Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 0.0e+00 1359.4 727 100.0
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 3.8e-238 828.6 716 62.6
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 3.0e-222 775.8 704 58.2
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 8.0e-220 767.7 705 56.6
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 2.4e-216 756.1 721 55.3
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 2.3e-214 749.6 720 54.9
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 1.1e-213 747.3 716 55.2
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 2.5e-213 746.1 718 54.5
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 4.7e-212 741.9 720 54.3
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 3.1e-211 739.2 705 54.5
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 4.0e-211 738.8 712 55.1
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 4.0e-211 738.8 705 54.6
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 5.2e-211 738.4 728 53.2
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 5.2e-211 738.4 707 55.3
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 2.0e-210 736.5 728 53.6
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 2.6e-210 736.1 705 56.7
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 3.4e-210 735.7 716 54.2
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 3.4e-210 735.7 716 54.2
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 4.4e-210 735.3 711 55.1
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 7.5e-210 734.6 720 53.8
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 9.9e-210 734.2 711 55.8
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 2.2e-209 733.0 705 54.8
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 2.4e-208 729.6 703 55.9
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 4.1e-208 728.8 724 53.6
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 5.4e-208 728.4 733 52.9
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 9.2e-208 727.6 715 52.4
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 9.2e-208 727.6 712 53.8
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 1.6e-207 726.9 713 54.1
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 2.1e-207 726.5 705 53.6
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 2.1e-207 726.5 709 53.9
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 2.7e-207 726.1 660 58.2
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 6.0e-207 724.9 716 54.2
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 7.8e-207 724.5 665 54.7
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 1.3e-206 723.8 712 53.4
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 1.7e-206 723.4 712 54.4
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 3.9e-206 722.2 716 54.1
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 5.1e-206 721.8 719 54.2
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 8.6e-206 721.1 711 53.2
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.5e-205 720.3 715 52.2
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.5e-205 720.3 715 52.2
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 7.3e-205 718.0 655 54.5
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 1.2e-204 717.2 718 53.8
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 1.6e-204 716.8 719 53.8
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 3.6e-204 715.7 700 53.1
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 6.2e-204 714.9 717 52.2
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 8.1e-204 714.5 715 52.2
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 8.9e-203 711.1 700 53.9
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 1.5e-202 710.3 728 52.9
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 2.0e-202 709.9 698 52.7
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.7e-201 706.8 699 53.1
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 1.1e-200 704.1 719 52.3
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 4.2e-200 702.2 711 52.3
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 5.4e-200 701.8 724 52.1
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 5.4e-200 701.8 716 52.7
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 5.4e-200 701.8 721 52.0
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 7.1e-200 701.4 719 51.7
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 9.2e-200 701.0 662 55.4
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 1.2e-199 700.7 717 51.9
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 2.7e-199 699.5 714 52.2
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 3.5e-199 699.1 714 52.5
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 6.0e-199 698.4 724 50.7
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.0e-198 697.6 714 50.0
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 1.0e-198 697.6 713 53.6
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.1e-197 694.1 712 52.8
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 2.5e-197 693.0 706 52.0
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.5e-197 693.0 763 50.2
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 3.3e-197 692.6 714 51.8
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 1.1e-195 687.6 702 52.6
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 6.9e-195 684.9 717 51.0
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 1.5e-194 683.7 665 54.1
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 1.3e-193 680.6 749 49.1
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 1.7e-193 680.2 749 49.1
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 4.9e-193 678.7 692 53.2
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 4.9e-193 678.7 715 50.5
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 9.3e-192 674.5 715 50.8
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 2.7e-191 672.9 711 50.5
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 6.0e-191 671.8 551 59.0
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 7.8e-191 671.4 662 54.2
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 7.8e-191 671.4 722 49.7
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 1.7e-190 670.2 718 49.6
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 6.6e-190 668.3 718 49.7
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 6.6e-190 668.3 714 50.0
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 2.5e-189 666.4 715 50.6
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 3.3e-189 666.0 715 50.6
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 3.3e-189 666.0 715 49.7
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 9.6e-189 664.5 714 50.1
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 9.6e-189 664.5 722 50.6
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 6.0e-183 645.2 504 60.7
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 9.6e-181 637.9 722 49.7
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 6.2e-180 635.2 722 49.6
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 5.3e-179 632.1 724 49.2
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 5.3e-179 632.1 724 49.2
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 1.2e-178 630.9 716 48.3
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 4.5e-178 629.0 724 49.3
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 7.1e-176 621.7 445 65.6
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 9.3e-176 621.3 746 47.7
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 1.1e-171 607.8 503 57.3
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 2.9e-169 599.7 1032 37.4
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 3.3e-165 586.3 716 46.2
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 7.9e-159 565.1 715 44.1
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 3.0e-158 563.1 741 46.0
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 1.1e-155 554.7 418 60.3
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 6.9e-155 552.0 714 45.0
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 5.0e-153 545.8 434 60.6
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 2.5e-152 543.5 862 39.1
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 6.5e-145 518.8 575 49.7
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 3.5e-138 496.5 693 42.6
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 6.8e-134 482.3 710 41.8
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 5.3e-131 472.6 534 47.4
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 9.1e-131 471.9 580 46.2
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 1.5e-125 454.5 548 46.5
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 4.4e-117 426.4 584 42.0
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 5.7e-117 426.0 477 51.4
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 8.1e-95 352.4 431 44.5
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 2.1e-90 337.8 616 36.2
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 2.1e-82 311.2 407 43.2
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.3e-80 303.9 418 44.0
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 5.6e-80 303.1 301 51.8
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 3.9e-73 280.4 298 48.7
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 4.8e-71 273.5 369 42.0
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 2.5e-64 251.1 335 42.4
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 4.5e-61 240.4 182 59.9
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 2.7e-58 231.1 245 48.2
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 1.1e-51 209.1 248 44.8
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 3.7e-47 194.1 186 51.6
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 1.8e-46 191.8 133 64.7
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.8e-46 191.8 262 42.4
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 5.0e-44 183.7 131 64.9
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 1.1e-43 182.6 119 68.9
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 5.5e-43 180.3 358 36.9
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 2.4e-38 164.9 107 68.2
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 5.1e-33 147.1 307 38.4
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 7.4e-32 143.3 112 60.7
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 2.4e-30 138.3 102 63.7
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 4.1e-30 137.5 107 58.9
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 7.0e-30 136.7 102 62.7
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.2e-29 136.0 89 68.5
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.2e-29 136.0 89 68.5
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.2e-29 136.0 89 68.5
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 7.7e-29 133.3 103 66.0
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 1.3e-28 132.5 300 37.0
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 1.7e-28 132.1 142 47.2
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.7e-28 132.1 83 71.1
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 1.9e-27 128.6 295 37.6
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 5.5e-27 127.1 291 37.8
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 1.2e-26 125.9 203 38.4
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 2.1e-26 125.2 119 50.4
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 1.0e-25 122.9 207 35.7
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 1.5e-24 119.0 99 53.5
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 2.6e-24 118.2 168 37.5
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 2.6e-24 118.2 272 37.1
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 1.7e-23 115.5 105 48.6
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-21 108.6 70 65.7
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 4.5e-21 107.5 79 60.8
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.8e-20 104.4 79 57.0
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 3.2e-19 101.3 70 60.0
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 8.8e-17 93.2 103 48.5
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-16 92.0 126 43.7
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 7.0e-14 83.6 74 47.3
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 1.2e-13 82.8 56 58.9
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 1.2e-13 82.8 99 41.4
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 1.2e-13 82.8 59 52.5
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 1.6e-13 82.4 74 45.9
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-13 82.0 60 55.0
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 1.0e-12 79.7 96 41.7
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-12 79.7 60 55.0
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-12 79.3 70 47.1
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 2.2e-12 78.6 56 60.7
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 5.0e-12 77.4 95 40.0
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 1.1e-11 76.3 46 71.7
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 4.7e-10 70.9 198 34.8
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 1.0e-09 69.7 72 48.6
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 1.8e-09 68.9 50 58.0
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 1.8e-09 68.9 50 58.0
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 1.5e-08 65.9 55 45.5
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 3.4e-08 64.7 63 46.0
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 4.4e-08 64.3 47 53.2
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 7.0e-06 57.0 59 45.8


User provided reference genes

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