Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 4.9e-189 664.5 372 100.0
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 3.0e-93 346.3 285 60.0
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.2e-91 340.9 290 59.0
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 3.1e-90 336.3 300 57.7
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.0e-90 335.9 295 58.6
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.0e-90 335.9 290 58.6
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 6.8e-90 335.1 290 57.9
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.5e-89 334.0 292 58.6
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.6e-89 333.2 290 57.9
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.4e-89 332.8 296 58.4
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 5.8e-89 332.0 288 59.0
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 5.8e-89 332.0 290 57.9
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 7.5e-89 331.6 300 56.0
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 7.5e-89 331.6 292 57.5
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 7.5e-89 331.6 346 50.6
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 7.5e-89 331.6 290 59.0
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.7e-88 330.5 290 58.3
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.7e-88 330.5 305 55.1
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.9e-88 329.7 290 57.9
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.7e-88 329.3 290 57.9
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.9e-88 328.9 287 57.5
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.9e-88 328.9 292 57.9
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 6.4e-88 328.6 290 57.6
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 6.4e-88 328.6 300 56.0
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 6.4e-88 328.6 300 56.0
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 6.4e-88 328.6 300 57.0
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 6.4e-88 328.6 288 56.9
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 8.3e-88 328.2 289 57.8
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 8.3e-88 328.2 290 57.9
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.4e-87 327.4 294 55.1
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.4e-87 327.4 290 57.9
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.4e-87 327.4 298 57.0
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.9e-87 327.0 294 54.8
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.9e-87 327.0 292 57.5
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.9e-87 327.0 290 57.9
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.9e-87 327.0 297 55.9
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.4e-87 326.6 296 57.1
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 2.4e-87 326.6 290 57.2
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.4e-87 326.6 290 57.2
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 4.1e-87 325.9 288 56.6
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 5.4e-87 325.5 285 58.2
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 5.4e-87 325.5 292 58.2
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 5.4e-87 325.5 290 56.9
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.4e-87 325.5 300 57.0
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 7.1e-87 325.1 294 55.1
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 7.1e-87 325.1 297 56.6
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 7.1e-87 325.1 293 55.6
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.2e-86 324.3 290 58.3
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 1.2e-86 324.3 290 55.2
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 2.1e-86 323.6 287 56.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.1e-86 323.6 297 55.9
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.7e-86 323.2 290 57.6
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.5e-86 322.8 290 57.6
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 6.0e-86 322.0 290 57.6
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 7.8e-86 321.6 299 55.2
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.3e-85 320.9 290 56.9
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.3e-85 320.9 290 56.6
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.3e-85 320.9 288 56.6
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.7e-85 320.5 290 55.9
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.7e-85 320.5 290 55.9
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 3.0e-85 319.7 290 56.9
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 3.0e-85 319.7 288 56.6
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 3.0e-85 319.7 290 55.5
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 3.9e-85 319.3 290 57.2
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 6.6e-85 318.5 320 52.8
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 8.6e-85 318.2 289 55.4
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 8.6e-85 318.2 335 49.6
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.1e-84 317.8 290 56.2
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.5e-84 317.4 290 55.9
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.5e-84 317.4 305 55.4
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.9e-84 317.0 288 56.2
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.9e-84 317.0 290 55.9
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 2.5e-84 316.6 290 56.2
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 4.3e-84 315.8 285 57.5
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.3e-84 315.8 290 56.6
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.3e-84 315.8 290 55.5
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.6e-84 315.5 287 57.1
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 9.5e-84 314.7 290 55.5
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.2e-83 314.3 290 55.9
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.2e-83 314.3 305 54.1
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.6e-83 313.9 290 55.5
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.8e-83 313.2 300 53.3
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 3.6e-83 312.8 288 55.6
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 3.6e-83 312.8 288 55.6
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 3.6e-83 312.8 288 55.6
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.7e-83 312.4 277 59.2
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 6.2e-83 312.0 300 53.0
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 8.1e-83 311.6 288 55.6
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.1e-82 311.2 290 54.5
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.1e-82 309.7 292 55.1
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.1e-82 309.7 290 55.2
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 3.1e-82 309.7 323 51.1
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.2e-82 308.9 277 57.8
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 6.8e-82 308.5 275 56.7
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 8.9e-82 308.1 285 56.5
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.5e-81 307.4 278 57.2
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.0e-81 307.0 282 56.0
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 2.6e-81 306.6 317 51.1
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 3.4e-81 306.2 285 55.1
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 3.4e-81 306.2 283 55.8
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 5.8e-81 305.4 286 54.9
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 5.8e-81 305.4 297 54.9
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 5.8e-81 305.4 290 54.1
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 4.9e-80 302.4 286 53.8
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.4e-80 302.0 288 53.1
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.1e-79 301.2 293 52.9
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.4e-79 300.8 287 54.0
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 3.2e-79 299.7 286 53.8
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 5.4e-79 298.9 311 52.1
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 9.2e-79 298.1 287 53.3
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 9.2e-79 298.1 287 53.3
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.2e-78 297.7 291 52.9
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.2e-78 297.7 287 53.7
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.2e-78 297.7 287 53.7
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 2.1e-78 297.0 259 58.7
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.7e-78 296.6 309 52.8
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.5e-78 296.2 299 51.2
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 3.5e-78 296.2 282 54.3
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 7.8e-78 295.0 321 50.2
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 3.9e-77 292.7 288 53.8
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.1e-77 292.4 274 56.6
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 6.6e-77 292.0 274 55.1
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 2.5e-76 290.0 278 53.2
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 3.3e-76 289.7 288 52.1
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 9.6e-76 288.1 323 50.5
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 6.2e-75 285.4 326 46.0
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.6e-73 280.0 260 56.2
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 7.1e-71 271.9 291 50.9
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 2.7e-70 270.0 220 59.5
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 5.6e-68 262.3 328 44.2
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.4e-66 257.7 290 47.6
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 3.1e-66 256.5 250 55.6
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.3e-64 251.1 223 58.3
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.8e-64 249.6 287 46.7
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 4.8e-59 232.6 282 46.1
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 5.3e-58 229.2 290 45.9
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 6.9e-58 228.8 496 31.5
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.5e-57 227.6 194 59.8
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.4e-55 221.1 277 45.1
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.0e-53 214.9 170 62.9
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.7e-53 211.8 193 56.0
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.9e-47 194.1 345 36.5
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 9.3e-47 191.8 179 55.3
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.6e-46 191.0 178 55.1
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 2.3e-45 187.2 226 48.7
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.9e-45 186.4 183 51.9
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.2e-43 180.6 156 59.0
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.2e-43 180.6 155 56.1
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 2.2e-40 170.6 141 59.6
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.2e-32 144.1 133 54.9
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.6e-30 137.9 134 54.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 3.6e-30 136.7 196 40.3
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.0e-28 131.0 257 35.8
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.2e-27 127.5 133 51.9
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.1e-26 125.2 275 32.7
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 7.7e-25 119.0 343 31.5
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 1.7e-24 117.9 116 51.7
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.1e-15 88.6 63 65.1
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.9e-15 87.8 92 50.0
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 5.5e-15 86.3 127 38.6
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 7.0e-10 69.3 57 57.9
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 2.7e-09 67.4 67 46.3
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.5e-09 66.6 56 58.9
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.5e-07 60.8 57 47.4
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.2e-07 60.5 92 40.2


User provided reference genes

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