Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 1.4e-147 526.9 437 100.0
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 3.4e-96 356.3 444 73.9
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 2.2e-95 353.6 449 74.8
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 9.1e-94 348.2 189 86.8
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 2.7e-93 346.7 222 77.9
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 1.7e-92 344.0 226 75.7
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 2.3e-92 343.6 222 78.4
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 2.3e-92 343.6 222 78.4
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 3.8e-92 342.8 222 77.0
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 3.8e-92 342.8 222 77.0
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 5.0e-92 342.4 222 75.7
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 5.0e-92 342.4 223 75.3
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 5.0e-92 342.4 222 77.9
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 6.6e-92 342.0 223 74.4
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 8.6e-92 341.7 225 77.3
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 8.6e-92 341.7 222 76.6
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 1.1e-91 341.3 223 75.8
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 1.5e-91 340.9 223 74.0
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 1.9e-91 340.5 223 73.5
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 2.5e-91 340.1 223 73.5
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 5.5e-91 339.0 222 76.1
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 7.2e-91 338.6 235 70.6
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 7.2e-91 338.6 235 70.6
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 7.2e-91 338.6 235 70.6
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 1.2e-90 337.8 222 74.3
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 1.2e-90 337.8 226 73.9
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 1.2e-90 337.8 226 73.9
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 1.6e-90 337.4 222 74.8
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 2.8e-90 336.7 226 74.3
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 2.8e-90 336.7 189 82.0
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 2.8e-90 336.7 189 82.0
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 3.6e-90 336.3 225 76.4
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 4.7e-90 335.9 222 74.8
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 4.7e-90 335.9 223 74.9
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 6.1e-90 335.5 219 76.3
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 6.1e-90 335.5 222 75.2
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 8.0e-90 335.1 222 75.2
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 1.0e-89 334.7 219 73.5
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 1.8e-89 334.0 222 71.6
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 6.8e-89 332.0 222 74.8
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 6.8e-89 332.0 224 71.9
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 8.9e-89 331.6 222 74.3
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 8.9e-89 331.6 219 73.1
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 8.9e-89 331.6 223 74.4
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 8.9e-89 331.6 188 83.0
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 1.2e-88 331.3 219 74.4
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 1.2e-88 331.3 189 81.5
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 1.5e-88 330.9 189 81.0
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 2.0e-88 330.5 189 81.5
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.0e-88 330.5 219 72.1
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.0e-88 330.5 224 71.4
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 2.6e-88 330.1 225 73.3
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 2.6e-88 330.1 223 75.3
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.6e-88 330.1 222 69.8
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 3.4e-88 329.7 223 72.6
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 4.4e-88 329.3 222 74.3
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 4.4e-88 329.3 222 74.3
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 4.4e-88 329.3 222 70.7
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 4.4e-88 329.3 226 74.8
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 4.4e-88 329.3 219 71.7
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 5.7e-88 328.9 221 75.1
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 7.5e-88 328.6 225 74.2
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 7.5e-88 328.6 222 73.4
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 7.5e-88 328.6 227 72.7
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 9.8e-88 328.2 189 79.4
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 9.8e-88 328.2 222 72.1
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 9.8e-88 328.2 189 79.9
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.3e-87 327.8 189 79.9
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 1.3e-87 327.8 189 79.9
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 1.7e-87 327.4 222 71.2
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 1.7e-87 327.4 226 73.5
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 2.2e-87 327.0 221 74.7
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 2.2e-87 327.0 189 81.0
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 3.7e-87 326.2 222 71.6
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 6.3e-87 325.5 223 73.5
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 6.3e-87 325.5 222 75.2
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 1.4e-86 324.3 222 74.8
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 3.2e-86 323.2 188 78.2
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 3.2e-86 323.2 189 77.8
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 4.1e-86 322.8 233 69.1
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 5.4e-86 322.4 222 73.9
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 5.4e-86 322.4 227 71.8
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 5.4e-86 322.4 227 74.9
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 5.4e-86 322.4 240 67.1
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 7.0e-86 322.0 189 79.4
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 7.8e-85 318.5 223 72.2
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 1.0e-84 318.2 219 73.5
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 1.0e-84 318.2 219 73.5
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 1.0e-84 318.2 219 73.5
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 1.3e-84 317.8 189 77.2
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 2.3e-84 317.0 216 74.1
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 5.0e-84 315.8 189 76.7
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 5.0e-84 315.8 189 76.7
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 5.0e-84 315.8 235 68.1
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 5.0e-84 315.8 189 76.7
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 1.1e-83 314.7 189 76.2
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 1.9e-83 313.9 189 76.2
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 8.0e-82 308.5 274 62.4
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 1.8e-81 307.4 271 62.0
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 6.8e-81 305.4 189 74.1
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 2.0e-80 303.9 189 73.5
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.0e-80 303.9 189 75.7
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 4.4e-80 302.8 212 68.4
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 8.3e-79 298.5 196 71.4
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 5.4e-78 295.8 253 61.7
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.2e-77 294.7 167 80.8
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.2e-77 294.7 167 81.4
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 2.0e-77 293.9 189 72.5
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 1.0e-76 291.6 210 66.2
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 3.9e-76 289.7 266 57.9
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 5.0e-76 289.3 218 64.2
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 8.1e-74 282.0 200 70.0
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 1.3e-71 274.6 189 65.6
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 2.9e-71 273.5 222 67.6
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 4.9e-71 272.7 240 60.4
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 9.2e-70 268.5 189 72.5
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 9.2e-70 268.5 184 69.0
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 3.5e-61 240.0 235 57.4
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 1.8e-57 227.6 185 57.3
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 2.4e-54 217.2 247 47.8
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 4.6e-53 213.0 184 55.4
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 9.3e-46 188.7 94 93.6
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 1.7e-44 184.5 97 86.6
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 4.8e-42 176.4 171 54.4
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 6.7e-36 156.0 135 63.0
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 1.6e-34 151.4 125 60.0
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 1.0e-28 132.1 70 85.7
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 1.0e-28 132.1 70 85.7
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 8.7e-28 129.0 105 61.9
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 3.3e-19 100.5 97 63.9
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 1.4e-12 78.6 53 60.4
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 1.8e-09 68.2 50 60.0
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 4.5e-08 63.5 149 28.2
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 7.7e-08 62.8 68 50.0
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 7.7e-08 62.8 149 27.5


User provided reference genes

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