Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_5780 Physcomitrium patens HOM05D000082 ORTHO05D310223 1.0e-206 723.4 437 100.0
BcaNung05757 Brassica carinata HOM05D000082 ORTHO05D007743 4.8e-10 70.1 104 36.5
A03p10340 Brassica napus HOM05D000278 ORTHO05D004673 4.8e-10 70.1 110 35.5
C03p11870 Brassica napus HOM05D000278 ORTHO05D004673 4.8e-10 70.1 104 36.5
MD15G1046800 Malus domestica HOM05D000082 ORTHO05D007743 6.3e-10 69.7 106 34.0
arahy.Tifrunner.gnm1.ann1.9Z4RH8 Arachis hypogaea HOM05D000082 ORTHO05D007743 1.4e-09 68.6 102 34.3
arahy.Tifrunner.gnm1.ann1.GHB8SH Arachis hypogaea HOM05D000082 ORTHO05D007743 1.4e-09 68.6 102 34.3
Thhalv10014170m.g Eutrema salsugineum HOM05D000082 ORTHO05D007743 1.8e-09 68.2 104 36.5
MD08G1045000 Malus domestica HOM05D000082 ORTHO05D007743 3.1e-09 67.4 91 36.3
Sp6g23610 Schrenkiella parvula HOM05D000082 ORTHO05D007743 3.1e-09 67.4 104 36.5
CARHR191940 Cardamine hirsuta HOM05D000082 ORTHO05D007743 4.1e-09 67.0 104 35.6
Carub.0006s1920 Capsella rubella HOM05D000082 ORTHO05D007743 5.3e-09 66.6 102 36.3
ClCG05G015970 Citrullus lanatus HOM05D000082 ORTHO05D007743 5.3e-09 66.6 102 34.3
Gohir.A06G081400 Gossypium hirsutum HOM05D000082 ORTHO05D007743 5.3e-09 66.6 106 32.1
AT5G20910 Arabidopsis thaliana HOM05D000082 ORTHO05D007743 6.9e-09 66.2 104 34.6
Lalb_Chr24g0393731 Lupinus albus HOM05D000082 ORTHO05D007743 6.9e-09 66.2 99 33.3
Prupe.1G401200 Prunus persica HOM05D006336 ORTHO05D007819 6.9e-09 66.2 106 34.0
TWI63G0835 Tripterygium wilfordii HOM05D000082 ORTHO05D007743 6.9e-09 66.2 102 37.3
Ca_13085_v3 Cicer arietinum L. HOM05D000082 ORTHO05D007743 9.1e-09 65.9 102 33.3
Duzib150G1135 Durio zibethinus HOM05D000082 ORTHO05D007743 9.1e-09 65.9 110 31.8
VMungo0647G2039 Vigna mungo HOM05D000082 ORTHO05D007743 9.1e-09 65.9 99 34.3
Hma1.2p1_0920F.1_g236580 Hydrangea macrophylla HOM05D000082 ORTHO05D007743 1.2e-08 65.5 104 33.7
CANSAT25G3535 Cannabis sativa HOM05D000082 ORTHO05D007743 1.5e-08 65.1 102 31.4
Psat6g024320 Pisum sativum HOM05D000082 ORTHO05D007743 1.5e-08 65.1 99 33.3
Aa31LG1G13850 Aethionema arabicum HOM05D000082 ORTHO05D007743 2.0e-08 64.7 104 34.6
COL.COLO4_21172 Corchorus olitorius HOM05D000082 ORTHO05D007743 2.0e-08 64.7 104 32.7
Thecc.09G066800 Theobroma cacao HOM05D000082 ORTHO05D007743 2.0e-08 64.7 112 29.5
TAR624G0119 Trochodendron aralioides HOM05D000082 ORTHO05D007743 2.0e-08 64.7 102 36.3
AL6G32470 Arabidopsis lyrata HOM05D000082 ORTHO05D007743 2.6e-08 64.3 104 34.6
THA.LOC104810973 Tarenaya hassleriana HOM05D000082 ORTHO05D007743 3.4e-08 63.9 104 34.6
AagrBONN_evm.TU.Sc2ySwM_344.4009 Anthoceros agrestis HOM05D000082 ORTHO05D007743 4.5e-08 63.5 97 37.1
Gohir.D06G081000 Gossypium hirsutum HOM05D000082 ORTHO05D007743 4.5e-08 63.5 106 31.1
Gorai.010G094400 Gossypium raimondii HOM05D000082 ORTHO05D007743 4.5e-08 63.5 106 31.1
Nn8g38527 Nelumbo nucifera HOM05D000082 ORTHO05D007743 4.5e-08 63.5 104 34.6
Pp3c1_42450 Physcomitrium patens HOM05D000082 ORTHO05D007743 4.5e-08 63.5 102 35.3
MELO3C016933.2 Cucumis melo HOM05D000082 ORTHO05D007743 5.9e-08 63.2 100 33.0
Lj5g0022807 Lotus japonicus HOM05D000082 ORTHO05D007743 7.7e-08 62.8 99 33.3
Atru.chr7.1811 Acer truncatum HOM05D000082 ORTHO05D007743 1.0e-07 62.4 102 30.4
Lsat_1_v5_gn_7_59260 Lactuca sativa HOM05D000082 ORTHO05D007743 1.0e-07 62.4 105 32.4
AagrBONN_evm.TU.Sc2ySwM_344.4006 Anthoceros agrestis HOM05D000082 ORTHO05D007743 1.3e-07 62.0 97 37.1
MSTRG.1634 Avicennia marina HOM05D000082 ORTHO05D007743 1.3e-07 62.0 104 30.8
MBI13_g01682_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D007743 1.3e-07 62.0 108 29.6
FAN07G0416 Fragaria x ananassa HOM05D000116 ORTHO05D007743 1.7e-07 61.6 86 38.4
Manes.16G088000 Manihot esculenta HOM05D000082 ORTHO05D007743 2.2e-07 61.2 102 33.3
Potri.006G217600 Populus trichocarpa HOM05D000082 ORTHO05D007743 2.2e-07 61.2 100 35.0
unitig_0.g2182 Utricularia gibba HOM05D000082 ORTHO05D007743 2.2e-07 61.2 104 32.7
Glyma.14G105900 Glycine max HOM05D000082 ORTHO05D007743 2.9e-07 60.8 99 31.3
Rhsim12G0139000 Rhododendron simsii HOM05D000082 ORTHO05D007743 2.9e-07 60.8 104 33.7
FAN06G0753 Fragaria x ananassa HOM05D000082 ORTHO05D007743 3.8e-07 60.5 80 37.5
Phvul.001G043900 Phaseolus vulgaris HOM05D000082 ORTHO05D007743 3.8e-07 60.5 99 31.3
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 3.8e-07 60.5 104 29.8
FvH4_2g37060 Fragaria vesca HOM05D000082 ORTHO05D007743 5.0e-07 60.1 80 38.8
FAN06G3381 Fragaria x ananassa HOM05D000082 ORTHO05D007743 5.0e-07 60.1 80 38.8
FAN10G1603 Fragaria x ananassa HOM05D000287 ORTHO05D007743 5.0e-07 60.1 80 38.8
FAN21G1538 Fragaria x ananassa HOM05D000082 ORTHO05D007743 5.0e-07 60.1 80 38.8
FAN25G1293 Fragaria x ananassa HOM05D000082 ORTHO05D007743 5.0e-07 60.1 80 38.8
Sabra06G0167800 Salix brachista HOM05D000082 ORTHO05D007743 5.0e-07 60.1 100 35.0
TPR.G38904 Trifolium pratense HOM05D000082 ORTHO05D007743 5.0e-07 60.1 99 33.3
Aqoxy7G00970 Aquilegia oxysepala HOM05D000082 ORTHO05D007743 8.5e-07 59.3 103 34.0
PSO724G0255 Papaver somniferum HOM05D000082 ORTHO05D007743 8.5e-07 59.3 104 34.6
PGR044G1353 Punica granatum HOM05D000082 ORTHO05D007743 1.1e-06 58.9 102 30.4
RcHm_v2.0_Chr6g0304721 Rosa chinensis HOM05D000082 ORTHO05D007743 1.1e-06 58.9 80 35.0
Aqoxy7G04170 Aquilegia oxysepala HOM05D000082 ORTHO05D007743 1.9e-06 58.2 94 33.0
FAN21G0679 Fragaria x ananassa HOM05D000082 ORTHO05D007743 1.9e-06 58.2 80 38.8
PSO135G0672 Papaver somniferum HOM05D000082 ORTHO05D007743 1.9e-06 58.2 104 34.6
CSS0031449 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D007743 3.2e-06 57.4 102 34.3
Glyma.17G220500 Glycine max HOM05D000082 ORTHO05D007743 3.2e-06 57.4 99 30.3
HanXRQChr09g0248291 Helianthus annuus HOM05D000082 ORTHO05D007743 3.2e-06 57.4 104 30.8
vmacro16415 Vaccinium macrocarpon HOM05D000082 ORTHO05D007743 5.5e-06 56.6 93 34.4
Dinv40948 Davidia involucrata HOM05D000082 ORTHO05D007743 7.2e-06 56.2 92 33.7


User provided reference genes

Program Settings