Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_20390 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.7e-113 412.5 192 100.0
SMO356G0208 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.2e-24 117.5 114 46.5
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 3.4e-24 115.9 167 40.7
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 4.1e-14 82.4 126 42.9
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 1.8e-09 67.0 117 36.8
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 1.2e-08 64.3 113 38.1
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.5e-08 63.9 127 32.3
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 4.4e-08 62.4 110 36.4
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 1.7e-07 60.5 117 31.6
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 2.2e-07 60.1 106 35.8
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 3.7e-07 59.3 104 35.6
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 4.9e-07 58.9 108 38.0
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 6.4e-07 58.5 118 30.5
PGR083G1901 Punica granatum HOM05D003419 ORTHO05D004113 6.4e-07 58.5 91 37.4
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 8.3e-07 58.2 106 37.7
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 1.1e-06 57.8 116 33.6
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 1.1e-06 57.8 110 32.7
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-06 57.8 105 37.1
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 1.1e-06 57.8 114 31.6
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 1.4e-06 57.4 118 28.8
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 1.9e-06 57.0 111 36.0
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.9e-06 57.0 104 33.7
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 1.9e-06 57.0 103 35.0
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 2.4e-06 56.6 115 31.3
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 2.4e-06 56.6 97 34.0
Cc08_g14890 Coffea canephora HOM05D001221 ORTHO05D006671 2.4e-06 56.6 108 34.3
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 3.2e-06 56.2 108 38.9
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 3.2e-06 56.2 105 33.3
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 3.2e-06 56.2 111 32.4
AagrBONN_evm.TU.Sc2ySwM_228.2544 Anthoceros agrestis HOM05D003950 ORTHO05D070902 5.4e-06 55.5 99 34.3
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 5.4e-06 55.5 118 32.2
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 5.4e-06 55.5 97 35.1
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 5.4e-06 55.5 97 33.0
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 5.4e-06 55.5 97 35.1
COL.COLO4_34488 Corchorus olitorius HOM05D001221 ORTHO05D006671 5.4e-06 55.5 95 37.9
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 5.4e-06 55.5 114 28.9
MSTRG.25621 Avicennia marina HOM05D001221 ORTHO05D006671 7.0e-06 55.1 113 35.4
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.0e-06 55.1 97 36.1
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 7.0e-06 55.1 113 31.0
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 7.0e-06 55.1 101 35.6
Manes.02G020701 Manihot esculenta HOM05D001221 ORTHO05D006671 7.0e-06 55.1 94 37.2
QL12p032573 Quercus lobata HOM05D001221 ORTHO05D006671 7.0e-06 55.1 101 37.6
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 7.0e-06 55.1 111 33.3
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 9.2e-06 54.7 112 31.2
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 9.2e-06 54.7 105 38.1
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 9.2e-06 54.7 104 34.6
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 9.2e-06 54.7 115 30.4


User provided reference genes

Program Settings