Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 0.0e+00 1463.4 729 100.0
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 0.0e+00 1463.4 729 100.0
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 0.0e+00 1263.4 732 86.2
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 1.9e-176 623.6 705 49.9
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 2.8e-156 556.6 709 45.0
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 9.1e-147 525.0 642 46.1
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 6.8e-134 482.3 570 47.4
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 3.9e-121 439.9 568 41.9
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 2.7e-114 417.2 620 40.6
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.4e-110 404.8 595 39.3
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 1.9e-107 394.4 601 38.8
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 9.2e-107 392.1 613 37.7
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 2.3e-105 387.5 648 36.7
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 3.0e-105 387.1 614 39.4
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 5.1e-105 386.3 564 39.5
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 5.1e-105 386.3 670 38.2
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 5.6e-104 382.9 583 38.9
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 5.6e-104 382.9 634 37.2
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 9.5e-104 382.1 578 39.6
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 6.2e-103 379.4 601 39.4
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 4.0e-102 376.7 614 38.1
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 5.2e-102 376.3 615 37.6
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 6.8e-102 375.9 597 38.9
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 8.9e-102 375.6 611 38.5
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 1.2e-101 375.2 648 36.1
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 4.4e-101 373.2 564 40.8
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 5.8e-101 372.9 607 39.9
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 7.6e-101 372.5 601 37.3
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 1.3e-100 371.7 663 37.1
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 1.3e-100 371.7 570 39.8
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 1.7e-100 371.3 606 38.4
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 2.2e-100 370.9 624 38.5
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 2.9e-100 370.5 622 37.1
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 3.7e-100 370.2 566 38.7
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 4.9e-100 369.8 550 39.6
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 1.1e-99 368.6 622 36.7
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 1.9e-99 367.9 598 38.1
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 5.4e-99 366.3 620 37.4
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 1.2e-98 365.2 625 37.0
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 2.1e-98 364.4 629 36.6
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 2.7e-98 364.0 585 37.3
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 6.0e-98 362.8 633 36.7
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 3.9e-97 360.1 626 35.9
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 8.6e-97 359.0 593 39.0
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 3.3e-96 357.1 669 37.4
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 4.3e-96 356.7 540 39.6
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 5.6e-96 356.3 571 39.2
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 9.6e-96 355.5 634 35.8
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.2e-95 355.1 615 38.2
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 2.8e-95 354.0 577 38.5
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 4.7e-95 353.2 653 35.2
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 8.1e-95 352.4 595 37.1
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 8.1e-95 352.4 659 35.7
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 8.1e-95 352.4 551 38.8
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-94 352.1 607 37.6
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 1.1e-94 352.1 602 37.9
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 1.4e-94 351.7 626 36.1
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 1.4e-94 351.7 659 35.7
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 2.4e-94 350.9 564 39.4
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 3.1e-94 350.5 583 38.3
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 6.8e-94 349.4 632 37.8
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.2e-93 348.6 535 39.4
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 2.0e-93 347.8 568 38.6
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 3.4e-93 347.1 586 35.8
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 3.4e-93 347.1 596 35.6
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 5.8e-93 346.3 727 33.1
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 5.8e-93 346.3 616 36.0
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 5.8e-93 346.3 583 38.1
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 7.6e-93 345.9 670 34.5
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.3e-92 345.1 618 35.6
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 1.7e-92 344.7 663 34.2
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 2.9e-92 344.0 718 33.4
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 2.9e-92 344.0 675 35.4
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 4.9e-92 343.2 597 36.9
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 6.4e-92 342.8 577 38.5
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 8.4e-92 342.4 538 39.6
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.1e-91 342.0 577 38.8
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.1e-91 342.0 490 41.6
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 1.4e-91 341.7 561 38.0
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.9e-91 341.3 602 35.7
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 3.2e-91 340.5 562 39.0
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 7.1e-91 339.3 594 36.7
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 9.3e-91 339.0 576 36.6
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.6e-90 338.2 575 36.9
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 3.5e-90 337.0 568 36.3
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 1.3e-89 335.1 580 38.4
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 1.7e-89 334.7 620 35.0
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 2.3e-89 334.3 609 35.3
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 2.3e-89 334.3 630 36.0
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 2.3e-89 334.3 628 35.2
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 5.1e-89 333.2 592 36.1
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 3.3e-88 330.5 577 36.2
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 1.3e-87 328.6 562 36.3
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.8e-87 327.4 595 36.6
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 3.6e-87 327.0 619 33.6
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 4.8e-87 326.6 565 37.5
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 8.1e-87 325.9 656 34.1
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 3.1e-86 323.9 599 36.4
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 6.9e-86 322.8 671 33.8
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 6.9e-86 322.8 581 35.8
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 9.0e-86 322.4 585 36.1
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 9.9e-85 318.9 585 35.9
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 9.9e-85 318.9 584 35.4
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 1.7e-84 318.2 578 35.1
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 1.7e-84 318.2 581 35.6
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.7e-84 318.2 621 34.1
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.7e-84 318.2 621 34.1
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 2.2e-84 317.8 584 35.4
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.2e-84 317.8 585 35.7
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 8.4e-84 315.8 576 34.2
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 8.4e-84 315.8 584 35.1
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 2.4e-83 314.3 577 35.4
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 9.3e-83 312.4 588 34.7
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.1e-82 311.2 560 36.1
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 6.0e-82 309.7 596 35.2
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 7.9e-82 309.3 619 34.4
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.0e-81 308.9 621 33.5
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 1.5e-80 305.1 572 36.4
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.5e-80 304.3 604 34.4
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 2.5e-80 304.3 643 34.5
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 1.6e-79 301.6 592 33.6
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 3.6e-79 300.4 532 37.6
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 4.8e-79 300.1 652 32.7
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.2e-77 295.4 423 39.5
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 4.5e-77 293.5 610 32.5
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 2.4e-75 287.7 586 35.3
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 7.1e-75 286.2 507 37.1
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.1e-74 284.6 581 34.8
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 6.0e-74 283.1 440 38.2
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 5.1e-73 280.0 624 31.7
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 1.3e-71 275.4 569 32.3
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 3.7e-71 273.9 596 33.9
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 2.0e-69 268.1 588 33.0
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 2.0e-69 268.1 652 31.6
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 4.5e-69 266.9 585 33.3
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 4.6e-66 256.9 627 31.7
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 2.5e-64 251.1 597 31.5
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 1.3e-63 248.8 588 32.0
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 4.1e-62 243.8 588 31.8
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 6.5e-60 236.5 632 30.7
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 4.2e-59 233.8 612 29.9
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 1.2e-58 232.3 444 34.5
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 2.5e-56 224.6 550 31.8
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 1.6e-55 221.9 430 35.1
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 1.0e-52 212.6 446 34.3
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 6.1e-50 203.4 456 33.1
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 3.9e-49 200.7 283 40.3
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 3.9e-49 200.7 485 31.3
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 7.4e-48 196.4 380 35.3
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 8.2e-47 193.0 421 33.5
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 8.2e-47 193.0 352 37.5
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.3e-41 174.9 364 33.5
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.1e-40 172.6 379 33.0
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 9.7e-40 169.5 737 25.4
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.2e-36 158.3 350 32.9
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 5.0e-36 157.1 258 36.4
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 7.2e-35 153.3 188 44.1
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 6.7e-33 146.7 242 36.8
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 7.5e-32 143.3 205 40.0
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 6.3e-31 140.2 346 31.5
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 2.4e-30 138.3 268 35.4
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 2.4e-30 138.3 265 32.8
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.2e-29 136.0 642 25.2
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.2e-24 119.4 182 37.4
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 2.2e-23 115.2 202 33.7
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 5.4e-22 110.5 370 27.0
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 1.0e-20 106.3 217 34.6
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 1.2e-18 99.4 212 36.3
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 2.1e-18 98.6 157 38.2
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 1.4e-14 85.9 78 50.0
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 1.8e-14 85.5 215 29.8
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 3.6e-10 71.2 151 31.1
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 1.2e-08 66.2 208 29.3
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.2e-07 62.0 133 30.8
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 3.7e-07 61.2 156 31.4
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 1.8e-06 58.9 88 39.8
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 4.1e-06 57.8 214 23.8


User provided reference genes

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