Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 5.3e-142 507.7 256 100.0
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 9.1e-110 400.6 256 78.5
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 1.4e-86 323.6 263 63.9
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 4.5e-85 318.5 259 65.6
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 8.9e-81 304.3 226 65.9
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 8.9e-81 304.3 255 60.8
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 2.6e-80 302.8 256 60.2
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 7.5e-80 301.2 255 59.6
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 7.5e-80 301.2 216 69.9
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 1.7e-79 300.1 255 59.6
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 1.7e-79 300.1 255 59.2
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 2.2e-79 299.7 256 59.8
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 3.7e-79 298.9 256 59.8
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 3.7e-79 298.9 256 59.8
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 3.7e-79 298.9 226 66.4
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 6.4e-79 298.1 255 59.2
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 6.4e-79 298.1 255 59.2
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 6.4e-79 298.1 262 59.5
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 8.3e-79 297.7 255 59.2
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 8.3e-79 297.7 255 59.2
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 1.1e-78 297.4 221 68.3
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 1.9e-78 296.6 226 65.0
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 2.4e-78 296.2 253 60.5
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 3.2e-78 295.8 253 59.7
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 4.1e-78 295.4 257 60.7
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 4.1e-78 295.4 225 65.3
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 5.4e-78 295.0 254 60.2
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 5.4e-78 295.0 253 61.7
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 7.0e-78 294.7 257 60.7
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 7.0e-78 294.7 254 59.8
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 7.0e-78 294.7 256 60.5
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 7.0e-78 294.7 254 59.1
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 9.2e-78 294.3 226 65.9
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 1.2e-77 293.9 256 57.8
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 1.6e-77 293.5 256 59.4
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 2.0e-77 293.1 230 63.5
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 2.0e-77 293.1 254 59.4
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 2.0e-77 293.1 256 60.2
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 2.7e-77 292.7 224 67.0
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 4.6e-77 292.0 256 59.8
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 6.0e-77 291.6 252 59.9
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 6.0e-77 291.6 253 60.9
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.0e-76 290.8 252 59.5
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 1.3e-76 290.4 223 65.9
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 1.3e-76 290.4 253 60.1
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 1.3e-76 290.4 253 60.1
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 1.7e-76 290.0 252 57.5
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 1.7e-76 290.0 254 60.6
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 1.7e-76 290.0 226 65.9
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 2.3e-76 289.7 258 58.5
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 2.3e-76 289.7 258 59.3
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 3.0e-76 289.3 253 59.3
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 3.9e-76 288.9 254 59.8
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 3.9e-76 288.9 256 60.2
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 5.0e-76 288.5 256 61.3
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 6.6e-76 288.1 219 66.2
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 6.6e-76 288.1 252 59.9
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 6.6e-76 288.1 226 64.6
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 8.6e-76 287.7 262 58.8
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 8.6e-76 287.7 253 58.9
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 1.5e-75 287.0 222 64.9
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 1.5e-75 287.0 254 58.3
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.5e-75 287.0 261 60.5
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 1.9e-75 286.6 257 60.3
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 2.5e-75 286.2 257 58.4
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 2.5e-75 286.2 257 59.5
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 3.3e-75 285.8 257 58.4
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 3.3e-75 285.8 257 60.3
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 4.3e-75 285.4 226 62.8
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 5.6e-75 285.0 225 63.1
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 9.5e-75 284.3 259 57.9
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 9.5e-75 284.3 253 58.1
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 9.5e-75 284.3 256 58.2
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 9.5e-75 284.3 224 63.4
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 1.2e-74 283.9 223 65.5
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 2.8e-74 282.7 219 64.8
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 3.6e-74 282.3 212 67.9
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 3.6e-74 282.3 251 58.2
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 4.7e-74 282.0 254 58.7
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 8.0e-74 281.2 243 58.8
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 8.0e-74 281.2 271 56.5
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 1.1e-73 280.8 225 64.4
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 1.4e-73 280.4 221 63.3
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 1.4e-73 280.4 221 63.3
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 1.4e-73 280.4 222 64.4
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 2.3e-73 279.6 243 58.4
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 2.3e-73 279.6 254 57.1
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 5.2e-73 278.5 221 62.9
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.2e-72 277.3 257 60.3
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 1.5e-72 276.9 227 62.6
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 7.5e-72 274.6 270 56.3
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 9.8e-72 274.2 248 60.1
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 1.7e-71 273.5 266 57.9
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 2.2e-71 273.1 254 53.5
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 2.4e-70 269.6 240 59.2
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 9.2e-70 267.7 240 57.1
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 5.1e-68 261.9 229 57.6
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 1.1e-67 260.8 226 61.1
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 2.5e-67 259.6 206 62.1
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 3.3e-67 259.2 258 53.5
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 1.2e-66 257.3 211 64.5
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 2.1e-66 256.5 243 56.0
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 2.8e-66 256.1 242 55.8
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 2.8e-66 256.1 204 62.3
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.2e-61 240.7 162 72.2
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 2.7e-61 239.6 249 53.8
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 3.5e-61 239.2 160 71.9
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 2.5e-59 233.0 162 69.8
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 4.0e-57 225.7 175 63.4
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 7.6e-56 221.5 187 59.4
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 1.6e-53 213.8 227 50.2
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 7.3e-51 204.9 195 53.3
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 6.2e-50 201.8 185 56.2
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 1.4e-49 200.7 180 60.0
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 5.3e-49 198.7 229 50.2
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 2.7e-45 186.4 221 47.5
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 2.5e-43 179.9 189 51.3
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 4.3e-43 179.1 112 75.9
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 8.1e-42 174.9 115 73.9
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 3.4e-40 169.5 255 40.8
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 5.1e-36 155.6 260 38.5
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 5.6e-35 152.1 101 71.3
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 6.0e-29 132.1 150 47.3
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 4.0e-25 119.4 67 79.1
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.2e-24 117.9 142 48.6
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 2.6e-24 116.7 108 54.6
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 1.6e-21 107.5 79 65.8
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 7.4e-19 98.6 117 44.4
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 9.7e-19 98.2 59 74.6
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 9.0e-17 91.7 72 58.3
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 2.0e-11 73.9 72 59.7
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 5.3e-09 65.9 48 60.4
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 9.1e-09 65.1 76 42.1
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-08 64.7 87 43.7
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 3.4e-08 63.2 56 50.0
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 1.3e-07 61.2 41 65.9
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 2.9e-07 60.1 36 72.2
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 5.0e-07 59.3 134 33.6


User provided reference genes

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