Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_8830 Physcomitrium patens HOM05D005376 ORTHO05D006481 6.8e-138 494.2 290 100.0
Pp3c5_19450 Physcomitrium patens HOM05D005376 ORTHO05D006481 1.1e-66 257.7 302 56.0
Pp3c5_19453 Physcomitrium patens HOM05D005376 ORTHO05D006481 1.1e-66 257.7 302 56.0
Mapoly0083s0037 Marchantia polymorpha HOM05D005376 ORTHO05D006481 4.6e-33 146.0 215 45.6
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 1.1e-29 134.8 149 54.4
BcaC03g14530 Brassica carinata HOM05D005376 ORTHO05D006481 1.8e-29 134.0 193 48.2
BolC2t08101H Brassica oleracea HOM05D005376 ORTHO05D006481 1.8e-29 134.0 194 47.4
Sed0004337 Sechium edule HOM05D005376 ORTHO05D006481 3.1e-29 133.3 172 49.4
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 8.9e-29 131.7 171 46.8
Aqoxy7G00281 Aquilegia oxysepala HOM05D005376 ORTHO05D006481 8.9e-29 131.7 193 45.1
C02p19650 Brassica napus HOM05D005376 ORTHO05D006481 8.9e-29 131.7 182 51.1
A02p11810 Brassica napus HOM05D005376 ORTHO05D006481 3.4e-28 129.8 182 50.5
CARHR265430 Cardamine hirsuta HOM05D005376 ORTHO05D006481 3.4e-28 129.8 167 53.9
Potri.015G147100 Populus trichocarpa HOM05D005376 ORTHO05D006481 5.8e-28 129.0 176 48.9
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 7.6e-28 128.6 197 43.7
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 7.6e-28 128.6 187 43.9
SEGI_07365 Sequoiadendron giganteum HOM05D005376 ORTHO05D006481 7.6e-28 128.6 140 55.7
Thhalv10014513m.g Eutrema salsugineum HOM05D005376 ORTHO05D006481 9.9e-28 128.3 190 47.4
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 1.7e-27 127.5 191 49.2
CiPaw.06G001100 Carya illinoinensis HOM05D005376 ORTHO05D006481 1.7e-27 127.5 152 51.3
BcaB05g21960 Brassica carinata HOM05D005376 ORTHO05D006481 2.2e-27 127.1 180 47.2
Os11g0580800 Oryza sativa ssp. japonica HOM05D005376 ORTHO05D006481 2.2e-27 127.1 139 53.2
THA.LOC104825106 Tarenaya hassleriana HOM05D005376 ORTHO05D006481 2.2e-27 127.1 209 43.5
BcaC01g06187 Brassica carinata HOM05D005376 ORTHO05D006481 2.9e-27 126.7 195 44.1
AT5G52440 Arabidopsis thaliana HOM05D005376 ORTHO05D006481 3.8e-27 126.3 191 50.8
BcaB01g04203 Brassica carinata HOM05D005376 ORTHO05D006481 3.8e-27 126.3 151 50.3
DCAR_009379 Daucus carota HOM05D005376 ORTHO05D006481 3.8e-27 126.3 151 50.3
Duzib084G0056 Durio zibethinus HOM05D005376 ORTHO05D006481 3.8e-27 126.3 199 45.7
Aa31LG3G8830 Aethionema arabicum HOM05D005376 ORTHO05D006481 4.9e-27 125.9 147 54.4
Potri.012G144300 Populus trichocarpa HOM05D005376 ORTHO05D006481 4.9e-27 125.9 203 44.3
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 6.4e-27 125.6 195 44.6
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 6.4e-27 125.6 195 44.6
FAN10G2308 Fragaria x ananassa HOM05D005376 ORTHO05D006481 6.4e-27 125.6 180 46.1
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 6.4e-27 125.6 193 47.7
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 8.4e-27 125.2 192 43.8
Cpa.g.sc107.83 Carica papaya HOM05D005376 ORTHO05D006481 1.1e-26 124.8 220 45.0
BraA03t10859Z Brassica rapa HOM05D005376 ORTHO05D006481 1.4e-26 124.4 181 44.8
Migut.F01097 Erythranthe guttata HOM05D005376 ORTHO05D006481 1.4e-26 124.4 192 44.3
FAN10G0028 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.4e-26 124.4 191 44.0
Sp6g14660 Schrenkiella parvula HOM05D005376 ORTHO05D006481 1.4e-26 124.4 189 52.9
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 1.9e-26 124.0 211 44.1
FAN06G2500 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.9e-26 124.0 266 38.0
FAN06G2733 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.9e-26 124.0 266 38.0
Lsat_1_v5_gn_9_57581 Lactuca sativa HOM05D005376 ORTHO05D006481 1.9e-26 124.0 215 40.9
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 2.4e-26 123.6 190 45.3
Carub.0008s1254 Capsella rubella HOM05D005376 ORTHO05D006481 3.2e-26 123.2 229 44.1
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 3.2e-26 123.2 160 50.6
FAN01G1606 Fragaria x ananassa HOM05D005376 ORTHO05D006481 3.2e-26 123.2 180 45.6
Lj5g0000296 Lotus japonicus HOM05D005376 ORTHO05D006481 3.2e-26 123.2 207 45.4
AUR62031389 Chenopodium quinoa HOM05D005376 ORTHO05D006481 4.1e-26 122.9 187 46.0
CsaV3_3G017320 Cucumis sativus L. HOM05D005376 ORTHO05D006481 4.1e-26 122.9 204 44.1
FAN03G2430 Fragaria x ananassa HOM05D005376 ORTHO05D006481 4.1e-26 122.9 177 45.8
HanXRQChr09g0252451 Helianthus annuus HOM05D005376 ORTHO05D006481 4.1e-26 122.9 79 82.3
Oeu004115.1 Olea europaea HOM05D005376 ORTHO05D006481 4.1e-26 122.9 95 71.6
FvH4_7g29980 Fragaria vesca HOM05D005376 ORTHO05D006481 5.4e-26 122.5 276 37.3
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 5.4e-26 122.5 184 45.7
Glyma.20G161700 Glycine max HOM05D005376 ORTHO05D006481 7.1e-26 122.1 195 43.6
AUR62021148 Chenopodium quinoa HOM05D005376 ORTHO05D006481 9.2e-26 121.7 200 43.5
Lalb_Chr06g0161271 Lupinus albus HOM05D005376 ORTHO05D006481 9.2e-26 121.7 182 46.7
Glyma.10G232400 Glycine max HOM05D005376 ORTHO05D006481 1.2e-25 121.3 195 43.6
Rhsim03G0188900 Rhododendron simsii HOM05D005376 ORTHO05D006481 1.2e-25 121.3 166 46.4
RhsimUnG0027200 Rhododendron simsii HOM05D005376 ORTHO05D006481 1.2e-25 121.3 166 46.4
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 1.2e-25 121.3 90 74.4
A03p15670 Brassica napus HOM05D005376 ORTHO05D006481 1.6e-25 120.9 222 41.9
Nn1g01558 Nelumbo nucifera HOM05D005376 ORTHO05D006481 1.6e-25 120.9 139 58.3
EL10Ac3g05591 Beta vulgaris HOM05D005376 ORTHO05D006481 2.1e-25 120.6 212 42.9
Gohir.D09G043122 Gossypium hirsutum HOM05D005376 ORTHO05D006481 2.1e-25 120.6 214 41.6
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 2.7e-25 120.2 194 43.8
Cc02_g02590 Coffea canephora HOM05D005376 ORTHO05D006481 2.7e-25 120.2 95 70.5
Actinidia34140 Actinidia chinensis HOM05D005376 ORTHO05D006481 3.5e-25 119.8 205 47.8
Dinv35232 Davidia involucrata HOM05D005376 ORTHO05D006481 3.5e-25 119.8 209 42.6
FAN03G2197 Fragaria x ananassa HOM05D005376 ORTHO05D006481 3.5e-25 119.8 180 45.0
MD07G1276100 Malus domestica HOM05D005376 ORTHO05D006481 3.5e-25 119.8 231 45.9
TWI23G0148 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 3.5e-25 119.8 209 41.6
VMungo0720G1970 Vigna mungo HOM05D005376 ORTHO05D006481 3.5e-25 119.8 168 48.8
Duzib205G1046 Durio zibethinus HOM05D005376 ORTHO05D006481 4.6e-25 119.4 186 44.1
Gohir.A09G042000 Gossypium hirsutum HOM05D005376 ORTHO05D006481 4.6e-25 119.4 214 41.1
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 6.0e-25 119.0 193 43.5
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 6.0e-25 119.0 134 52.2
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 7.8e-25 118.6 169 47.9
arahy.Tifrunner.gnm1.ann1.QSSI4A Arachis hypogaea HOM05D005376 ORTHO05D006481 1.0e-24 118.2 88 72.7
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 1.3e-24 117.9 87 73.6
MSTRG.27099 Avicennia marina HOM05D005376 ORTHO05D006481 2.3e-24 117.1 85 77.6
ECA233G3491 Erigeron canadensis HOM05D005376 ORTHO05D006481 2.3e-24 117.1 75 82.7
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 2.3e-24 117.1 103 68.9
MCO14G251 Micromonas commoda HOM05D005376 ORTHO05D006481 3.0e-24 116.7 196 44.4
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 3.0e-24 116.7 103 67.0
Oeu022600.1 Olea europaea HOM05D005376 ORTHO05D006481 5.1e-24 115.9 180 46.1
RcHm_v2.0_Chr1g0377931 Rosa chinensis HOM05D005376 ORTHO05D006481 5.1e-24 115.9 101 66.3
TWI39G0402 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 5.1e-24 115.9 206 42.7
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 6.6e-24 115.5 211 40.8
arahy.Tifrunner.gnm1.ann1.20ERFR Arachis hypogaea HOM05D005376 ORTHO05D006481 8.6e-24 115.2 86 73.3
Lsat_1_v5_gn_8_6901 Lactuca sativa HOM05D005376 ORTHO05D006481 8.6e-24 115.2 72 83.3
Phvul.007G073200 Phaseolus vulgaris HOM05D005376 ORTHO05D006481 1.1e-23 114.8 75 81.3
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 1.1e-23 114.8 177 48.0
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 1.5e-23 114.4 199 43.7
Gorai.006G049600 Gossypium raimondii HOM05D005376 ORTHO05D006481 2.5e-23 113.6 225 39.1
Sabra12G0108300 Salix brachista HOM05D005376 ORTHO05D006481 2.5e-23 113.6 226 39.4
MBI17_g35259_MAGBIO Magnolia biondii HOM05D005376 ORTHO05D006481 4.3e-23 112.8 70 84.3
AagrBONN_evm.TU.Sc2ySwM_117.3925 Anthoceros agrestis HOM05D005376 ORTHO05D006481 1.2e-22 111.3 301 39.2
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 1.2e-22 111.3 75 76.0
Hund04774 Selenicereus undatus HOM05D005376 ORTHO05D006481 1.6e-22 110.9 159 46.5
Prupe.2G298400 Prunus persica HOM05D005376 ORTHO05D006481 2.8e-22 110.2 222 47.3
Manes.06G150900 Manihot esculenta HOM05D005376 ORTHO05D006481 4.7e-22 109.4 162 45.1
Hma1.2p1_0227F.1_g096040 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 6.2e-22 109.0 206 40.8
SMO223G0008 Selaginella moellendorffii HOM05D005376 ORTHO05D006481 6.2e-22 109.0 71 77.5
MELO3C006928.2 Cucumis melo HOM05D005376 ORTHO05D006481 1.8e-21 107.5 216 39.8
Nitab4.5_0001625g0010 Nicotiana tabacum HOM05D005376 ORTHO05D006481 1.8e-21 107.5 120 54.2
Migut.F00319 Erythranthe guttata HOM05D005376 ORTHO05D006481 2.4e-21 107.1 216 42.1
COL.COLO4_28026 Corchorus olitorius HOM05D005376 ORTHO05D006481 3.1e-21 106.7 195 41.0
Haze_00025 Corylus avellana HOM05D005376 ORTHO05D006481 3.1e-21 106.7 196 41.3
GSVIVG01028894001 Vitis vinifera HOM05D005376 ORTHO05D006481 3.1e-21 106.7 207 41.5
Nitab4.5_0000084g0270 Nicotiana tabacum HOM05D005376 ORTHO05D006481 4.0e-21 106.3 192 39.6
CBR_g49097 Chara braunii HOM05D005376 ORTHO05D006481 1.2e-20 104.8 173 43.9
Sc19g0001360 Simmondsia chinensis HOM05D005376 ORTHO05D006481 1.2e-20 104.8 204 40.7
Thecc.03G181600 Theobroma cacao HOM05D005376 ORTHO05D006481 1.3e-19 101.3 200 41.5
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 2.2e-19 100.5 199 39.7
TAR636G3226 Trochodendron aralioides HOM05D005376 ORTHO05D006481 6.4e-19 99.0 191 42.4
ECA232G4406 Erigeron canadensis HOM05D005376 ORTHO05D006481 1.1e-18 98.2 83 67.5
Cre08.g371650 Chlamydomonas reinhardtii HOM05D005376 ORTHO05D006481 5.4e-18 95.9 86 55.8
Solyc03g025310.3 Solanum lycopersicum HOM05D005376 ORTHO05D006481 2.1e-17 94.0 98 58.2
PGSC0003DMG400010161 Solanum tuberosum HOM05D005376 ORTHO05D006481 2.1e-17 94.0 179 39.1
Sopen03g004140 Solanum pennellii HOM05D005376 ORTHO05D006481 2.7e-17 93.6 96 59.4
Psat6g193680 Pisum sativum HOM05D005376 ORTHO05D006481 6.0e-17 92.4 154 42.2
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 7.8e-17 92.0 196 38.3
CAN.G236.14 Capsicum annuum HOM05D005376 ORTHO05D006481 1.3e-16 91.3 206 36.4
Medtr1g100220 Medicago truncatula HOM05D005376 ORTHO05D006481 1.7e-16 90.9 208 37.0
HPP92_028097 Vanilla planifolia HOM05D005376 ORTHO05D006481 2.3e-16 90.5 68 75.0
PRCOL_00002629 Prasinoderma coloniale HOM05D005376 ORTHO05D006481 4.3e-15 86.3 158 48.1
Hund11730 Selenicereus undatus HOM05D005376 ORTHO05D006481 2.1e-14 84.0 74 67.6
Hma1.2p1_0044F.1_g025970 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 5.8e-12 75.9 153 35.3
Lalb_Chr02g0141171 Lupinus albus HOM05D005376 ORTHO05D006481 6.0e-09 65.9 60 60.0
Hma1.2p1_0299F.1_g117880 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 2.3e-08 63.9 116 37.9
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.9e-07 60.8 126 37.3
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 1.9e-07 60.8 125 38.4
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 2.5e-07 60.5 107 41.1
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 2.5e-07 60.5 86 43.0
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 4.3e-07 59.7 95 44.2
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 7.4e-07 58.9 59 50.8
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 7.4e-07 58.9 91 45.1
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 7.4e-07 58.9 110 37.3
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 7.4e-07 58.9 126 35.7
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 9.6e-07 58.5 91 45.1
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 9.6e-07 58.5 107 39.3
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 9.6e-07 58.5 130 38.5
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 1.3e-06 58.2 118 37.3
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 1.3e-06 58.2 123 38.2
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 1.6e-06 57.8 85 43.5
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 1.6e-06 57.8 57 54.4
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 2.1e-06 57.4 74 44.6
Peaxi162Scf00057g10027 Petunia axillaris HOM05D005376 ORTHO05D006481 2.1e-06 57.4 55 52.7
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 2.1e-06 57.4 105 36.2
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 2.8e-06 57.0 85 43.5
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 2.8e-06 57.0 88 39.8
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 2.8e-06 57.0 69 47.8
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 2.8e-06 57.0 101 38.6
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 2.8e-06 57.0 91 39.6
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 2.8e-06 57.0 125 34.4
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 2.8e-06 57.0 106 37.7
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 3.7e-06 56.6 123 34.1
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 3.7e-06 56.6 104 38.5
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 3.7e-06 56.6 88 44.3
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 4.8e-06 56.2 61 50.8
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 4.8e-06 56.2 98 40.8
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 4.8e-06 56.2 57 52.6
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 4.8e-06 56.2 61 47.5
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 6.2e-06 55.8 107 37.4
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 6.2e-06 55.8 104 38.5
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 6.2e-06 55.8 98 39.8
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 8.1e-06 55.5 49 57.1
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 8.1e-06 55.5 76 43.4
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 8.1e-06 55.5 67 46.3
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 8.1e-06 55.5 70 47.1
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 8.1e-06 55.5 101 38.6
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 8.1e-06 55.5 123 33.3
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 8.1e-06 55.5 93 39.8
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 8.1e-06 55.5 93 40.9
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 8.1e-06 55.5 125 34.4


User provided reference genes

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