Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 2.5e-164 582.0 294 100.0
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 4.3e-79 298.9 340 54.7
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 1.3e-56 224.2 158 69.0
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 8.7e-56 221.5 166 64.5
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 8.7e-56 221.5 166 64.5
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 2.5e-55 219.9 165 64.2
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 4.3e-55 219.2 165 64.8
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 5.6e-55 218.8 165 63.6
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 7.4e-55 218.4 166 63.9
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 9.6e-55 218.0 159 65.4
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 9.6e-55 218.0 165 64.2
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 1.3e-54 217.6 165 64.2
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 1.6e-54 217.2 165 63.6
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 3.6e-54 216.1 165 63.6
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 4.8e-54 215.7 165 63.0
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 8.1e-54 214.9 160 65.0
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 8.1e-54 214.9 159 65.4
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 1.1e-53 214.5 159 65.4
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.1e-53 214.5 159 65.4
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.1e-53 214.5 159 65.4
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.1e-53 214.5 159 65.4
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 1.1e-53 214.5 165 63.6
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 1.4e-53 214.2 165 63.6
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 1.8e-53 213.8 165 62.4
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 3.1e-53 213.0 165 63.0
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 3.1e-53 213.0 165 64.2
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 5.3e-53 212.2 165 61.8
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 6.9e-53 211.8 159 62.9
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 6.9e-53 211.8 156 64.1
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 9.0e-53 211.5 156 64.1
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 9.0e-53 211.5 165 62.4
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 1.2e-52 211.1 160 63.1
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 1.2e-52 211.1 165 63.0
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 2.0e-52 210.3 165 63.6
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 2.0e-52 210.3 156 63.5
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 2.0e-52 210.3 165 61.8
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 2.6e-52 209.9 213 51.6
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 2.6e-52 209.9 165 61.8
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 2.6e-52 209.9 156 64.1
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 3.4e-52 209.5 165 61.8
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 3.4e-52 209.5 165 61.8
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 3.4e-52 209.5 165 61.8
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 4.5e-52 209.1 162 63.0
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 4.5e-52 209.1 159 63.5
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 4.5e-52 209.1 165 61.2
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 5.8e-52 208.8 165 61.8
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 7.6e-52 208.4 162 61.7
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 7.6e-52 208.4 165 61.2
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 7.6e-52 208.4 160 61.9
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 9.9e-52 208.0 165 61.2
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 9.9e-52 208.0 165 61.2
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 9.9e-52 208.0 166 60.8
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 9.9e-52 208.0 165 60.0
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 9.9e-52 208.0 159 62.3
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 1.3e-51 207.6 162 62.3
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 1.3e-51 207.6 165 61.2
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 1.3e-51 207.6 165 61.8
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.7e-51 207.2 165 61.8
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 2.9e-51 206.5 162 62.3
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 2.9e-51 206.5 162 62.3
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 2.9e-51 206.5 162 62.3
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 2.9e-51 206.5 165 60.6
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 2.9e-51 206.5 165 60.6
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 2.9e-51 206.5 162 62.3
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 3.8e-51 206.1 165 61.2
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 3.8e-51 206.1 165 61.2
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 4.9e-51 205.7 162 61.7
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 4.9e-51 205.7 165 60.0
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 6.4e-51 205.3 162 61.7
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 6.4e-51 205.3 162 62.3
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 6.4e-51 205.3 165 60.0
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 8.4e-51 204.9 160 62.5
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 8.4e-51 204.9 162 61.7
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 8.4e-51 204.9 162 61.7
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 8.4e-51 204.9 162 61.7
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 8.4e-51 204.9 162 61.7
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 1.1e-50 204.5 177 59.3
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.4e-50 204.1 156 65.4
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 1.4e-50 204.1 162 60.5
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.4e-50 204.1 159 62.9
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 1.4e-50 204.1 163 60.7
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.9e-50 203.8 162 61.7
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.9e-50 203.8 162 61.7
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 2.4e-50 203.4 162 60.5
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 4.2e-50 202.6 162 61.1
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 4.2e-50 202.6 162 61.1
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 4.2e-50 202.6 159 62.3
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 5.5e-50 202.2 162 61.1
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 7.1e-50 201.8 165 60.0
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 7.1e-50 201.8 159 62.3
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 9.3e-50 201.4 165 60.0
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 1.2e-49 201.1 165 60.0
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 1.2e-49 201.1 165 59.4
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 1.2e-49 201.1 165 59.4
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 2.7e-49 199.9 156 63.5
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 3.5e-49 199.5 165 59.4
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 3.5e-49 199.5 165 58.8
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 4.6e-49 199.1 165 57.6
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 6.0e-49 198.7 159 61.0
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 1.8e-48 197.2 156 62.2
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 2.3e-48 196.8 172 57.6
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 6.7e-48 195.3 177 56.5
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 6.7e-48 195.3 174 55.2
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 8.7e-48 194.9 164 60.4
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 1.1e-47 194.5 162 59.9
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 1.1e-47 194.5 154 61.7
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 3.3e-47 193.0 162 59.3
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 7.4e-47 191.8 187 51.9
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 3.7e-46 189.5 168 58.9
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 3.7e-46 189.5 193 51.8
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 3.1e-45 186.4 139 64.0
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.9e-42 177.2 165 54.5
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 1.9e-42 177.2 138 62.3
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 6.0e-41 172.2 163 52.8
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 6.0e-41 172.2 165 53.3
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 3.3e-39 166.4 149 51.7
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 5.3e-37 159.1 152 50.7
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 4.3e-31 139.4 162 47.5
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 2.6e-28 130.2 135 51.9
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 2.9e-27 126.7 140 46.4
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 7.4e-23 112.1 150 45.3
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 1.9e-18 97.4 76 63.2
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 4.2e-18 96.3 77 61.0
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 3.1e-13 80.1 66 60.6


User provided reference genes

Program Settings