Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_40310 Physcomitrium patens HOM05D001289 ORTHO05D036843 6.1e-34 146.7 66 100.0
Pp3c2_2120 Physcomitrium patens HOM05D001289 ORTHO05D006592 1.8e-22 108.6 66 71.2
Pp3c17_20310 Physcomitrium patens HOM05D001289 ORTHO05D006592 4.5e-21 104.0 64 68.8
Pp3c14_16940 Physcomitrium patens HOM05D001289 ORTHO05D006592 1.0e-20 102.8 64 67.2
SMO119G0510 Selaginella moellendorffii HOM05D001289 ORTHO05D006592 1.0e-17 92.8 66 62.1
AagrBONN_evm.TU.Sc2ySwM_344.2801 Anthoceros agrestis HOM05D001289 ORTHO05D006592 1.5e-16 89.0 56 66.1
Mapoly0031s0108 Marchantia polymorpha HOM05D001289 ORTHO05D006592 4.4e-16 87.4 56 66.1
Sc09g0005860 Simmondsia chinensis HOM05D001289 ORTHO05D006592 5.7e-16 87.0 64 59.4
Solyc03g071590.3 Solanum lycopersicum HOM05D001289 ORTHO05D006592 2.8e-15 84.7 66 62.1
Sopen03g019880 Solanum pennellii HOM05D001289 ORTHO05D006592 2.8e-15 84.7 66 62.1
HanXRQChr12g0367851 Helianthus annuus HOM05D001289 ORTHO05D006592 3.7e-15 84.3 66 60.6
HanXRQChr12g0368891 Helianthus annuus HOM05D001289 ORTHO05D006592 3.7e-15 84.3 66 60.6
Nitab4.5_0001461g0060 Nicotiana tabacum HOM05D001289 ORTHO05D006592 4.9e-15 84.0 66 60.6
Solyc11g007990.2 Solanum lycopersicum HOM05D001289 ORTHO05D006592 4.9e-15 84.0 66 60.6
Sopen11g003850 Solanum pennellii HOM05D001289 ORTHO05D006592 4.9e-15 84.0 66 60.6
PGSC0003DMG400031063 Solanum tuberosum HOM05D001289 ORTHO05D006592 4.9e-15 84.0 66 60.6
SEGI_04139 Sequoiadendron giganteum HOM05D001289 ORTHO05D036843 6.3e-15 83.6 66 59.1
SalBow6G5416 Salvia bowleyana HOM05D001289 ORTHO05D006592 8.3e-15 83.2 66 59.1
Nitab4.5_0000107g0180 Nicotiana tabacum HOM05D001289 ORTHO05D006592 1.1e-14 82.8 66 59.1
CAN.G459.16 Capsicum annuum HOM05D001289 ORTHO05D006592 1.4e-14 82.4 66 60.6
Lsat_1_v5_gn_8_17481 Lactuca sativa HOM05D001289 ORTHO05D006592 1.4e-14 82.4 56 64.3
Nitab4.5_0002717g0040 Nicotiana tabacum HOM05D001289 ORTHO05D006592 1.4e-14 82.4 66 60.6
EL10As9g23933 Beta vulgaris HOM05D001289 ORTHO05D006592 1.8e-14 82.0 66 56.1
Hund06761 Selenicereus undatus HOM05D001289 ORTHO05D006592 1.8e-14 82.0 66 56.1
Os08g0562100 Oryza sativa ssp. japonica HOM05D001289 ORTHO05D006592 2.4e-14 81.6 66 57.6
PSO063G4655 Papaver somniferum HOM05D001289 ORTHO05D006592 2.4e-14 81.6 66 60.6
PSO339G2067 Papaver somniferum HOM05D001289 ORTHO05D006592 2.4e-14 81.6 66 60.6
ECA233G0334 Erigeron canadensis HOM05D001289 ORTHO05D006592 3.1e-14 81.3 56 62.5
Lj5g0000122 Lotus japonicus HOM05D001289 ORTHO05D006592 3.1e-14 81.3 66 54.5
Peaxi162Scf01105g00217 Petunia axillaris HOM05D001289 ORTHO05D006592 3.1e-14 81.3 66 59.1
Lj2A23T73 Lonicera japonica HOM05D001289 ORTHO05D006592 4.1e-14 80.9 56 60.7
Migut.F01686 Erythranthe guttata HOM05D001289 ORTHO05D006592 7.0e-14 80.1 66 57.6
HanXRQChr08g0218231 Helianthus annuus HOM05D001289 ORTHO05D006592 7.0e-14 80.1 56 60.7
MD07G1073300 Malus domestica HOM05D001289 ORTHO05D006592 7.0e-14 80.1 56 60.7
unitig_26.g9462 Utricularia gibba HOM05D001289 ORTHO05D006592 7.0e-14 80.1 56 60.7
Ah.04g163570 Amaranthus hybridus HOM05D001289 ORTHO05D006592 9.2e-14 79.7 66 54.5
AUR62041526 Chenopodium quinoa HOM05D001289 ORTHO05D006592 9.2e-14 79.7 66 54.5
Gohir.D04G006100 Gossypium hirsutum HOM05D001289 ORTHO05D006592 9.2e-14 79.7 56 62.5
Gorai.012G007300 Gossypium raimondii HOM05D001289 ORTHO05D006592 9.2e-14 79.7 56 62.5
MSTRG.9133 Avicennia marina HOM05D001289 ORTHO05D006592 1.2e-13 79.3 66 54.5
VMungo0720G0921 Vigna mungo HOM05D001289 ORTHO05D006592 1.2e-13 79.3 66 56.1
AUR62041538 Chenopodium quinoa HOM05D001289 ORTHO05D006592 1.6e-13 79.0 64 54.7
BcaC04g19877 Brassica carinata HOM05D001289 ORTHO05D006592 2.7e-13 78.2 53 64.2
Cc02_g10620 Coffea canephora HOM05D001289 ORTHO05D006592 2.7e-13 78.2 56 57.1
Rhsim03G0111900 Rhododendron simsii HOM05D001289 ORTHO05D006592 2.7e-13 78.2 56 60.7
SGA_v2.0_scaffold41G15740 Striga asiatica HOM05D001289 ORTHO05D006592 2.7e-13 78.2 56 58.9
ATR0043G006 Amborella trichopoda HOM05D001289 ORTHO05D006592 3.5e-13 77.8 56 58.9
BcaC03g14105 Brassica carinata HOM05D001289 ORTHO05D006592 3.5e-13 77.8 53 66.0
C02p13440 Brassica napus HOM05D001289 ORTHO05D006592 3.5e-13 77.8 53 66.0
BolC2t07456H Brassica oleracea HOM05D001289 ORTHO05D006592 3.5e-13 77.8 53 66.0
MD02G1243100 Malus domestica HOM05D001289 ORTHO05D006592 3.5e-13 77.8 56 58.9
HPP92_025781 Vanilla planifolia HOM05D001289 ORTHO05D006592 3.5e-13 77.8 56 60.7
Actinidia18552 Actinidia chinensis HOM05D001289 ORTHO05D006592 4.5e-13 77.4 66 56.1
BcaB01g04530 Brassica carinata HOM05D001289 ORTHO05D006592 4.5e-13 77.4 53 64.2
A02p07800 Brassica napus HOM05D001289 ORTHO05D006592 4.5e-13 77.4 53 66.0
BraA02t05853Z Brassica rapa HOM05D001289 ORTHO05D006592 4.5e-13 77.4 53 66.0
BcaB01g01470 Brassica carinata HOM05D001289 ORTHO05D006592 5.9e-13 77.0 53 64.2
C03p14440 Brassica napus HOM05D001289 ORTHO05D006592 5.9e-13 77.0 53 64.2
Gohir.A05G409300 Gossypium hirsutum HOM05D001289 ORTHO05D006592 5.9e-13 77.0 56 60.7
Prupe.2G091600 Prunus persica HOM05D001289 ORTHO05D006592 5.9e-13 77.0 56 57.1
A03p12300 Brassica napus HOM05D001289 ORTHO05D006592 7.8e-13 76.6 53 64.2
BolC3t13886H Brassica oleracea HOM05D001289 ORTHO05D006592 7.8e-13 76.6 53 64.2
BraA03t10541Z Brassica rapa HOM05D001289 ORTHO05D006592 7.8e-13 76.6 53 64.2
ClCG05G021390 Citrullus lanatus HOM05D001289 ORTHO05D006592 7.8e-13 76.6 56 58.9
Hma1.2p1_2971F.1_g331080 Hydrangea macrophylla HOM05D001289 ORTHO05D006592 7.8e-13 76.6 56 58.9
Nn6g35211 Nelumbo nucifera HOM05D001289 ORTHO05D006592 7.8e-13 76.6 66 54.5
Sed0013606 Sechium edule HOM05D001289 ORTHO05D006592 7.8e-13 76.6 56 58.9
Aqoxy1G01089 Aquilegia oxysepala HOM05D001289 ORTHO05D006592 1.0e-12 76.3 56 58.9
CARHR272140 Cardamine hirsuta HOM05D001289 ORTHO05D006592 1.0e-12 76.3 53 62.3
DCAR_006393 Daucus carota HOM05D001289 ORTHO05D006592 1.0e-12 76.3 46 73.9
Oeu035817.4 Olea europaea HOM05D001289 ORTHO05D006592 1.0e-12 76.3 66 54.5
Sp6g19990 Schrenkiella parvula HOM05D001289 ORTHO05D006592 1.0e-12 76.3 53 64.2
TWI38G1270 Tripterygium wilfordii HOM05D001289 ORTHO05D006592 1.0e-12 76.3 56 58.9
Glyma.10G197700 Glycine max HOM05D001289 ORTHO05D006592 1.3e-12 75.9 66 54.5
AT5G58330 Arabidopsis thaliana HOM05D001289 ORTHO05D006592 1.7e-12 75.5 53 62.3
A10p15920 Brassica napus HOM05D001289 ORTHO05D006592 1.7e-12 75.5 53 62.3
C09p50210 Brassica napus HOM05D001289 ORTHO05D006592 1.7e-12 75.5 53 62.3
BolC9t57877H Brassica oleracea HOM05D001289 ORTHO05D006592 1.7e-12 75.5 53 62.3
BraA10t43632Z Brassica rapa HOM05D001289 ORTHO05D006592 1.7e-12 75.5 53 62.3
CSS0028096 Camellia sinensis var. sinensis HOM05D001289 ORTHO05D006592 1.7e-12 75.5 56 57.1
Ciclev10031559m.g Citrus clementina HOM05D001289 ORTHO05D006592 1.7e-12 75.5 56 58.9
CsaV3_5G035850 Cucumis sativus L. HOM05D001289 ORTHO05D006592 1.7e-12 75.5 66 54.5
Glyma.20G192200 Glycine max HOM05D001289 ORTHO05D006592 1.7e-12 75.5 66 54.5
Lalb_Chr02g0151061 Lupinus albus HOM05D001289 ORTHO05D006592 1.7e-12 75.5 55 60.0
Manes.07G133100 Manihot esculenta HOM05D001289 ORTHO05D006592 1.7e-12 75.5 66 53.0
Nn3g19101 Nelumbo nucifera HOM05D001289 ORTHO05D006592 1.7e-12 75.5 56 55.4
Nn8g40529 Nelumbo nucifera HOM05D001289 ORTHO05D036843 1.7e-12 75.5 56 55.4
Phvul.007G140600 Phaseolus vulgaris HOM05D001289 ORTHO05D006592 1.7e-12 75.5 66 54.5
TAR369G1116 Trochodendron aralioides HOM05D001289 ORTHO05D006592 1.7e-12 75.5 56 55.4
AL8G34430 Arabidopsis lyrata HOM05D001289 ORTHO05D006592 2.3e-12 75.1 53 62.3
BcaB08g36170 Brassica carinata HOM05D001289 ORTHO05D006592 2.3e-12 75.1 53 62.3
Carub.0008s1887 Capsella rubella HOM05D001289 ORTHO05D006592 2.3e-12 75.1 53 62.3
Cpa.g.sc706.3 Carica papaya HOM05D001289 ORTHO05D006592 2.3e-12 75.1 56 55.4
MELO3C012389.2 Cucumis melo HOM05D001289 ORTHO05D006592 2.3e-12 75.1 66 54.5
Lalb_Chr06g0169961 Lupinus albus HOM05D001289 ORTHO05D006592 2.9e-12 74.7 55 58.2
Medtr1g090730 Medicago truncatula HOM05D001289 ORTHO05D006592 2.9e-12 74.7 66 53.0
TPR.G37770 Trifolium pratense HOM05D001289 ORTHO05D006592 2.9e-12 74.7 66 53.0
Atru.chr12.894 Acer truncatum HOM05D001289 ORTHO05D006592 3.9e-12 74.3 56 57.1
CANSAT56G0361 Cannabis sativa HOM05D001289 ORTHO05D006592 3.9e-12 74.3 56 58.9
Ca_10450_v3 Cicer arietinum L. HOM05D001289 ORTHO05D006592 3.9e-12 74.3 66 53.0
Potri.008G031700 Populus trichocarpa HOM05D001289 ORTHO05D006592 3.9e-12 74.3 56 57.1
vmacro07197 Vaccinium macrocarpon HOM05D001289 ORTHO05D006592 3.9e-12 74.3 56 55.4
CSS0050119 Camellia sinensis var. sinensis HOM05D001289 ORTHO05D006592 5.0e-12 73.9 56 57.1
Cfa001780 Carpinus fangiana HOM05D001289 ORTHO05D006592 5.0e-12 73.9 56 57.1
Cfa001781 Carpinus fangiana HOM05D001289 ORTHO05D006592 5.0e-12 73.9 56 57.1
CiPaw.01G265800 Carya illinoinensis HOM05D001289 ORTHO05D006592 5.0e-12 73.9 56 57.1
FAN01G0893 Fragaria x ananassa HOM05D001289 ORTHO05D006592 5.0e-12 73.9 56 57.1
FAN03G3480 Fragaria x ananassa HOM05D001289 ORTHO05D006592 5.0e-12 73.9 56 57.1
FAN06G2033 Fragaria x ananassa HOM05D001289 ORTHO05D006592 5.0e-12 73.9 56 57.1
FAN10G1604 Fragaria x ananassa HOM05D001289 ORTHO05D006592 5.0e-12 73.9 56 57.1
Sabra08G0020700 Salix brachista HOM05D001289 ORTHO05D006592 5.0e-12 73.9 56 57.1
Thecc.10G088900 Theobroma cacao HOM05D001289 ORTHO05D006592 6.6e-12 73.6 56 55.4
Aa31LG11G100 Aethionema arabicum HOM05D001289 ORTHO05D006592 8.6e-12 73.2 53 60.4
CDE06G0229 Ceratophyllum demersum HOM05D001289 ORTHO05D006592 8.6e-12 73.2 56 55.4
Sed0004705 Sechium edule HOM05D001289 ORTHO05D006592 8.6e-12 73.2 56 55.4
BcaB05g22421 Brassica carinata HOM05D001289 ORTHO05D006592 1.1e-11 72.8 53 62.3
FvH4_7g06530 Fragaria vesca HOM05D001289 ORTHO05D006592 1.1e-11 72.8 56 55.4
Manes.10G052600 Manihot esculenta HOM05D001289 ORTHO05D006592 1.1e-11 72.8 56 55.4
PGR044G1963 Punica granatum HOM05D001289 ORTHO05D006592 1.1e-11 72.8 56 55.4
RcHm_v2.0_Chr1g0334961 Rosa chinensis HOM05D001289 ORTHO05D006592 1.1e-11 72.8 56 55.4
Eucgr.J01037 Eucalyptus grandis HOM05D001289 ORTHO05D006592 1.5e-11 72.4 56 53.6
THA.LOC104824214 Tarenaya hassleriana HOM05D001289 ORTHO05D006592 1.5e-11 72.4 53 60.4
GSVIVG01016172001 Vitis vinifera HOM05D001289 ORTHO05D006592 1.5e-11 72.4 56 55.4
QL08p053170 Quercus lobata HOM05D001289 ORTHO05D006592 1.9e-11 72.0 56 55.4
Dinv36366 Davidia involucrata HOM05D001289 ORTHO05D006592 2.5e-11 71.6 56 53.6
Duzib114G0776 Durio zibethinus HOM05D001289 ORTHO05D006592 2.5e-11 71.6 56 55.4
CiPaw.02G170300 Carya illinoinensis HOM05D001289 ORTHO05D006592 3.3e-11 71.2 56 55.4
MCO16G043 Micromonas commoda HOM05D001289 ORTHO05D006592 9.5e-11 69.7 52 57.7
arahy.Tifrunner.gnm1.ann1.A3GNNU Arachis hypogaea HOM05D001289 ORTHO05D006592 4.7e-10 67.4 68 51.5
arahy.Tifrunner.gnm1.ann1.JN2MSV Arachis hypogaea HOM05D001289 ORTHO05D006592 4.7e-10 67.4 68 51.5
HanXRQChr12g0368681 Helianthus annuus HOM05D001289 ORTHO05D006592 5.8e-08 60.5 66 50.0
COL.COLO4_32898 Corchorus olitorius HOM05D001289 ORTHO05D006592 1.3e-07 59.3 42 64.3
Cre09.g410700 Chlamydomonas reinhardtii HOM05D001289 ORTHO05D006592 8.3e-07 56.6 51 49.0


User provided reference genes

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