Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 7.3e-105 384.0 212 100.0
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 2.6e-62 242.7 217 65.9
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.2e-45 186.4 120 73.3
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 2.9e-45 186.0 119 73.9
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 2.5e-44 183.0 109 78.0
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 3.2e-44 182.6 109 78.0
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 4.2e-44 182.2 109 78.9
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 4.2e-44 182.2 109 78.0
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 5.5e-44 181.8 109 78.9
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 7.2e-44 181.4 202 49.5
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 7.2e-44 181.4 123 69.9
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 9.4e-44 181.0 109 78.0
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 9.4e-44 181.0 109 78.0
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 9.4e-44 181.0 136 65.4
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 9.4e-44 181.0 136 65.4
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 1.6e-43 180.3 109 78.0
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 2.1e-43 179.9 109 77.1
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.7e-43 179.5 201 48.8
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 4.7e-43 178.7 109 77.1
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 6.1e-43 178.3 109 77.1
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 6.1e-43 178.3 109 77.1
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 6.1e-43 178.3 109 77.1
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 7.9e-43 177.9 121 72.7
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 1.0e-42 177.6 109 76.1
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 1.4e-42 177.2 109 76.1
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 1.4e-42 177.2 109 75.2
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 2.3e-42 176.4 109 75.2
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 2.3e-42 176.4 184 52.2
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 3.0e-42 176.0 133 65.4
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.0e-42 176.0 133 65.4
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 3.0e-42 176.0 109 76.1
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 3.0e-42 176.0 108 76.9
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 3.9e-42 175.6 109 75.2
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 6.7e-42 174.9 122 70.5
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 6.7e-42 174.9 133 65.4
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 6.7e-42 174.9 133 65.4
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 6.7e-42 174.9 109 75.2
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 6.7e-42 174.9 109 73.4
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 8.8e-42 174.5 133 63.2
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 8.8e-42 174.5 133 63.2
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 8.8e-42 174.5 114 70.2
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 8.8e-42 174.5 115 72.2
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 8.8e-42 174.5 119 70.6
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 8.8e-42 174.5 109 75.2
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 1.1e-41 174.1 131 65.6
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 1.1e-41 174.1 145 64.1
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 1.1e-41 174.1 145 64.1
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.1e-41 174.1 108 75.9
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 1.5e-41 173.7 109 74.3
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 2.0e-41 173.3 129 65.1
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 2.0e-41 173.3 130 64.6
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 2.6e-41 172.9 109 76.1
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 2.6e-41 172.9 109 75.2
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 2.6e-41 172.9 122 68.9
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 3.3e-41 172.6 109 74.3
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 3.3e-41 172.6 165 59.4
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 5.7e-41 171.8 112 72.3
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 5.7e-41 171.8 164 55.5
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 5.7e-41 171.8 120 68.3
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 7.4e-41 171.4 118 69.5
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 9.7e-41 171.0 132 62.1
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 1.3e-40 170.6 109 75.2
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 1.3e-40 170.6 109 75.2
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 1.3e-40 170.6 109 75.2
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.7e-40 170.2 109 72.5
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.7e-40 170.2 109 73.4
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 1.7e-40 170.2 109 73.4
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.7e-40 170.2 109 75.2
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 2.2e-40 169.9 109 75.2
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 2.2e-40 169.9 109 73.4
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 2.8e-40 169.5 109 71.6
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 2.8e-40 169.5 175 52.6
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 3.7e-40 169.1 109 71.6
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 3.7e-40 169.1 164 54.3
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 4.8e-40 168.7 124 65.3
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 4.8e-40 168.7 109 72.5
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 8.2e-40 167.9 127 63.0
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 8.2e-40 167.9 109 72.5
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 1.1e-39 167.5 108 71.3
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 1.1e-39 167.5 108 71.3
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 1.1e-39 167.5 108 71.3
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 1.1e-39 167.5 108 71.3
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 1.1e-39 167.5 108 71.3
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 1.1e-39 167.5 109 70.6
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.4e-39 167.2 168 53.0
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 1.8e-39 166.8 112 69.6
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 1.8e-39 166.8 175 52.6
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 2.4e-39 166.4 109 70.6
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 3.1e-39 166.0 108 71.3
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 3.1e-39 166.0 103 74.8
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 3.1e-39 166.0 109 72.5
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 4.1e-39 165.6 128 64.8
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 9.1e-39 164.5 148 55.4
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 1.6e-38 163.7 107 70.1
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.6e-38 163.7 126 63.5
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 1.6e-38 163.7 137 59.9
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 1.6e-38 163.7 137 58.4
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 2.0e-38 163.3 108 70.4
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 2.0e-38 163.3 108 70.4
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 2.0e-38 163.3 108 70.4
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 4.5e-38 162.2 145 59.3
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 4.5e-38 162.2 108 69.4
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 5.9e-38 161.8 107 70.1
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 7.7e-38 161.4 106 70.8
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 1.7e-37 160.2 123 65.0
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 2.2e-37 159.8 108 70.4
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 3.8e-37 159.1 176 50.0
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 5.0e-37 158.7 185 49.2
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 4.2e-36 155.6 127 61.4
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 2.7e-35 152.9 94 73.4
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 6.1e-35 151.8 108 66.7
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 8.0e-35 151.4 109 67.0
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 1.4e-34 150.6 97 69.1
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 3.3e-33 146.0 90 72.2
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 7.5e-33 144.8 90 72.2
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 2.4e-31 139.8 124 52.4
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 1.2e-30 137.5 114 59.6
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 2.9e-29 132.9 78 76.9
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 2.9e-29 132.9 131 48.9
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 8.5e-29 131.3 80 72.5
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 4.2e-28 129.0 78 73.1
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 1.4e-26 124.0 108 52.8
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 5.2e-26 122.1 76 69.7
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 3.1e-23 112.8 157 43.3
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.5e-17 94.0 58 69.0
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 8.3e-16 88.2 74 52.7
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.8e-07 60.5 75 38.7


User provided reference genes

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