Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 7.0e-142 507.3 258 100.0
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 1.3e-108 396.7 256 78.5
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 3.6e-82 308.9 262 63.7
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 6.2e-82 308.1 255 63.1
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 5.2e-81 305.1 225 69.8
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 5.2e-81 305.1 256 63.3
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 6.8e-81 304.7 263 61.2
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 1.5e-80 303.5 255 63.1
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 1.5e-80 303.5 250 63.6
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 2.6e-80 302.8 256 62.9
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 4.4e-80 302.0 242 64.9
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 4.4e-80 302.0 261 64.0
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 5.8e-80 301.6 255 63.1
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 7.6e-80 301.2 255 62.0
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 9.9e-80 300.8 253 62.8
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 2.2e-79 299.7 251 62.5
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 2.9e-79 299.3 255 61.2
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 2.9e-79 299.3 256 62.1
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 2.9e-79 299.3 254 63.4
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 2.9e-79 299.3 255 62.4
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 2.9e-79 299.3 255 62.4
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 3.8e-79 298.9 252 64.3
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 3.8e-79 298.9 254 62.6
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 4.9e-79 298.5 256 62.1
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 4.9e-79 298.5 257 62.6
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 4.9e-79 298.5 254 61.4
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 4.9e-79 298.5 255 61.6
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 6.4e-79 298.1 255 61.6
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 6.4e-79 298.1 255 61.6
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 6.4e-79 298.1 228 67.5
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 6.4e-79 298.1 221 69.2
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 8.4e-79 297.7 254 63.0
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 8.4e-79 297.7 251 62.9
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 1.1e-78 297.4 255 61.6
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 1.4e-78 297.0 256 61.7
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 1.4e-78 297.0 251 62.5
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 1.4e-78 297.0 255 62.7
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 1.4e-78 297.0 255 62.0
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 1.4e-78 297.0 255 62.0
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 1.9e-78 296.6 221 68.8
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 1.9e-78 296.6 255 62.7
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 2.4e-78 296.2 224 67.9
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 2.4e-78 296.2 221 68.8
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 3.2e-78 295.8 251 62.2
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 3.2e-78 295.8 253 61.7
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 3.2e-78 295.8 253 62.1
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 4.2e-78 295.4 253 61.7
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 4.2e-78 295.4 253 62.1
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 4.2e-78 295.4 249 61.4
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 5.4e-78 295.0 229 65.9
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 7.1e-78 294.7 253 62.5
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 7.1e-78 294.7 255 61.2
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 7.1e-78 294.7 253 62.1
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 7.1e-78 294.7 256 62.1
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 9.3e-78 294.3 254 62.2
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 9.3e-78 294.3 254 60.6
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 1.6e-77 293.5 254 61.4
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 1.6e-77 293.5 256 61.3
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 1.6e-77 293.5 255 62.0
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 2.1e-77 293.1 228 65.8
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 2.7e-77 292.7 260 60.0
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 3.5e-77 292.4 256 60.9
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 4.6e-77 292.0 234 65.0
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 6.0e-77 291.6 253 62.1
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 6.0e-77 291.6 253 62.1
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 7.8e-77 291.2 226 66.4
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 7.8e-77 291.2 260 60.0
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 7.8e-77 291.2 257 61.1
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 7.8e-77 291.2 265 59.6
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.0e-76 290.8 244 63.5
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 1.0e-76 290.8 252 61.9
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 1.3e-76 290.4 257 61.1
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 1.3e-76 290.4 253 62.8
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 1.7e-76 290.0 254 61.4
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 1.7e-76 290.0 257 60.7
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 2.3e-76 289.7 250 60.8
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 3.0e-76 289.3 244 63.1
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 3.9e-76 288.9 222 67.1
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 3.9e-76 288.9 253 58.5
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 5.1e-76 288.5 252 61.1
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 8.7e-76 287.7 258 60.1
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 1.1e-75 287.3 253 60.9
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 1.1e-75 287.3 219 68.9
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 1.1e-75 287.3 228 64.9
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 4.3e-75 285.4 224 66.1
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 4.3e-75 285.4 255 61.2
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 1.3e-74 283.9 252 58.7
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 1.1e-73 280.8 218 67.0
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 1.4e-73 280.4 244 62.3
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 1.8e-73 280.0 254 56.7
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 1.5e-72 276.9 271 57.2
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 2.6e-72 276.2 224 65.2
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.3e-71 273.9 237 61.6
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 1.4e-70 270.4 266 56.4
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 1.2e-69 267.3 240 59.2
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 2.1e-69 266.5 249 59.4
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 6.0e-69 265.0 241 57.3
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 3.9e-68 262.3 206 64.1
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 3.9e-68 262.3 240 55.4
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 1.1e-67 260.8 219 64.4
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 3.3e-67 259.2 303 50.8
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 7.3e-67 258.1 230 60.0
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 1.3e-66 257.3 240 57.9
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 8.4e-63 244.6 169 72.2
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 3.2e-62 242.7 160 73.1
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 7.1e-62 241.5 255 52.5
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.3e-60 237.3 169 69.8
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 1.5e-59 233.8 250 51.2
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 7.4e-59 231.5 205 59.0
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 2.0e-56 223.4 260 51.2
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.9e-54 216.9 206 58.3
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 4.3e-51 205.7 196 56.6
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 8.2e-50 201.4 180 61.7
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 1.8e-49 200.3 195 53.8
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 1.0e-47 194.5 185 55.1
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 2.3e-44 183.3 223 48.4
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 3.0e-44 183.0 115 77.4
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 9.7e-43 177.9 255 44.3
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 1.1e-41 174.5 221 48.9
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 1.8e-41 173.7 132 66.7
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 2.5e-35 153.3 265 38.5
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 6.3e-34 148.7 101 73.3
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 1.1e-27 127.9 150 47.3
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 1.4e-25 120.9 142 50.0
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 5.3e-25 119.0 141 51.8
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 1.6e-24 117.5 67 79.1
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 8.8e-20 101.7 78 66.7
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 2.6e-19 100.1 59 76.3
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 5.9e-16 89.0 56 71.4
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 1.3e-15 87.8 127 42.5
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 5.5e-14 82.4 72 65.3
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 1.4e-09 67.8 77 45.5
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 3.1e-09 66.6 87 44.8
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 7.0e-09 65.5 74 47.3
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 7.0e-09 65.5 77 44.2
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 1.2e-08 64.7 44 70.5
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 2.2e-07 60.5 37 70.3
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 3.2e-06 56.6 136 34.6


User provided reference genes

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