Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 6.5e-285 983.4 503 100.0
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.4e-207 725.7 528 70.6
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 1.3e-165 587.0 513 60.2
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 6.3e-163 578.2 509 58.0
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.0e-161 573.2 506 59.3
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.3e-159 564.3 496 59.5
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 2.7e-158 562.8 488 58.6
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 4.6e-158 562.0 514 56.8
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.8e-157 560.1 488 58.6
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 3.9e-157 558.9 491 58.7
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 6.7e-157 558.1 484 60.5
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 8.7e-157 557.8 483 59.6
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.1e-156 557.4 505 57.8
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 2.8e-155 552.7 491 58.5
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 2.6e-153 546.2 489 57.7
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.7e-152 543.5 491 58.5
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.9e-152 542.7 506 56.1
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 1.1e-151 540.8 476 58.0
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 1.9e-151 540.0 503 56.3
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.9e-151 540.0 508 57.7
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 3.2e-151 539.3 488 58.2
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 4.2e-151 538.9 506 57.1
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.6e-150 537.0 489 57.5
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.4e-149 533.9 488 57.0
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.8e-149 533.5 502 55.4
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 3.0e-149 532.7 504 55.4
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 5.1e-149 531.9 498 57.0
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 5.1e-149 531.9 505 56.0
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 5.1e-149 531.9 498 56.4
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 5.1e-149 531.9 505 56.0
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 6.7e-149 531.6 492 56.3
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 8.8e-149 531.2 488 56.1
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.1e-148 530.8 505 55.6
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 1.5e-148 530.4 515 54.2
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.5e-148 530.4 498 56.8
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.6e-148 529.6 498 56.8
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 3.3e-148 529.3 488 56.6
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 4.4e-148 528.9 498 55.8
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 5.7e-148 528.5 503 55.5
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 7.4e-148 528.1 495 55.8
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.4e-148 528.1 498 56.6
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.7e-147 526.9 489 56.4
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.7e-147 526.9 489 57.5
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.7e-147 526.9 505 54.7
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 2.8e-147 526.2 490 55.9
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 2.8e-147 526.2 506 54.9
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 3.7e-147 525.8 488 56.4
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.2e-147 524.6 497 56.7
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 8.2e-147 524.6 504 55.2
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.1e-146 524.2 509 55.6
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.8e-146 523.5 491 56.6
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 1.8e-146 523.5 506 56.1
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 2.4e-146 523.1 509 54.8
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 3.1e-146 522.7 489 55.2
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 6.9e-146 521.5 488 57.6
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 6.9e-146 521.5 491 55.8
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 9.1e-146 521.2 513 55.0
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.0e-145 520.0 513 54.8
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 2.6e-145 519.6 521 54.3
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 4.5e-145 518.8 491 55.8
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 7.7e-145 518.1 491 55.6
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.3e-144 517.3 488 55.3
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.7e-144 516.9 513 54.8
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 2.2e-144 516.5 488 56.8
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 5.0e-144 515.4 504 55.0
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.4e-143 513.8 503 54.7
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.9e-143 513.5 505 53.5
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 3.2e-143 512.7 491 56.0
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 3.2e-143 512.7 488 57.0
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 7.2e-143 511.5 487 56.9
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 9.4e-143 511.1 504 54.4
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 9.4e-143 511.1 488 55.1
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 2.1e-142 510.0 489 55.4
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 5.2e-141 505.4 491 55.6
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 4.4e-140 502.3 518 52.1
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 4.8e-139 498.8 488 53.1
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.1e-138 497.7 488 53.3
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.4e-138 497.3 433 59.4
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 3.1e-138 496.1 576 49.1
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 5.3e-138 495.4 488 52.9
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 7.0e-138 495.0 489 53.4
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.2e-137 494.2 488 52.7
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.6e-137 493.0 488 53.1
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.6e-137 493.0 488 53.1
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 3.5e-137 492.7 504 52.2
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 8.5e-136 488.0 486 52.3
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.1e-135 487.6 518 51.7
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 2.5e-135 486.5 491 54.0
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 4.7e-134 482.3 510 51.0
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.7e-134 482.3 498 54.0
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.4e-133 480.7 446 57.4
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 5.7e-132 475.3 446 57.4
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 2.4e-130 469.9 488 51.4
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.5e-129 465.7 502 52.4
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 5.9e-129 465.3 511 51.5
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 2.9e-128 463.0 446 54.9
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 8.5e-128 461.5 446 54.7
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.9e-127 460.3 500 50.6
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.6e-126 457.2 442 55.7
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.4e-125 454.1 487 50.7
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 4.0e-125 452.6 515 48.7
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.0e-124 450.3 506 50.6
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.8e-123 446.4 499 50.5
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 3.1e-122 443.0 542 47.6
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.4e-122 442.2 489 48.7
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 5.7e-116 422.2 515 48.3
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.7e-115 420.6 437 52.6
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 2.2e-115 420.2 441 50.3
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.8e-115 419.9 516 46.9
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.4e-114 417.5 467 52.0
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 1.3e-112 411.0 385 56.6
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 6.6e-112 408.7 503 45.5
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.6e-110 402.9 369 57.2
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 5.2e-109 399.1 385 55.3
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 6.8e-109 398.7 456 49.8
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.9e-107 393.3 400 53.8
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 3.9e-104 382.9 309 62.1
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 4.3e-103 379.4 524 44.5
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 3.6e-102 376.3 369 53.9
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 1.5e-100 370.9 372 55.1
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 6.4e-99 365.5 432 47.7
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 6.4e-91 339.0 262 64.1
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 1.9e-87 327.4 373 51.2
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 3.3e-87 326.6 352 51.7
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 3.3e-79 300.1 356 50.3
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.8e-75 286.6 486 38.3
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 7.8e-73 278.9 204 67.2
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.4e-66 258.1 333 44.7
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.3e-63 246.5 336 44.0
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 1.1e-61 241.9 397 36.8
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 8.4e-59 232.3 305 43.9
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.1e-56 223.0 295 43.4
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.8e-48 198.0 185 53.0
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.5e-47 194.9 217 48.4
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 2.2e-46 191.0 328 39.0
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.2e-41 175.3 97 80.4
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.6e-41 173.7 97 79.4
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 2.5e-39 167.5 217 48.4
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 4.3e-39 166.8 97 78.4
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 3.7e-38 163.7 96 76.0
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.1e-34 152.1 116 62.1
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 4.7e-33 146.7 197 43.7
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 7.4e-31 139.4 137 53.3
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.7e-28 129.4 97 61.9
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.9e-24 117.1 349 27.5
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 3.3e-23 114.0 68 75.0
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 7.7e-12 76.3 68 51.5
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 7.7e-12 76.3 60 63.3
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 5.0e-11 73.6 129 40.3
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 1.6e-09 68.6 38 78.9
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 6.1e-09 66.6 42 71.4
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 2.0e-07 61.6 71 49.3
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.0e-07 61.6 88 40.9
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 3.4e-07 60.8 33 78.8


User provided reference genes

Program Settings