5 107 44.9
Oeu010989.1 Olea europaea HOM05D003674 ORTHO05D004226 4.2e-22 110.9 156 44.2
Nitab4.5_0012835g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.4e-20 105.9 147 40.1
MSTRG.14337 Avicennia marina HOM05D003674 ORTHO05D004226 2.8e-18 98.2 102 53.9
Oeu030714.1 Olea europaea HOM05D003674 ORTHO05D004226 1.2e-16 92.8 115 50.4
SHI10406 Sapria himalayana HOM05D003674 ORTHO05D004226 1.2e-16 92.8 80 60.0
Nitab4.5_0000638g0280 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.6e-16 92.4 144 40.3
SHI10401 Sapria himalayana HOM05D003674 ORTHO05D004226 4.5e-16 90.9 113 45.1
CBR_g41145 Chara braunii HOM05D003674 ORTHO05D004226 1.7e-15 89.0 160 32.5
Haze_13163 Corylus avellana HOM05D003674 ORTHO05D004226 1.7e-15 89.0 107 44.9
SEGI_04644 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 3.0e-12 78.2 71 53.5
arahy.Tifrunner.gnm1.ann1.WCYV83 Arachis hypogaea HOM05D003674 ORTHO05D004226 5.7e-11 73.9 64 46.9
Hma1.2p1_1145F.1_g261420 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.2e-10 72.0 62 56.5
MSTRG.14333 Avicennia marina HOM05D003674 ORTHO05D004226 1.5e-06 59.3 69 44.9
Cre12.g532350 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 2.5e-06 58.5 279 24.7
SEGI_38669 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 5.6e-06 57.4 60 53.3


User provided reference genes

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