Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 0.0e+00 1129.8 659 100.0
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 9.3e-175 617.8 713 53.3
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 7.1e-74 282.7 394 40.4
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.4e-66 258.5 291 44.3
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 5.5e-66 256.5 366 38.5
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 1.6e-65 255.0 279 43.4
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 3.0e-64 250.8 404 35.9
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 8.7e-64 249.2 262 46.2
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 3.1e-61 240.7 277 41.9
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 4.1e-61 240.4 294 40.5
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 6.9e-61 239.6 332 40.1
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 6.9e-61 239.6 290 43.1
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.5e-60 238.4 294 40.1
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 5.8e-60 236.5 284 41.5
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 7.6e-60 236.1 292 42.1
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 1.0e-59 235.7 292 42.1
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 1.3e-59 235.3 357 37.0
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.0e-59 233.4 294 39.1
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 1.9e-58 231.5 292 41.8
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 5.5e-58 229.9 592 31.4
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 5.5e-58 229.9 277 40.4
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 7.2e-58 229.6 439 33.3
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 9.3e-58 229.2 277 40.1
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 9.3e-58 229.2 329 37.1
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.2e-57 228.8 278 40.6
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.1e-57 228.0 277 41.2
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 2.1e-57 228.0 277 40.8
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 2.7e-57 227.6 277 39.7
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.7e-57 227.6 277 39.7
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 6.1e-57 226.5 279 39.4
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 1.3e-56 225.3 290 40.0
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.8e-56 224.9 281 39.5
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 2.3e-56 224.6 294 40.8
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.0e-56 224.2 275 40.4
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 3.0e-56 224.2 290 39.7
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 3.9e-56 223.8 290 39.3
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 5.1e-56 223.4 375 34.7
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 6.7e-56 223.0 281 39.1
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 8.7e-56 222.6 275 39.6
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 8.7e-56 222.6 290 39.3
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.1e-55 222.2 342 38.0
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 2.5e-55 221.1 283 40.6
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 2.5e-55 221.1 278 39.9
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 5.7e-55 219.9 330 37.3
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.7e-55 219.9 402 33.6
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 2.2e-54 218.0 401 32.4
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 2.2e-54 218.0 285 40.4
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 2.2e-54 218.0 344 36.9
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 2.8e-54 217.6 409 34.0
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 2.8e-54 217.6 298 37.6
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 2.8e-54 217.6 384 35.7
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 3.7e-54 217.2 298 37.2
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 6.3e-54 216.5 281 39.9
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 6.3e-54 216.5 298 37.6
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 8.2e-54 216.1 373 34.6
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 8.2e-54 216.1 291 38.5
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 8.2e-54 216.1 280 39.6
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 1.1e-53 215.7 282 39.4
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.4e-53 215.3 392 33.4
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.8e-53 214.9 281 39.9
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 2.4e-53 214.5 403 33.5
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 3.1e-53 214.2 281 39.9
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 6.9e-53 213.0 284 38.0
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 1.2e-52 212.2 283 37.5
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 1.2e-52 212.2 307 36.8
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 2.0e-52 211.5 332 35.5
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 2.0e-52 211.5 472 30.9
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 4.5e-52 210.3 290 39.0
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.0e-51 209.1 283 39.2
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.0e-51 209.1 290 39.0
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 2.9e-51 207.6 276 39.1
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 3.8e-51 207.2 404 31.4
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 3.8e-51 207.2 278 36.7
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 6.5e-51 206.5 288 36.8
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 6.5e-51 206.5 280 37.5
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 1.4e-50 205.3 346 34.7
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 1.9e-50 204.9 287 37.3
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 2.5e-50 204.5 278 37.8
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 3.2e-50 204.1 358 34.4
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 4.2e-50 203.8 337 32.3
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 5.5e-50 203.4 280 37.1
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 5.5e-50 203.4 397 32.2
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 5.5e-50 203.4 278 37.1
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 7.2e-50 203.0 278 37.8
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 7.2e-50 203.0 387 31.5
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 7.2e-50 203.0 283 35.7
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 7.2e-50 203.0 330 36.1
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.2e-49 202.2 283 35.7
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 1.6e-49 201.8 328 33.2
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 2.7e-49 201.1 358 33.0
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 3.6e-49 200.7 469 31.8
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 7.9e-49 199.5 472 31.6
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.8e-48 198.4 391 31.2
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.8e-48 198.4 427 32.1
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 3.9e-48 197.2 338 33.4
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 3.9e-48 197.2 351 35.3
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 3.9e-48 197.2 245 40.8
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 5.1e-48 196.8 278 37.4
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 6.7e-48 196.4 413 31.2
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 6.7e-48 196.4 383 32.6
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 2.5e-47 194.5 569 27.9
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 4.3e-47 193.7 454 30.4
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 7.4e-47 193.0 375 33.9
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 1.3e-46 192.2 452 30.3
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 1.3e-46 192.2 345 34.2
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.4e-45 188.7 484 30.0
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 1.8e-45 188.3 290 35.5
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 3.1e-45 187.6 416 31.2
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 4.1e-45 187.2 289 33.9
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 4.1e-45 187.2 273 35.9
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 4.1e-45 187.2 277 35.0
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 6.9e-45 186.4 273 37.4
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 1.5e-44 185.3 333 32.4
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 2.0e-44 184.9 401 32.2
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 2.6e-44 184.5 275 35.6
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 2.6e-44 184.5 269 36.1
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 5.9e-44 183.3 476 28.2
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.2e-41 175.6 248 38.3
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 4.4e-39 167.2 326 31.3
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 2.2e-38 164.9 402 29.9
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 3.7e-38 164.1 207 41.5
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 2.9e-35 154.5 284 32.4
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 3.8e-35 154.1 349 29.2
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 4.2e-34 150.6 312 30.8
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 2.7e-33 147.9 284 30.3
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 4.0e-32 144.1 137 48.2
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.5e-31 142.1 416 28.4
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 7.0e-29 133.3 170 39.4
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 6.5e-27 126.7 253 29.2
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 8.5e-27 126.3 169 38.5
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 4.7e-25 120.6 266 30.5
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 1.8e-24 118.6 281 29.2
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 1.2e-20 105.9 125 41.6
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 3.3e-10 71.2 68 42.6
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.3e-10 71.2 68 42.6
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 3.6e-09 67.8 67 46.3
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 4.4e-07 60.8 175 28.6


User provided reference genes

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