Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.3e-307 1058.1 562 100.0
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.2e-300 1035.8 560 98.6
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 7.3e-229 797.3 558 76.0
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 9.0e-227 790.4 566 74.9
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.4e-83 314.7 631 42.0
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 2.5e-59 234.2 580 33.4
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.5e-56 224.9 579 32.5
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.0e-56 224.6 567 33.3
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.2e-53 215.3 598 32.9
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.5e-51 208.4 565 33.6
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 2.5e-51 207.6 566 32.9
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 3.2e-51 207.2 526 32.9
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.0e-49 202.2 529 32.3
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.4e-49 201.8 517 33.7
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.5e-48 198.4 561 31.2
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 7.5e-48 196.1 536 34.3
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.3e-47 195.3 570 33.9
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.3e-47 195.3 538 34.2
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-47 194.9 532 35.0
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-47 194.9 529 35.0
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.7e-47 194.9 537 32.0
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.8e-47 193.4 564 36.0
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.1e-46 192.2 529 34.8
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.8e-46 191.4 504 35.9
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.4e-46 191.0 530 32.1
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.1e-46 190.7 587 32.9
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 7.0e-46 189.5 509 33.0
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 9.1e-46 189.1 520 32.5
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 1.2e-45 188.7 583 30.9
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.2e-45 188.7 552 33.2
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 2.0e-45 188.0 522 32.4
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 3.5e-45 187.2 577 34.7
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 4.5e-45 186.8 506 33.6
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 1.0e-44 185.7 575 32.5
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.3e-44 185.3 513 32.0
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.3e-44 185.3 510 34.9
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.7e-44 184.9 360 36.1
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 1.7e-44 184.9 549 32.2
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.2e-44 184.5 591 31.5
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 2.9e-44 184.1 549 32.4
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 3.8e-44 183.7 505 30.5
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 5.0e-44 183.3 547 32.7
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 6.5e-44 183.0 503 32.6
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 6.5e-44 183.0 507 32.1
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 8.5e-44 182.6 570 30.7
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 8.5e-44 182.6 549 34.8
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.9e-43 181.4 560 34.3
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.9e-43 181.4 548 31.6
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.9e-43 181.4 579 33.3
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.5e-43 181.0 529 32.5
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.5e-43 181.0 523 35.6
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 3.2e-43 180.6 544 33.3
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 3.2e-43 180.6 576 32.8
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 4.2e-43 180.3 498 34.5
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 4.2e-43 180.3 372 37.1
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.5e-43 179.9 544 31.6
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.5e-43 179.9 521 35.1
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 7.2e-43 179.5 502 32.5
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 7.2e-43 179.5 549 31.1
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.2e-42 178.7 548 31.4
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 2.1e-42 177.9 533 31.9
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.7e-42 177.6 538 29.9
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 2.7e-42 177.6 497 34.4
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.7e-42 176.8 531 32.2
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 6.1e-42 176.4 551 33.2
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 2.3e-41 174.5 505 33.3
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.3e-41 174.5 539 31.4
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.0e-41 174.1 531 31.3
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.0e-41 174.1 536 29.5
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 4.0e-41 173.7 545 31.0
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 4.0e-41 173.7 564 32.6
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 6.8e-41 172.9 597 32.5
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 6.8e-41 172.9 572 31.3
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 8.8e-41 172.6 565 31.2
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.8e-41 172.6 508 32.9
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.2e-40 172.2 544 34.0
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.5e-40 171.8 552 32.6
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.5e-40 171.8 586 29.4
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.5e-40 171.8 572 31.5
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.0e-40 171.4 552 32.4
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.6e-40 171.0 574 32.2
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 2.6e-40 171.0 553 32.0
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 2.6e-40 171.0 590 29.8
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.6e-40 171.0 586 29.7
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 3.4e-40 170.6 541 33.6
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.4e-40 170.6 562 28.6
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 4.4e-40 170.2 578 32.9
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 5.7e-40 169.9 545 32.3
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 5.7e-40 169.9 505 28.9
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 5.7e-40 169.9 492 36.0
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 9.8e-40 169.1 520 30.0
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 9.8e-40 169.1 559 29.3
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.3e-39 168.7 392 39.5
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.7e-39 168.3 576 32.5
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.2e-39 167.9 567 29.6
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.8e-39 167.5 497 33.8
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 3.7e-39 167.2 549 31.5
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 3.7e-39 167.2 549 31.5
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.7e-39 167.2 554 32.3
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 4.9e-39 166.8 566 31.4
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.9e-39 166.8 539 30.2
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 6.3e-39 166.4 548 33.2
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 6.3e-39 166.4 548 33.2
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 8.3e-39 166.0 558 31.7
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 8.3e-39 166.0 558 31.7
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 8.3e-39 166.0 564 31.6
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 8.3e-39 166.0 566 29.2
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.1e-38 165.6 549 32.1
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.4e-38 165.2 563 32.5
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.8e-38 164.9 579 29.2
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 4.1e-38 163.7 555 33.7
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 4.1e-38 163.7 553 29.8
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 5.4e-38 163.3 545 30.8
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 5.4e-38 163.3 506 32.4
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 5.4e-38 163.3 566 29.0
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 2.0e-37 161.4 536 34.1
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 3.5e-37 160.6 339 36.3
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.5e-37 160.6 532 33.5
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 1.0e-36 159.1 510 30.6
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 2.9e-36 157.5 536 29.7
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 5.0e-36 156.8 656 29.3
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 8.6e-36 156.0 578 29.6
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.5e-35 155.2 555 30.8
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 7.3e-35 152.9 542 31.7
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 9.5e-35 152.5 358 36.3
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 1.6e-34 151.8 537 32.6
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 2.8e-34 151.0 544 30.3
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.8e-34 151.0 560 28.0
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-33 148.3 551 33.8
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.2e-33 146.7 349 35.8
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 8.9e-33 146.0 555 28.5
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-32 145.2 576 30.7
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.5e-32 145.2 623 27.1
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 4.4e-32 143.7 554 32.1
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.3e-31 142.1 371 31.8
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.7e-31 141.7 373 34.6
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.2e-31 141.4 480 28.5
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.7e-31 140.6 350 32.9
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.7e-31 140.6 544 29.0
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 6.4e-31 139.8 506 29.2
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.8e-30 138.3 373 35.1
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.7e-28 131.7 310 34.8
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.7e-28 131.7 408 31.6
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.5e-27 127.9 569 27.4
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.6e-26 125.2 364 31.6
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 8.0e-26 122.9 522 33.0
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 1.8e-25 121.7 363 32.2
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 4.4e-24 117.1 304 33.6
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 8.3e-23 112.8 340 36.2
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 7.8e-21 106.3 526 27.6
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 4.7e-18 97.1 119 46.2
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.0e-16 91.7 569 25.7
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 3.4e-16 90.9 89 52.8
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 2.9e-15 87.8 91 48.4
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 2.4e-14 84.7 245 28.2
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 2.5e-11 74.7 243 33.3
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 4.7e-10 70.5 165 33.9
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.6e-08 64.7 82 39.0
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.4e-08 64.3 267 37.1
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 9.9e-08 62.8 206 37.4
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.3e-07 62.4 53 54.7
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 2.9e-07 61.2 147 29.3
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.9e-07 61.2 139 32.4
Lj1g0027892 Lotus japonicus HOM05D000561 ORTHO05D000514 4.9e-07 60.5 132 32.6
Ca_15965_v3 Cicer arietinum L. HOM05D000561 ORTHO05D000514 6.4e-07 60.1 102 35.3
Glyma.04G037100 Glycine max HOM05D000561 ORTHO05D000514 1.9e-06 58.5 102 33.3
VMungo1309G2855 Vigna mungo HOM05D000561 ORTHO05D000514 1.9e-06 58.5 102 33.3
Aqoxy1G00237 Aquilegia oxysepala HOM05D000561 ORTHO05D000514 2.4e-06 58.2 89 32.6
Lalb_Chr22g0355241 Lupinus albus HOM05D000561 ORTHO05D000514 2.4e-06 58.2 155 30.3
Oeu009558.1 Olea europaea HOM05D000561 ORTHO05D000514 2.4e-06 58.2 74 39.2
ClCG05G019700 Citrullus lanatus HOM05D000561 ORTHO05D000514 3.2e-06 57.8 75 40.0
CsaV3_4G034120 Cucumis sativus L. HOM05D000561 ORTHO05D000514 4.1e-06 57.4 75 38.7
Gohir.A08G034600 Gossypium hirsutum HOM05D001628 ORTHO05D001568 5.4e-06 57.0 169 28.4
Gohir.D08G045100 Gossypium hirsutum HOM05D001628 ORTHO05D001568 5.4e-06 57.0 169 28.4
Gorai.004G044100 Gossypium raimondii HOM05D001628 ORTHO05D001568 5.4e-06 57.0 169 28.4
MD08G1106300 Malus domestica HOM05D000561 ORTHO05D000514 5.4e-06 57.0 101 35.6
Thecc.01G337900 Theobroma cacao HOM05D001628 ORTHO05D001568 5.4e-06 57.0 169 28.4
TWI56G1130 Tripterygium wilfordii HOM05D000561 ORTHO05D000514 5.4e-06 57.0 91 35.2
CSS0047220 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 7.1e-06 56.6 91 36.3
Ca_13308_v3 Cicer arietinum L. HOM05D000561 ORTHO05D000514 7.1e-06 56.6 113 31.0
COL.COLO4_06248 Corchorus olitorius HOM05D001628 ORTHO05D001568 7.1e-06 56.6 169 27.8
PSO339G4568 Papaver somniferum HOM05D000561 ORTHO05D000514 7.1e-06 56.6 157 29.9
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 7.1e-06 56.6 121 30.6
Duzib041G0032 Durio zibethinus HOM05D000561 ORTHO05D000514 9.2e-06 56.2 75 37.3
PSO384G1656 Papaver somniferum HOM05D000561 ORTHO05D000514 9.2e-06 56.2 157 29.3
Zm00001eb182750 Zea mays HOM05D000561 ORTHO05D000514 9.2e-06 56.2 170 29.4


User provided reference genes

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