Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 0.0e+00 1086.6 550 100.0
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.4e-245 852.8 550 80.0
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 7.8e-191 671.0 472 71.8
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.1e-189 667.2 431 74.5
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 3.0e-187 659.1 449 72.2
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 5.2e-187 658.3 456 71.3
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 6.8e-187 657.9 517 65.4
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 3.4e-186 655.6 449 71.9
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 7.5e-186 654.4 430 73.7
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 2.2e-185 652.9 432 73.6
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 4.9e-185 651.7 455 70.5
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 6.4e-185 651.4 451 72.5
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 6.4e-185 651.4 447 71.4
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 6.4e-185 651.4 449 71.0
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 2.4e-184 649.4 432 73.6
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 2.4e-184 649.4 456 70.2
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 3.2e-184 649.0 455 70.5
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 5.4e-184 648.3 448 71.0
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 7.0e-184 647.9 449 70.4
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 9.2e-184 647.5 429 74.1
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.2e-183 647.1 435 71.3
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.2e-183 647.1 478 67.8
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.6e-183 646.7 435 72.4
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.6e-183 646.7 433 72.1
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 2.7e-183 646.0 439 71.3
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.5e-183 645.6 449 70.4
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 3.5e-183 645.6 439 71.3
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 4.6e-183 645.2 432 73.4
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 4.6e-183 645.2 457 69.1
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 6.0e-183 644.8 519 63.6
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 6.0e-183 644.8 440 72.3
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 6.0e-183 644.8 454 70.7
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 7.8e-183 644.4 428 73.1
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 7.8e-183 644.4 431 73.5
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 7.8e-183 644.4 439 71.3
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.0e-182 644.0 431 73.3
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.3e-182 643.7 430 73.3
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 2.3e-182 642.9 449 71.0
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 3.9e-182 642.1 428 72.4
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 3.9e-182 642.1 432 72.0
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 6.6e-182 641.3 455 69.9
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 6.6e-182 641.3 432 72.5
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 6.6e-182 641.3 436 72.0
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 8.6e-182 641.0 432 72.5
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.1e-181 640.6 451 70.1
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.9e-181 639.8 445 70.3
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.9e-181 639.8 423 73.3
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.9e-181 639.8 423 73.3
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 1.9e-181 639.8 435 72.6
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 1.9e-181 639.8 432 71.5
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.9e-181 639.8 433 72.5
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 2.5e-181 639.4 453 70.2
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 4.3e-181 638.6 432 72.2
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 4.3e-181 638.6 433 72.5
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 5.6e-181 638.3 486 66.5
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 5.6e-181 638.3 521 63.0
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 7.3e-181 637.9 432 71.1
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 1.2e-180 637.1 452 69.2
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.2e-180 637.1 520 63.1
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 1.6e-180 636.7 440 70.9
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 2.1e-180 636.3 440 70.0
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 2.1e-180 636.3 455 68.6
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.1e-180 636.3 457 68.7
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 2.8e-180 636.0 432 72.2
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.8e-180 636.0 442 70.6
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 3.6e-180 635.6 431 72.6
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.7e-180 635.2 430 72.6
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 6.2e-180 634.8 428 72.7
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 8.0e-180 634.4 440 69.5
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 8.0e-180 634.4 428 71.7
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 1.1e-179 634.0 435 71.3
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 2.3e-179 632.9 440 69.3
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.3e-179 632.9 422 72.0
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 2.3e-179 632.9 451 69.6
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 4.0e-179 632.1 456 68.6
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 8.9e-179 630.9 433 70.9
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 1.5e-178 630.2 441 70.3
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 2.0e-178 629.8 456 68.4
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 2.6e-178 629.4 465 67.3
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 3.4e-178 629.0 428 72.0
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 4.4e-178 628.6 459 68.0
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 7.5e-178 627.9 445 70.6
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 7.5e-178 627.9 422 72.7
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.5e-178 627.9 428 71.7
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 9.8e-178 627.5 440 70.5
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 1.7e-177 626.7 456 67.1
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.2e-177 626.3 422 73.0
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 2.9e-177 625.9 439 68.8
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 3.7e-177 625.5 430 71.6
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 3.7e-177 625.5 418 72.7
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 6.4e-177 624.8 422 72.0
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 1.4e-176 623.6 422 71.3
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 4.1e-176 622.1 422 71.8
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 4.1e-176 622.1 422 72.0
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 4.1e-176 622.1 422 72.0
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 5.4e-176 621.7 418 72.2
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 5.4e-176 621.7 422 71.3
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 9.2e-176 620.9 422 71.1
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 9.2e-176 620.9 423 71.6
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 3.5e-175 619.0 422 71.6
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 6.0e-175 618.2 423 72.1
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 1.0e-174 617.5 457 67.4
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.0e-174 617.5 432 70.4
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 1.0e-174 617.5 422 71.3
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.7e-174 616.7 481 64.9
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 2.3e-174 616.3 430 71.2
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 3.0e-174 615.9 422 71.8
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 3.9e-174 615.5 423 71.2
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.5e-173 613.6 432 69.7
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 1.9e-173 613.2 422 71.1
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 6.2e-172 608.2 473 65.3
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 2.3e-171 606.3 447 68.0
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 8.9e-171 604.4 441 68.9
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 5.8e-170 601.7 441 68.7
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.9e-166 589.0 403 72.5
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.5e-162 577.0 387 73.1
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.7e-161 573.5 432 66.4
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 4.1e-160 568.9 560 55.9
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 7.8e-151 538.1 361 72.6
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 2.8e-148 529.6 431 62.4
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 6.4e-145 518.5 431 61.5
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.1e-144 517.7 433 60.0
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 8.4e-137 491.5 328 73.5
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.1e-133 481.1 302 78.5
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.5e-130 470.7 302 75.8
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 1.1e-128 464.5 332 69.9
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 4.3e-125 452.6 310 73.5
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 8.2e-124 448.4 324 67.6
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.2e-121 440.3 297 75.4
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 4.6e-119 432.6 427 56.4
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.6e-111 407.5 297 70.4
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 6.1e-111 405.6 276 70.3
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.9e-106 389.0 257 74.7
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 8.5e-105 385.2 430 47.0
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 5.7e-93 345.9 435 42.3
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 4.4e-85 319.7 242 67.8
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.7e-68 263.5 354 41.5
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.4e-61 240.4 173 63.6
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.9e-48 198.0 185 53.5
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.4e-46 191.8 160 63.8
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 2.3e-41 174.5 120 71.7
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 9.6e-40 169.1 112 72.3
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.3e-39 168.7 131 58.8
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 4.9e-36 156.8 122 60.7
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.2e-31 139.8 134 50.0
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 1.7e-28 131.7 90 72.2
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 5.6e-24 116.7 85 64.7
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.3e-23 115.5 75 70.7
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 1.3e-23 115.5 75 70.7
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 1.6e-23 115.2 85 64.7
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 6.2e-23 113.2 75 70.7
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 6.2e-23 113.2 85 63.5
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 3.1e-22 110.9 82 63.4
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 5.3e-22 110.2 86 57.0
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 1.0e-20 105.9 77 63.6
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 2.9e-20 104.4 258 31.4
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 5.1e-17 93.6 61 68.9
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 5.1e-17 93.6 61 68.9
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 6.7e-17 93.2 61 68.9
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 2.8e-15 87.8 82 58.5
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 4.8e-15 87.0 61 68.9


User provided reference genes

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