Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 0.0e+00 1433.3 735 100.0
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 0.0e+00 1254.6 735 86.5
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 0.0e+00 1225.7 735 84.5
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.0e-274 949.1 743 66.1
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.7e-273 946.0 741 66.1
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.3e-232 807.4 636 64.5
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 4.1e-187 659.1 739 48.8
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.4e-163 580.1 592 51.9
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 2.0e-154 550.4 697 44.8
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.1e-99 368.6 680 34.0
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.6e-96 356.3 689 31.9
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.6e-96 356.3 689 31.9
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 1.4e-91 341.7 731 32.8
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.2e-90 338.6 669 32.6
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 6.7e-89 332.8 682 32.4
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 3.3e-88 330.5 678 32.6
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 5.7e-88 329.7 679 31.8
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 9.7e-88 328.9 646 33.0
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 2.8e-87 327.4 701 31.8
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 4.8e-87 326.6 673 31.5
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 4.1e-86 323.6 653 31.9
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 6.9e-86 322.8 653 33.4
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 6.9e-86 322.8 651 32.1
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.2e-85 322.0 676 31.8
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.0e-85 321.2 676 30.9
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 2.0e-85 321.2 652 32.5
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 1.3e-84 318.5 652 31.9
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.7e-84 318.2 651 32.7
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 3.8e-84 317.0 653 31.1
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 3.8e-84 317.0 677 31.8
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 6.5e-84 316.2 651 31.5
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 1.4e-83 315.1 700 31.1
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 3.2e-83 313.9 676 31.2
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 3.2e-83 313.9 653 31.9
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 4.2e-83 313.5 674 32.9
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 7.2e-83 312.8 652 30.8
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 7.2e-83 312.8 727 30.8
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 1.2e-82 312.0 676 31.5
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 1.2e-82 312.0 697 31.9
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 2.7e-82 310.8 656 32.2
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 6.1e-82 309.7 653 31.4
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 7.9e-82 309.3 692 30.9
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 3.0e-81 307.4 656 32.5
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 3.9e-81 307.0 670 31.8
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 3.9e-81 307.0 654 31.8
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 5.1e-81 306.6 699 30.8
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 5.1e-81 306.6 687 30.9
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 5.1e-81 306.6 679 30.9
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 5.1e-81 306.6 655 30.5
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 8.8e-81 305.8 681 31.4
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 8.8e-81 305.8 677 32.5
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 8.8e-81 305.8 678 30.8
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 1.1e-80 305.4 654 31.0
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 1.5e-80 305.1 678 31.4
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 1.5e-80 305.1 693 31.6
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 2.5e-80 304.3 678 31.4
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 2.5e-80 304.3 680 31.2
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 3.3e-80 303.9 678 31.0
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 3.3e-80 303.9 683 31.2
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 4.3e-80 303.5 686 30.0
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 4.3e-80 303.5 676 31.5
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 5.7e-80 303.1 682 30.2
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 7.4e-80 302.8 674 31.0
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 1.7e-79 301.6 677 30.9
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 2.2e-79 301.2 681 31.4
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 2.2e-79 301.2 681 31.3
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 2.2e-79 301.2 665 31.6
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 2.8e-79 300.8 681 31.4
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 2.8e-79 300.8 678 31.1
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 2.8e-79 300.8 705 30.1
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 3.7e-79 300.4 684 30.3
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 4.8e-79 300.1 654 30.6
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 1.4e-78 298.5 678 31.1
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.4e-78 298.5 691 30.5
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 2.4e-78 297.7 618 33.7
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 3.1e-78 297.4 684 30.8
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 4.1e-78 297.0 668 30.5
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 5.3e-78 296.6 678 31.0
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 1.2e-77 295.4 688 30.7
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 2.6e-77 294.3 648 31.0
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 2.6e-77 294.3 672 30.1
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 3.4e-77 293.9 681 31.0
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 4.5e-77 293.5 681 31.0
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 4.5e-77 293.5 644 30.4
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 4.5e-77 293.5 660 31.4
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 7.7e-77 292.7 671 30.6
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 1.3e-76 292.0 680 30.9
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 1.3e-76 292.0 670 29.7
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 2.5e-75 287.7 666 30.8
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 5.5e-75 286.6 627 31.7
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 5.5e-75 286.6 706 29.3
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 4.7e-74 283.5 668 30.5
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 4.7e-74 283.5 676 31.1
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 6.1e-74 283.1 712 29.5
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 7.9e-74 282.7 671 30.4
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.1e-72 278.9 651 30.4
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 3.3e-72 277.3 674 31.2
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 4.4e-72 276.9 676 30.2
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.2e-71 274.6 681 30.2
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.8e-71 274.2 653 30.3
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 3.7e-71 273.9 581 32.2
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 8.2e-71 272.7 522 33.5
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.4e-70 271.2 648 29.0
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 2.0e-69 268.1 571 32.2
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 1.0e-68 265.8 578 31.1
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 1.7e-68 265.0 697 29.8
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 2.2e-68 264.6 677 29.2
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 3.8e-68 263.8 650 28.5
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 8.5e-68 262.7 703 30.4
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 1.1e-67 262.3 629 30.4
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.1e-64 252.3 599 30.9
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 2.6e-64 251.1 555 31.2
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 3.3e-64 250.8 491 34.4
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 9.7e-64 249.2 623 29.2
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 1.2e-61 242.3 574 29.3
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 3.5e-61 240.7 783 26.4
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 8.5e-60 236.1 657 28.8
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 4.2e-59 233.8 670 27.3
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 4.2e-59 233.8 500 32.8
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 5.2e-57 226.9 652 27.5
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 8.8e-57 226.1 524 31.5
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 2.0e-56 224.9 518 30.1
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.2e-55 221.5 497 30.6
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 3.1e-54 217.6 659 26.6
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 3.6e-50 204.1 509 28.1
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 3.6e-50 204.1 489 30.9
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 4.7e-50 203.8 418 33.5
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 8.8e-49 199.5 668 26.2
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 2.4e-46 191.4 341 34.6
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 5.4e-46 190.3 568 28.0
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 2.7e-45 188.0 516 28.7
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 3.3e-43 181.0 404 31.4
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 2.7e-37 161.4 291 34.7
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 1.9e-35 155.2 656 24.1
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 7.3e-35 153.3 334 32.3
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 4.0e-33 147.5 210 38.6
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 3.7e-31 141.0 305 32.1
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 3.2e-30 137.9 401 27.7
Gohir.D02G179566 Gossypium hirsutum HOM05D003674 ORTHO05D004226 5.4e-30 137.1 260 33.8
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 3.5e-29 134.4 307 29.6
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 4.6e-29 134.0 448 25.9
Nn1g06549 Nelumbo nucifera HOM05D003674 ORTHO05D004226 1.1e-22 112.8 151 40.4
ATR0737G184 Amborella trichopoda HOM05D003674 ORTHO05D004226 2.4e-22 111.7 142 43.7
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 6.0e-21 107.1 284 27.8
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 5.1e-20 104.0 232 31.0
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 6.6e-20 103.6 249 28.9
CiPaw.04G126200 Carya illinoinensis HOM05D003674 ORTHO05D004226 6.2e-18 97.1 168 35.1
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 6.8e-17 93.6 143 36.4
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 2.2e-15 88.6 189 30.7
CBR_g41145 Chara braunii HOM05D003674 ORTHO05D004226 4.9e-15 87.4 159 27.0
CDE08G1051 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 1.4e-14 85.9 141 32.6
Hma1.2p1_1836F.1_g304720 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 7.1e-14 83.6 120 38.3
Nn1g06550 Nelumbo nucifera HOM05D003674 ORTHO05D004226 3.9e-12 77.8 155 32.9
MSTRG.14339 Avicennia marina HOM05D003674 ORTHO05D004226 2.1e-10 72.0 123 35.0
Ca_01497_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 2.1e-10 72.0 146 35.6
SEGI_23599 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 2.1e-10 72.0 81 44.4
MSTRG.14337 Avicennia marina HOM05D003674 ORTHO05D004226 8.1e-10 70.1 91 41.8
MCO14G402 Micromonas commoda HOM05D009333 ORTHO05D011489 2.0e-08 65.5 253 23.3
Oeu010988.1 Olea europaea HOM05D003674 ORTHO05D004226 3.4e-08 64.7 125 34.4
PRCOL_00003146 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 2.9e-07 61.6 168 28.0
vmacro12304 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 6.4e-07 60.5 169 26.0
MSTRG.14335 Avicennia marina HOM05D003674 ORTHO05D004226 1.4e-06 59.3 126 28.6
SEGI_19203 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 1.4e-06 59.3 100 36.0
Cre12.g532350 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 2.4e-06 58.5 276 25.0
Nitab4.5_0012835g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.4e-06 58.5 131 29.8
MCO04G064 Micromonas commoda HOM05D009333 ORTHO05D011489 4.2e-06 57.8 246 25.6
MSTRG.14340 Avicennia marina HOM05D003674 ORTHO05D004226 7.1e-06 57.0 93 34.4


User provided reference genes

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