Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_7670 Physcomitrium patens HOM05D002031 ORTHO05D319479 1.5e-20 101.7 44 100.0
Pp3c1_24000 Physcomitrium patens HOM05D002031 ORTHO05D002143 2.0e-09 64.7 31 87.1
SalBow7G1750 Salvia bowleyana HOM05D002031 ORTHO05D002143 3.8e-08 60.5 31 80.6
SalBow8G4653 Salvia bowleyana HOM05D002031 ORTHO05D002143 3.8e-08 60.5 31 80.6
Migut.M00670 Erythranthe guttata HOM05D002031 ORTHO05D002143 5.0e-08 60.1 31 80.6
Atru.chr2.1845 Acer truncatum HOM05D002031 ORTHO05D002143 6.5e-08 59.7 31 80.6
MD05G1213700 Malus domestica HOM05D002031 ORTHO05D002143 6.5e-08 59.7 31 80.6
Medtr2g064840 Medicago truncatula HOM05D002031 ORTHO05D002143 6.5e-08 59.7 31 80.6
Prupe.4G144300 Prunus persica HOM05D002031 ORTHO05D002143 6.5e-08 59.7 31 80.6
SalBow7G1447 Salvia bowleyana HOM05D002031 ORTHO05D002143 6.5e-08 59.7 31 80.6
SalBow7G2823 Salvia bowleyana HOM05D002031 ORTHO05D002143 6.5e-08 59.7 31 80.6
Sed0013452 Sechium edule HOM05D002031 ORTHO05D002143 6.5e-08 59.7 31 80.6
TPR.G27161 Trifolium pratense HOM05D002031 ORTHO05D002143 6.5e-08 59.7 31 80.6
Ah.04g163360 Amaranthus hybridus HOM05D002031 ORTHO05D002143 8.5e-08 59.3 31 80.6
Sopen07g029370 Solanum pennellii HOM05D002031 ORTHO05D002143 8.5e-08 59.3 31 77.4
CBR_g39246 Chara braunii HOM05D002031 ORTHO05D002143 1.1e-07 58.9 31 77.4
Migut.H02058 Erythranthe guttata HOM05D002031 ORTHO05D002143 1.1e-07 58.9 31 77.4
MSTRG.12855 Avicennia marina HOM05D002031 ORTHO05D002143 1.5e-07 58.5 31 74.2
MSTRG.14998 Avicennia marina HOM05D002031 ORTHO05D002143 1.5e-07 58.5 31 77.4
CANSAT56G3161 Cannabis sativa HOM05D002031 ORTHO05D002143 1.5e-07 58.5 31 77.4
unitig_747.g21595 Utricularia gibba HOM05D002031 ORTHO05D002143 1.5e-07 58.5 31 80.6
CAN.G585.3 Capsicum annuum HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 74.2
Ciclev10018663m.g Citrus clementina HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
DCAR_017559 Daucus carota HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Dinv21344 Davidia involucrata HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Dinv26637 Davidia involucrata HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Duzib213G0092 Durio zibethinus HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
FvH4_3g16100 Fragaria vesca HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
FAN11G0136 Fragaria x ananassa HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
FAN16G0016 Fragaria x ananassa HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
FAN21G3742 Fragaria x ananassa HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Glyma.08G174200 Glycine max HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Glyma.15G253000 Glycine max HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Lj3g0011562 Lotus japonicus HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Nitab4.5_0001612g0100 Nicotiana tabacum HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Nitab4.5_0004166g0050 Nicotiana tabacum HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Potri.001G436300 Populus trichocarpa HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Potri.011G140100 Populus trichocarpa HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
RcHm_v2.0_Chr5g0027081 Rosa chinensis HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Sabra11G0126200 Salix brachista HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Sabra16G0290500 Salix brachista HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Sabra16G0291600 Salix brachista HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
Solyc07g056020.3 Solanum lycopersicum HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 74.2
PGSC0003DMG400031088 Solanum tuberosum HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 74.2
Thecc.07G159700 Theobroma cacao HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
TWI38G0855 Tripterygium wilfordii HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
TAR624G1050 Trochodendron aralioides HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
GSVIVG01020495001 Vitis vinifera HOM05D002031 ORTHO05D002143 1.9e-07 58.2 31 77.4
COL.COLO4_38376 Corchorus olitorius HOM05D002031 ORTHO05D002143 2.5e-07 57.8 31 77.4
FAN25G2027 Fragaria x ananassa HOM05D002031 ORTHO05D002143 2.5e-07 57.8 31 74.2
Lalb_Chr01g0015981 Lupinus albus HOM05D002031 ORTHO05D002143 2.5e-07 57.8 31 77.4
Lalb_Chr25g0285241 Lupinus albus HOM05D002031 ORTHO05D002143 2.5e-07 57.8 31 77.4
Nn4g26631 Nelumbo nucifera HOM05D002031 ORTHO05D002143 2.5e-07 57.8 31 77.4
Hund02299 Selenicereus undatus HOM05D002031 ORTHO05D002143 2.5e-07 57.8 31 77.4
MD12G1000300 Malus domestica HOM05D002031 ORTHO05D002143 3.2e-07 57.4 31 77.4
Oeu012709.1 Olea europaea HOM05D002031 ORTHO05D002143 3.2e-07 57.4 31 77.4
Sc16g0003460 Simmondsia chinensis HOM05D002031 ORTHO05D002143 3.2e-07 57.4 31 74.2
vmacro12030 Vaccinium macrocarpon HOM05D002031 ORTHO05D002143 3.2e-07 57.4 31 74.2
arahy.Tifrunner.gnm1.ann1.HGAE8N Arachis hypogaea HOM05D002031 ORTHO05D002143 4.2e-07 57.0 30 80.0
arahy.Tifrunner.gnm1.ann1.PV2JBQ Arachis hypogaea HOM05D002031 ORTHO05D002143 4.2e-07 57.0 30 80.0
CSS0015742 Camellia sinensis var. sinensis HOM05D002031 ORTHO05D002143 4.2e-07 57.0 33 72.7
CSS0037066 Camellia sinensis var. sinensis HOM05D002031 ORTHO05D002143 4.2e-07 57.0 31 74.2
CSS0037709 Camellia sinensis var. sinensis HOM05D002031 ORTHO05D002143 4.2e-07 57.0 31 74.2
Ca_03484_v3 Cicer arietinum L. HOM05D002031 ORTHO05D002143 4.2e-07 57.0 31 74.2
Cc05_g10020 Coffea canephora HOM05D002031 ORTHO05D002143 4.2e-07 57.0 31 77.4
Haze_08514 Corylus avellana HOM05D002031 ORTHO05D002143 4.2e-07 57.0 30 80.0
Manes.03G090800 Manihot esculenta HOM05D002031 ORTHO05D002143 4.2e-07 57.0 31 74.2
Manes.15G101300 Manihot esculenta HOM05D002031 ORTHO05D002143 4.2e-07 57.0 31 74.2
PGR031G0914 Punica granatum HOM05D002031 ORTHO05D002143 4.2e-07 57.0 31 74.2
Rhsim04G0032300 Rhododendron simsii HOM05D002031 ORTHO05D002143 4.2e-07 57.0 31 74.2
vmacro09449 Vaccinium macrocarpon HOM05D002031 ORTHO05D002143 4.2e-07 57.0 31 74.2
ATR1098G041 Amborella trichopoda HOM05D002031 ORTHO05D002143 5.5e-07 56.6 31 74.2
Cfa019443 Carpinus fangiana HOM05D002031 ORTHO05D002143 5.5e-07 56.6 31 74.2
CiPaw.12G007300 Carya illinoinensis HOM05D002031 ORTHO05D002143 5.5e-07 56.6 31 74.2
CsaV3_4G037980 Cucumis sativus L. HOM05D002031 ORTHO05D002143 5.5e-07 56.6 31 77.4
Gohir.D01G079500 Gossypium hirsutum HOM05D002031 ORTHO05D002143 5.5e-07 56.6 31 77.4
Gorai.002G104300 Gossypium raimondii HOM05D002031 ORTHO05D002143 5.5e-07 56.6 31 77.4
Peaxi162Scf00111g00527 Petunia axillaris HOM05D002031 ORTHO05D002143 5.5e-07 56.6 31 74.2
SEGI_17195 Sequoiadendron giganteum HOM05D002031 ORTHO05D002143 5.5e-07 56.6 31 74.2
AL1G29460 Arabidopsis lyrata HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
AT1G17220 Arabidopsis thaliana HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
EL10Ac4g08531 Beta vulgaris HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 77.4
BcaB03g13012 Brassica carinata HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
BcaB07g34040 Brassica carinata HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
BcaC05g25655 Brassica carinata HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
BcaC07g38837 Brassica carinata HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
A06p13140 Brassica napus HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
A08p31030 Brassica napus HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
C08p17770 Brassica napus HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
BolC8t49403H Brassica oleracea HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
BraA06t24472Z Brassica rapa HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
BraA08t35032Z Brassica rapa HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
Carub.0001s1697 Capsella rubella HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
Cpa.g.sc229.4 Carica papaya HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
Eucgr.F01437 Eucalyptus grandis HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
Thhalv10006681m.g Eutrema salsugineum HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
MBI02_g12197_MAGBIO Magnolia biondii HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
PSO541G0296 Papaver somniferum HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
PSO675G7806 Papaver somniferum HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
Sp1g15360 Schrenkiella parvula HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 74.2
SGA_v2.0_scaffold73G24366 Striga asiatica HOM05D002031 ORTHO05D002143 7.2e-07 56.2 31 77.4
Actinidia35185 Actinidia chinensis HOM05D002031 ORTHO05D002143 9.4e-07 55.8 31 74.2
Aqoxy1G01663 Aquilegia oxysepala HOM05D002031 ORTHO05D002143 9.4e-07 55.8 31 74.2
ClCG11G016260 Citrullus lanatus HOM05D002031 ORTHO05D002143 9.4e-07 55.8 30 80.0
MELO3C010552.2 Cucumis melo HOM05D002031 ORTHO05D002143 9.4e-07 55.8 30 80.0
DCAR_013807 Daucus carota HOM05D002031 ORTHO05D002143 9.4e-07 55.8 31 71.0
Gohir.A01G095300 Gossypium hirsutum HOM05D002031 ORTHO05D002143 9.4e-07 55.8 31 74.2
Phvul.005G054600 Phaseolus vulgaris HOM05D002031 ORTHO05D002143 9.4e-07 55.8 31 74.2
THA.LOC104812285 Tarenaya hassleriana HOM05D002031 ORTHO05D002143 9.4e-07 55.8 33 69.7
AUR62041255 Chenopodium quinoa HOM05D002031 ORTHO05D002143 1.2e-06 55.5 31 74.2
AUR62041928 Chenopodium quinoa HOM05D002031 ORTHO05D002143 1.2e-06 55.5 31 74.2
Rhsim06G0183300 Rhododendron simsii HOM05D002031 ORTHO05D002143 1.2e-06 55.5 31 71.0
HPP92_011058 Vanilla planifolia HOM05D002031 ORTHO05D002143 1.2e-06 55.5 31 71.0
Aa31LG4G2620 Aethionema arabicum HOM05D002031 ORTHO05D002143 1.6e-06 55.1 31 71.0
TAR636G1001 Trochodendron aralioides HOM05D002031 ORTHO05D002143 1.6e-06 55.1 31 74.2
Aa31LG7G2030 Aethionema arabicum HOM05D002031 ORTHO05D002143 2.1e-06 54.7 31 71.0
C05p15640 Brassica napus HOM05D002031 ORTHO05D002143 2.1e-06 54.7 31 71.0
BolC5t30271H Brassica oleracea HOM05D002031 ORTHO05D002143 2.1e-06 54.7 31 71.0
CARHR017800 Cardamine hirsuta HOM05D002031 ORTHO05D002143 2.1e-06 54.7 31 71.0
Lj1A805T79 Lonicera japonica HOM05D002031 ORTHO05D002143 2.1e-06 54.7 31 74.2
Psat1g009920 Pisum sativum HOM05D002031 ORTHO05D002143 2.1e-06 54.7 31 74.2
Actinidia12334 Actinidia chinensis HOM05D002031 ORTHO05D002143 2.7e-06 54.3 31 74.2
TWI38G0655 Tripterygium wilfordii HOM05D002031 ORTHO05D002143 2.7e-06 54.3 31 74.2
VMungo1080G0437 Vigna mungo HOM05D002031 ORTHO05D002143 2.7e-06 54.3 31 71.0
CDE03G0137 Ceratophyllum demersum HOM05D002031 ORTHO05D002143 3.6e-06 53.9 31 74.2
CDE06G2115 Ceratophyllum demersum HOM05D002031 ORTHO05D002143 3.6e-06 53.9 31 74.2
Sabra19G0135800 Salix brachista HOM05D002031 ORTHO05D002143 4.7e-06 53.5 31 71.0
Actinidia20593 Actinidia chinensis HOM05D002031 ORTHO05D002143 6.1e-06 53.1 31 71.0
Nn3g20354 Nelumbo nucifera HOM05D002031 ORTHO05D002143 8.0e-06 52.8 31 71.0


User provided reference genes

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