Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.1e-257 892.9 475 100.0
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.1e-124 451.1 327 71.9
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 6.5e-69 265.8 297 50.8
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.4e-68 264.6 277 54.9
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 1.9e-68 264.2 279 54.1
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 7.2e-68 262.3 312 47.1
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 1.6e-67 261.2 266 51.9
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.4e-66 258.1 316 49.1
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.8e-66 257.7 331 44.7
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.8e-66 257.7 298 50.7
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 2.3e-66 257.3 297 48.1
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 3.0e-66 256.9 275 52.7
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 3.0e-66 256.9 305 48.5
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 5.1e-66 256.1 267 51.7
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 5.1e-66 256.1 286 50.3
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 6.7e-66 255.8 266 53.8
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 3.3e-65 253.4 285 50.2
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 3.3e-65 253.4 267 53.2
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 4.4e-65 253.1 270 50.7
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 5.7e-65 252.7 283 49.5
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 7.4e-65 252.3 274 51.1
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 7.4e-65 252.3 276 49.6
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 7.4e-65 252.3 307 48.5
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 7.4e-65 252.3 306 48.7
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 7.4e-65 252.3 289 48.4
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 9.7e-65 251.9 271 52.8
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.7e-64 251.1 313 46.6
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 2.2e-64 250.8 308 46.4
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 3.7e-64 250.0 234 53.4
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 3.7e-64 250.0 306 46.4
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 4.8e-64 249.6 310 47.4
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 4.8e-64 249.6 271 52.4
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.1e-63 248.4 266 50.0
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 1.1e-63 248.4 308 47.1
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 1.4e-63 248.1 266 49.6
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 1.4e-63 248.1 288 49.0
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.4e-63 248.1 300 49.0
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.4e-63 248.1 323 45.2
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 1.8e-63 247.7 266 49.6
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 2.4e-63 247.3 292 50.7
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 3.1e-63 246.9 266 50.0
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 5.3e-63 246.1 273 51.3
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 5.9e-62 242.7 302 45.4
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.3e-61 241.5 291 48.8
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.7e-61 241.1 275 48.7
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 1.7e-61 241.1 269 50.2
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 2.2e-61 240.7 328 46.6
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 3.8e-61 240.0 304 47.0
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 5.0e-61 239.6 289 48.1
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 6.5e-61 239.2 269 50.9
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 6.5e-61 239.2 270 49.6
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 6.5e-61 239.2 315 45.4
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 8.5e-61 238.8 294 46.9
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 8.5e-61 238.8 295 45.8
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.1e-60 238.4 267 50.2
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 3.2e-60 236.9 306 46.4
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 3.2e-60 236.9 336 42.9
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 4.2e-60 236.5 284 48.6
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 7.2e-60 235.7 309 46.6
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 9.4e-60 235.3 298 48.0
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.2e-59 235.0 209 56.0
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 1.6e-59 234.6 264 48.5
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.1e-59 234.2 317 46.4
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 3.6e-59 233.4 292 44.5
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 3.6e-59 233.4 220 52.7
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 3.6e-59 233.4 209 55.5
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 4.7e-59 233.0 275 50.9
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 4.7e-59 233.0 226 53.5
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 6.1e-59 232.6 237 51.1
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 6.1e-59 232.6 237 51.1
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 8.0e-59 232.3 325 44.9
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.4e-58 231.5 247 51.0
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.8e-58 231.1 234 51.3
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.8e-58 231.1 319 45.5
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.8e-58 231.1 335 45.1
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 3.0e-58 230.3 278 50.0
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 5.2e-58 229.6 201 56.2
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 5.2e-58 229.6 330 44.8
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 8.8e-58 228.8 215 54.9
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 1.1e-57 228.4 286 47.9
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 1.1e-57 228.4 196 56.6
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.5e-57 228.0 330 44.5
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 4.4e-57 226.5 222 52.3
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 5.7e-57 226.1 215 52.6
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 9.7e-57 225.3 261 51.3
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 2.8e-56 223.8 328 45.4
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 4.8e-56 223.0 314 45.2
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 8.2e-56 222.2 211 51.2
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 3.1e-55 220.3 326 45.4
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 4.1e-55 219.9 282 48.6
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 4.1e-55 219.9 248 48.0
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 4.1e-55 219.9 221 49.3
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 5.3e-55 219.5 292 47.3
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 5.3e-55 219.5 282 48.6
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 5.3e-55 219.5 282 48.6
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 5.3e-55 219.5 292 47.3
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 9.1e-55 218.8 297 47.5
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.2e-54 218.4 332 44.0
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.6e-54 218.0 193 54.9
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.6e-54 218.0 193 57.0
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 4.5e-54 216.5 281 47.7
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 7.7e-54 215.7 187 56.7
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 7.7e-54 215.7 307 44.6
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.7e-53 214.5 317 43.8
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 2.9e-53 213.8 266 46.6
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 8.5e-53 212.2 186 56.5
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 1.1e-52 211.8 239 46.4
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 4.2e-52 209.9 347 40.1
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 5.5e-52 209.5 304 44.7
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 5.5e-52 209.5 322 43.2
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 1.6e-51 208.0 244 48.0
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.5e-49 201.4 287 44.6
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 2.0e-49 201.1 233 46.8
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 1.1e-47 195.3 266 45.9
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 2.0e-46 191.0 245 49.4
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 7.7e-46 189.1 169 53.8
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 7.0e-39 166.0 129 58.9
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.2e-38 165.2 352 35.2
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 9.5e-36 155.6 179 44.1
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 2.8e-35 154.1 139 56.8
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 3.0e-34 150.6 121 59.5
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-28 131.7 241 33.6
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 9.5e-28 129.0 262 36.3
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 3.6e-27 127.1 95 64.2
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 3.6e-27 127.1 97 62.9
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 3.3e-20 104.0 294 32.0
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 9.8e-17 92.4 107 43.0
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.2e-16 91.3 242 31.0
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.1e-15 89.0 233 29.2
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.1e-15 89.0 70 60.0
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 1.9e-15 88.2 210 31.4
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 4.1e-15 87.0 148 38.5
Pp3c1_33100 Physcomitrium patens HOM05D001261 ORTHO05D001130 1.0e-13 82.4 200 38.0
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 3.1e-10 70.9 97 34.0
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 2.6e-09 67.8 151 37.7
MCO12G371 Micromonas commoda HOM05D005493 ORTHO05D049008 2.4e-07 61.2 155 28.4
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.2e-06 58.9 138 31.9


User provided reference genes

Program Settings