Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 5.6e-300 1033.5 517 100.0
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 2.8e-158 562.8 532 56.4
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 5.1e-144 515.4 513 51.1
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 7.4e-135 485.0 512 50.0
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 1.1e-133 481.1 510 48.8
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 2.0e-132 476.9 512 49.0
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 2.5e-130 469.9 513 48.0
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 4.2e-130 469.2 525 47.4
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 5.5e-130 468.8 530 48.3
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 6.1e-129 465.3 512 49.4
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 6.1e-129 465.3 513 47.4
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 1.0e-128 464.5 515 47.8
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.4e-128 464.2 517 48.2
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 5.1e-128 462.2 517 48.9
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 8.8e-128 461.5 515 48.0
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 8.8e-128 461.5 519 47.2
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.5e-127 460.7 512 48.8
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 3.3e-127 459.5 512 48.6
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 7.4e-127 458.4 513 48.0
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 9.7e-127 458.0 526 46.6
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 9.7e-127 458.0 509 48.7
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 2.8e-126 456.4 535 47.9
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 4.8e-126 455.7 512 47.5
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 8.2e-126 454.9 511 47.4
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.1e-125 454.5 530 47.5
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 1.1e-125 454.5 530 47.4
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 1.1e-125 454.5 525 47.2
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 1.4e-125 454.1 525 48.0
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 1.8e-125 453.8 502 47.8
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 1.8e-125 453.8 513 48.1
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 3.1e-125 453.0 518 47.5
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 9.1e-125 451.4 530 46.6
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 2.0e-124 450.3 511 47.7
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 2.6e-124 449.9 510 46.5
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 4.5e-124 449.1 525 46.9
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 5.9e-124 448.7 521 47.0
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 5.9e-124 448.7 514 47.7
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 1.0e-123 448.0 531 46.9
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.3e-123 447.6 522 47.5
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 1.7e-123 447.2 508 48.0
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 1.7e-123 447.2 515 47.8
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 3.8e-123 446.0 512 47.5
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 6.5e-123 445.3 513 45.6
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 8.5e-123 444.9 509 46.8
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 1.9e-122 443.7 519 45.1
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 1.9e-122 443.7 512 46.7
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 1.9e-122 443.7 515 46.2
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 3.2e-122 443.0 518 47.5
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 4.2e-122 442.6 526 46.8
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 5.5e-122 442.2 519 45.3
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 5.5e-122 442.2 517 46.2
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 7.2e-122 441.8 532 45.3
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 1.6e-121 440.7 512 46.1
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 1.6e-121 440.7 571 43.3
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 2.1e-121 440.3 505 46.9
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 2.7e-121 439.9 521 46.8
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 2.7e-121 439.9 510 46.5
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 2.7e-121 439.9 526 45.8
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 3.6e-121 439.5 514 45.7
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 8.0e-121 438.3 521 46.6
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 3.0e-120 436.4 508 45.9
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 3.9e-120 436.0 522 45.6
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 3.9e-120 436.0 514 45.9
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 3.9e-120 436.0 533 46.5
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 5.2e-120 435.6 518 46.7
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 5.2e-120 435.6 514 46.1
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 6.7e-120 435.3 518 46.7
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 1.5e-119 434.1 476 47.5
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 1.5e-119 434.1 512 46.1
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 2.0e-119 433.7 518 47.5
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 2.0e-119 433.7 515 45.2
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 4.4e-119 432.6 525 45.7
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 5.7e-119 432.2 531 44.8
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 9.7e-119 431.4 513 47.2
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 1.3e-118 431.0 521 46.8
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 1.7e-118 430.6 541 45.3
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 2.2e-118 430.3 518 46.3
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 3.7e-118 429.5 537 44.7
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 4.8e-118 429.1 537 45.8
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 1.1e-117 427.9 508 47.2
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 1.1e-117 427.9 512 46.1
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 4.1e-117 426.0 561 43.1
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 4.1e-117 426.0 517 44.9
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 4.1e-117 426.0 528 45.8
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 5.3e-117 425.6 535 44.5
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 5.9e-116 422.2 536 45.0
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 5.9e-116 422.2 532 44.4
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.0e-115 421.4 531 45.0
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 1.3e-115 421.0 516 44.6
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 1.7e-115 420.6 518 42.9
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 3.8e-115 419.5 523 45.1
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 7.2e-114 415.2 531 44.6
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 3.6e-113 412.9 518 44.6
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 4.7e-113 412.5 531 44.3
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 6.1e-113 412.1 531 44.4
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.0e-112 411.4 531 44.6
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 5.2e-112 409.1 538 42.0
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 4.4e-111 406.0 516 44.4
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 2.8e-110 403.3 519 44.9
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 2.8e-110 403.3 494 47.0
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 1.4e-109 401.0 503 44.5
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 4.1e-109 399.4 550 41.3
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 5.3e-109 399.1 503 44.1
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 1.0e-107 394.8 480 46.2
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 3.2e-106 389.8 515 43.1
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 1.5e-103 380.9 531 41.4
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 2.4e-101 373.6 437 47.6
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 2.4e-101 373.6 513 43.7
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 4.5e-100 369.4 503 41.6
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 3.6e-97 359.8 467 43.7
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.0e-96 358.2 442 46.2
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 7.5e-95 352.1 448 43.1
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 2.2e-94 350.5 509 39.9
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 1.2e-76 291.6 406 39.4
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 1.4e-72 278.1 361 44.0
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 6.8e-72 275.8 460 38.5
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 8.3e-70 268.9 384 42.4
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 2.7e-52 210.7 479 34.4
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 1.1e-32 145.6 133 53.4
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-28 132.1 147 45.6
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 9.0e-24 115.9 442 27.1
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 1.1e-21 109.0 128 43.8
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 4.3e-18 97.1 136 44.1
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 1.4e-16 92.0 263 27.8
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 9.1e-16 89.4 80 50.0
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 7.2e-13 79.7 133 38.3
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 6.1e-12 76.6 159 34.6
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 6.1e-12 76.6 53 58.5
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 3.9e-11 73.9 80 41.2
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 3.9e-11 73.9 73 49.3
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 2.6e-10 71.2 76 46.1
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 6.3e-09 66.6 63 49.2
MCO11G935 Micromonas commoda HOM05D005650 ORTHO05D007020 2.6e-07 61.2 198 26.8


User provided reference genes

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