Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 2.5e-98 362.1 179 100.0
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 9.0e-56 220.7 177 65.5
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 3.3e-50 202.2 145 65.5
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.3e-49 200.3 171 59.1
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.6e-49 199.9 174 57.5
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.6e-49 199.9 175 58.9
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.6e-49 199.9 173 59.5
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 2.2e-49 199.5 171 58.5
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 2.2e-49 199.5 170 58.8
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 2.8e-49 199.1 172 59.3
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.7e-49 198.7 171 57.3
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 4.8e-49 198.4 171 59.6
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 4.8e-49 198.4 172 59.3
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.8e-49 198.4 174 57.5
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 6.3e-49 198.0 171 57.9
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 8.2e-49 197.6 173 59.0
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 8.2e-49 197.6 175 57.1
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 8.2e-49 197.6 175 57.1
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 8.2e-49 197.6 175 57.1
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 8.2e-49 197.6 177 55.9
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.1e-48 197.2 174 58.6
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.8e-48 196.4 181 58.0
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 1.8e-48 196.4 171 58.5
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.4e-48 196.1 174 58.0
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.4e-48 196.1 175 57.1
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 2.4e-48 196.1 177 57.1
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 3.1e-48 195.7 171 57.9
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 4.1e-48 195.3 174 57.5
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 4.1e-48 195.3 172 58.1
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.1e-48 195.3 172 61.0
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.1e-48 195.3 172 61.0
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 5.3e-48 194.9 174 58.6
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 5.3e-48 194.9 127 71.7
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 5.3e-48 194.9 172 58.7
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 6.9e-48 194.5 176 58.0
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 6.9e-48 194.5 174 55.2
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 6.9e-48 194.5 175 57.7
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 6.9e-48 194.5 175 57.7
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 6.9e-48 194.5 175 58.9
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 6.9e-48 194.5 176 57.4
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.2e-47 193.7 178 55.1
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.2e-47 193.7 171 57.9
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.5e-47 193.4 168 58.3
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.5e-47 193.4 171 57.9
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.0e-47 193.0 170 57.1
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 2.0e-47 193.0 178 52.8
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 2.0e-47 193.0 172 56.4
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 2.6e-47 192.6 175 58.9
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 3.4e-47 192.2 173 57.2
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 4.5e-47 191.8 172 58.1
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 5.9e-47 191.4 174 59.2
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 5.9e-47 191.4 184 57.1
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 7.7e-47 191.0 174 56.3
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 7.7e-47 191.0 175 56.6
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.0e-46 190.7 174 55.7
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.0e-46 190.7 176 56.8
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.0e-46 190.7 184 56.0
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 1.3e-46 190.3 173 57.2
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.3e-46 190.3 175 57.7
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 2.2e-46 189.5 178 54.5
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 2.9e-46 189.1 173 55.5
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 2.9e-46 189.1 167 57.5
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 3.8e-46 188.7 127 69.3
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 3.8e-46 188.7 173 56.6
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.8e-46 188.7 151 64.2
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 3.8e-46 188.7 178 55.6
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.5e-46 188.0 179 54.7
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 6.5e-46 188.0 170 58.8
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 6.5e-46 188.0 133 68.4
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 8.5e-46 187.6 173 54.9
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 8.5e-46 187.6 173 54.9
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 8.5e-46 187.6 146 62.3
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 8.5e-46 187.6 128 68.8
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 8.5e-46 187.6 177 54.2
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 8.5e-46 187.6 174 55.7
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 1.1e-45 187.2 131 69.5
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.1e-45 187.2 173 56.6
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.4e-45 186.8 134 64.9
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 1.4e-45 186.8 150 62.7
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.9e-45 186.4 174 51.7
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 1.9e-45 186.4 173 54.3
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 1.9e-45 186.4 173 54.3
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.9e-45 186.4 176 56.8
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 1.9e-45 186.4 183 51.9
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.9e-45 186.4 179 55.3
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.9e-45 186.4 168 57.7
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.9e-45 186.4 126 70.6
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 2.5e-45 186.0 143 64.3
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 2.5e-45 186.0 128 70.3
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.5e-45 186.0 179 55.3
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.2e-45 185.7 174 56.9
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 3.2e-45 185.7 180 55.6
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 3.2e-45 185.7 180 55.6
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 4.2e-45 185.3 127 67.7
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 4.2e-45 185.3 177 55.9
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 4.2e-45 185.3 169 56.2
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 5.5e-45 184.9 127 66.1
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 5.5e-45 184.9 170 57.1
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 5.5e-45 184.9 146 61.0
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 7.2e-45 184.5 127 67.7
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 9.4e-45 184.1 127 66.1
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 9.4e-45 184.1 169 55.6
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 1.2e-44 183.7 134 64.2
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.2e-44 183.7 170 53.5
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.2e-44 183.7 178 55.1
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.6e-44 183.3 140 62.9
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.1e-44 183.0 143 62.2
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.1e-44 183.0 143 62.2
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 3.6e-44 182.2 131 68.7
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 4.6e-44 181.8 178 55.6
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 6.1e-44 181.4 172 54.7
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 6.1e-44 181.4 183 54.1
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 7.9e-44 181.0 134 63.4
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 7.9e-44 181.0 149 61.7
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.0e-43 180.6 125 65.6
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 1.8e-43 179.9 169 54.4
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.8e-43 179.9 173 53.8
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 2.3e-43 179.5 169 53.8
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 3.0e-43 179.1 169 53.8
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 3.0e-43 179.1 146 58.9
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 3.9e-43 178.7 143 60.1
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 3.9e-43 178.7 174 52.3
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 5.1e-43 178.3 177 54.2
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 4.3e-42 175.3 130 67.7
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 4.3e-42 175.3 170 54.1
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 5.7e-42 174.9 122 67.2
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 9.7e-42 174.1 180 51.7
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 9.7e-42 174.1 169 52.7
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 8.2e-41 171.0 117 68.4
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.8e-40 169.9 173 51.4
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 4.1e-40 168.7 124 63.7
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 4.1e-40 168.7 166 52.4
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.2e-39 167.2 118 66.1
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 2.9e-38 162.5 154 53.9
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.1e-37 160.6 146 58.2
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 4.2e-37 158.7 127 63.0
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 7.2e-37 157.9 179 49.2
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 9.4e-37 157.5 175 49.7
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 3.0e-35 152.5 244 38.5
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.8e-30 135.6 111 60.4
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.6e-28 129.0 82 72.0
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 8.0e-28 127.9 86 70.9
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 9.7e-26 120.9 85 70.6
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 7.0e-24 114.8 172 40.1
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.2e-23 114.0 175 37.7
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 6.5e-22 108.2 118 44.1
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 8.5e-22 107.8 132 45.5
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.1e-21 107.5 118 50.0
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 2.5e-21 106.3 124 46.0
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 1.6e-20 103.6 115 50.4
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 6.1e-20 101.7 137 44.5
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 3.4e-18 95.9 105 40.0
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 5.4e-16 88.6 169 35.5
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.2e-15 87.4 119 44.5
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 4.7e-12 75.5 99 45.5
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 4.7e-12 75.5 99 45.5
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.4e-10 68.9 46 69.6
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 5.7e-10 68.6 102 35.3
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 6.3e-09 65.1 79 44.3
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 5.9e-07 58.5 86 39.5
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.3e-06 56.6 75 41.3


User provided reference genes

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