Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 1.2e-286 989.2 494 100.0
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 2.8e-208 728.8 489 74.0
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 9.4e-204 713.8 485 71.3
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.2e-203 713.4 485 71.8
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 1.5e-201 706.4 493 70.2
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 2.6e-201 705.7 495 69.7
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 3.3e-201 705.3 484 71.3
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 7.4e-201 704.1 490 70.0
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 9.7e-201 703.7 491 70.3
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 1.7e-200 703.0 486 69.8
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.7e-200 701.8 488 70.7
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 3.7e-200 701.8 492 70.7
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 4.8e-200 701.4 490 69.6
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 4.1e-199 698.4 486 70.2
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 4.1e-199 698.4 491 69.2
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 5.3e-199 698.0 484 69.8
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 5.3e-199 698.0 493 69.2
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.2e-198 696.8 492 69.3
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 2.6e-198 695.7 484 70.9
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.6e-198 695.7 490 69.4
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 3.4e-198 695.3 484 68.6
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 3.4e-198 695.3 488 70.7
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 5.9e-198 694.5 499 69.1
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 5.9e-198 694.5 487 69.2
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.3e-197 693.3 484 70.0
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.7e-197 693.0 488 70.5
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 2.2e-197 692.6 481 70.3
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 2.2e-197 692.6 487 70.4
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 2.9e-197 692.2 488 69.3
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 2.9e-197 692.2 487 69.4
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 3.8e-197 691.8 486 70.0
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 3.8e-197 691.8 488 70.3
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 3.8e-197 691.8 488 71.1
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 3.8e-197 691.8 487 70.2
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 5.0e-197 691.4 522 66.9
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 5.0e-197 691.4 482 71.8
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 6.5e-197 691.0 499 68.1
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 8.5e-197 690.6 489 69.3
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.1e-196 690.3 489 69.3
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.1e-196 690.3 488 70.3
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.4e-196 689.9 487 69.6
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.9e-196 689.5 486 68.3
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.9e-196 689.5 495 68.9
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.9e-196 689.5 491 70.3
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.9e-196 689.5 488 69.9
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.9e-196 689.5 487 69.0
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.2e-196 688.7 487 70.0
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.2e-196 688.3 487 70.0
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 5.5e-196 688.0 488 68.4
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 5.5e-196 688.0 487 69.2
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 7.2e-196 687.6 490 68.0
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 9.4e-196 687.2 487 69.0
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 1.2e-195 686.8 486 68.7
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.2e-195 686.8 485 70.1
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.6e-195 686.4 487 68.0
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 7.9e-195 684.1 488 69.5
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 7.9e-195 684.1 489 68.5
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 7.9e-195 684.1 487 68.6
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.4e-194 683.3 488 69.5
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.8e-194 682.9 483 68.7
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.8e-194 682.9 488 68.4
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 1.8e-194 682.9 484 69.8
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.8e-194 682.9 487 69.4
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 2.3e-194 682.6 487 68.4
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 2.3e-194 682.6 489 68.9
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 2.3e-194 682.6 485 67.4
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 2.3e-194 682.6 489 68.5
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 8.8e-194 680.6 489 68.9
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 8.8e-194 680.6 488 69.5
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 8.8e-194 680.6 487 68.6
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 8.8e-194 680.6 486 68.3
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 1.5e-193 679.9 488 68.6
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.5e-193 679.9 487 69.0
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.0e-193 679.5 487 69.6
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.6e-193 679.1 488 69.1
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 5.7e-193 677.9 487 68.6
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 5.7e-193 677.9 488 68.4
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 7.4e-193 677.6 488 68.0
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 7.4e-193 677.6 488 69.1
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 9.7e-193 677.2 492 67.9
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 9.7e-193 677.2 480 69.6
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 3.7e-192 675.2 498 67.1
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 6.3e-192 674.5 490 67.3
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 8.2e-192 674.1 490 67.6
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.1e-191 673.7 491 67.6
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.8e-191 672.9 502 66.9
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 2.4e-191 672.5 470 69.8
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 3.1e-191 672.2 499 66.7
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 3.1e-191 672.2 491 67.8
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 4.1e-191 671.8 472 70.1
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.3e-191 671.4 485 68.9
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 7.0e-191 671.0 489 67.1
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 7.0e-191 671.0 491 67.8
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 9.1e-191 670.6 499 66.7
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 9.1e-191 670.6 489 67.1
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.2e-190 670.2 488 67.6
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 2.0e-190 669.5 489 66.7
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 2.6e-190 669.1 489 67.3
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 2.6e-190 669.1 525 63.8
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.9e-190 667.9 490 67.3
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 7.7e-190 667.5 486 68.5
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.0e-189 667.2 491 67.0
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 6.5e-189 664.5 480 67.1
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 3.2e-188 662.1 482 66.8
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 2.1e-187 659.4 487 66.7
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 8.0e-187 657.5 480 66.7
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 3.0e-186 655.6 435 72.2
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 8.2e-184 647.5 516 64.1
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 5.2e-178 628.2 438 68.9
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 9.8e-177 624.0 440 70.7
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.1e-175 620.5 438 71.0
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 5.9e-174 614.8 442 69.7
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.2e-172 609.0 439 69.9
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 4.0e-170 602.1 435 68.7
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 6.8e-170 601.3 513 59.5
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 1.1e-164 583.9 382 73.6
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.2e-154 548.5 488 60.2
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 5.2e-154 548.5 401 66.8
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.6e-150 537.0 471 60.3
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 2.6e-145 519.6 532 50.2
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 6.4e-144 515.0 485 54.8
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.2e-142 510.8 380 66.6
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.3e-136 490.7 384 66.1
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 8.4e-136 488.0 384 65.1
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 2.3e-133 479.9 496 53.0
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.3e-128 464.2 384 62.0
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 7.8e-126 454.9 473 54.5
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 7.3e-124 448.4 345 67.0
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 9.3e-119 431.4 606 43.1
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.9e-118 428.3 267 77.5
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.3e-107 394.4 242 78.1
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 1.7e-104 384.0 239 76.6
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 3.8e-104 382.9 435 51.5
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 2.7e-102 376.7 243 72.8
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.1e-90 338.2 301 60.1
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 2.3e-85 320.5 313 57.2
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 2.2e-83 313.9 253 61.7
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.8e-83 312.8 219 72.1
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.0e-80 305.1 295 56.3
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.7e-75 287.7 236 62.3
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.2e-68 265.0 234 57.7
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.3e-68 263.5 311 49.5
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 7.7e-65 252.3 247 55.9
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.9e-42 177.9 259 42.1
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 2.3e-40 171.0 101 78.2
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 8.6e-40 169.1 96 79.2
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 5.8e-36 156.4 97 74.2
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.3e-35 155.2 163 50.3
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 6.4e-35 152.9 151 56.3
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 5.1e-32 143.3 145 51.7
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 8.6e-32 142.5 298 34.6
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.9e-31 141.4 142 50.0
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.7e-27 127.1 75 76.0
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 1.2e-25 122.1 101 57.4
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.0e-24 119.0 121 52.1
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 1.6e-22 111.7 79 68.4
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 2.0e-20 104.8 85 62.4
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 5.6e-15 86.7 93 48.4
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 2.1e-14 84.7 156 39.1
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 7.6e-12 76.3 61 67.2
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.3e-08 65.5 51 64.7
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 3.0e-08 64.3 35 77.1
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 7.3e-07 59.7 74 45.9
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 1.6e-06 58.5 47 59.6
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 2.1e-06 58.2 30 83.3


User provided reference genes

Program Settings