Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.9e-119 432.6 224 100.0
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.1e-108 396.7 225 90.7
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.1e-102 375.9 226 87.6
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 3.5e-81 305.4 227 70.0
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 1.2e-76 290.4 223 69.1
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 3.5e-73 278.9 172 76.7
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 7.8e-73 277.7 162 83.3
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 7.8e-73 277.7 162 83.3
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 7.8e-73 277.7 162 83.3
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 1.3e-72 276.9 172 79.1
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 1.3e-72 276.9 187 71.1
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.7e-72 276.6 162 82.7
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 3.0e-72 275.8 172 78.5
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 3.0e-72 275.8 172 78.5
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 3.0e-72 275.8 172 78.5
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 3.0e-72 275.8 172 78.5
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 3.0e-72 275.8 172 78.5
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 3.0e-72 275.8 186 74.7
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.0e-72 275.8 162 82.7
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 3.0e-72 275.8 172 77.3
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 3.0e-72 275.8 172 78.5
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 3.9e-72 275.4 172 77.9
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 3.9e-72 275.4 211 65.9
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 3.9e-72 275.4 180 74.4
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 5.0e-72 275.0 164 80.5
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 5.0e-72 275.0 211 65.9
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 5.0e-72 275.0 224 66.5
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 5.0e-72 275.0 162 82.1
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 6.6e-72 274.6 172 77.9
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 6.6e-72 274.6 172 77.9
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 6.6e-72 274.6 172 77.9
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.6e-72 274.6 172 76.7
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.6e-72 274.6 172 76.7
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 6.6e-72 274.6 172 76.7
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 8.6e-72 274.2 184 72.8
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 8.6e-72 274.2 226 65.5
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.1e-71 273.9 226 65.5
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.1e-71 273.9 203 68.5
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.1e-71 273.9 172 77.9
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 1.1e-71 273.9 193 70.5
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 1.1e-71 273.9 172 78.5
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 1.1e-71 273.9 185 72.4
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.5e-71 273.5 172 77.9
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 1.5e-71 273.5 172 77.9
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 1.5e-71 273.5 194 71.1
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 1.9e-71 273.1 172 77.9
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 2.5e-71 272.7 172 75.6
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 2.5e-71 272.7 172 77.9
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 2.5e-71 272.7 224 64.7
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 3.3e-71 272.3 181 74.6
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 3.3e-71 272.3 172 76.7
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 3.3e-71 272.3 172 77.9
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 3.3e-71 272.3 172 76.2
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 4.3e-71 271.9 172 76.2
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 4.3e-71 271.9 172 76.7
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 4.3e-71 271.9 172 76.7
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 4.3e-71 271.9 172 77.3
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 4.3e-71 271.9 172 75.6
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 5.6e-71 271.6 172 76.7
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.6e-71 271.6 172 76.2
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 7.3e-71 271.2 224 66.5
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 7.3e-71 271.2 172 77.3
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 7.3e-71 271.2 172 74.4
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 9.5e-71 270.8 203 70.0
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 9.5e-71 270.8 224 65.2
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 9.5e-71 270.8 170 75.3
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 1.2e-70 270.4 172 76.7
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.2e-70 270.4 207 66.7
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 1.2e-70 270.4 162 80.9
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 1.6e-70 270.0 185 71.4
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.6e-70 270.0 161 80.7
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 1.6e-70 270.0 203 68.5
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 2.1e-70 269.6 184 72.3
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 2.1e-70 269.6 172 75.6
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 2.1e-70 269.6 172 73.3
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 2.1e-70 269.6 172 76.2
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 2.1e-70 269.6 224 65.2
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 2.8e-70 269.2 162 79.6
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 2.8e-70 269.2 185 70.8
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 2.8e-70 269.2 172 74.4
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 2.8e-70 269.2 171 75.4
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.8e-70 269.2 201 65.7
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 3.6e-70 268.9 226 64.2
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 3.6e-70 268.9 172 76.2
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 3.6e-70 268.9 224 65.6
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 3.6e-70 268.9 172 75.6
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 3.6e-70 268.9 188 69.7
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 4.7e-70 268.5 224 64.7
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 4.7e-70 268.5 172 75.6
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 4.7e-70 268.5 172 76.2
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 4.7e-70 268.5 203 66.5
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 4.7e-70 268.5 224 65.2
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 6.2e-70 268.1 179 73.2
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 6.2e-70 268.1 224 64.7
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 6.2e-70 268.1 172 75.6
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 6.2e-70 268.1 180 71.1
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 6.2e-70 268.1 180 72.8
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 8.1e-70 267.7 172 75.0
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 8.1e-70 267.7 203 67.0
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 8.1e-70 267.7 203 67.0
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 8.1e-70 267.7 226 62.8
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 8.1e-70 267.7 180 72.8
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 8.1e-70 267.7 224 64.3
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 8.1e-70 267.7 162 77.2
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 1.1e-69 267.3 201 68.2
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 1.4e-69 266.9 180 71.7
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.4e-69 266.9 224 64.7
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 1.8e-69 266.5 172 73.8
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.8e-69 266.5 172 73.8
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.8e-69 266.5 172 73.8
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 1.8e-69 266.5 224 64.3
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 1.8e-69 266.5 172 75.0
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 5.2e-69 265.0 172 73.3
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 5.2e-69 265.0 175 72.6
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 5.2e-69 265.0 224 62.9
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 5.2e-69 265.0 172 73.8
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 5.2e-69 265.0 203 66.5
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 6.8e-69 264.6 172 72.7
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 8.9e-69 264.2 185 69.7
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 1.2e-68 263.8 172 75.0
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 1.2e-68 263.8 172 73.3
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 1.5e-68 263.5 222 63.1
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 2.0e-68 263.1 181 70.2
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 2.6e-68 262.7 172 72.1
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 3.4e-68 262.3 181 72.9
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 3.4e-68 262.3 224 62.9
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 4.4e-68 261.9 172 74.4
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 1.3e-67 260.4 202 66.3
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 2.2e-67 259.6 184 70.1
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 1.4e-66 256.9 170 74.1
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.2e-62 243.8 162 74.7
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.2e-60 237.3 195 62.1
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 1.3e-56 223.8 228 56.6
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 1.0e-48 197.6 221 52.9
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 2.6e-44 183.0 192 55.2
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 2.9e-43 179.5 155 58.7
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 4.6e-41 172.2 224 50.0
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.5e-39 166.4 224 45.1
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 6.9e-37 158.3 127 63.8
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 1.5e-31 140.6 87 79.3
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.2e-27 126.7 144 54.9
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 5.3e-13 79.0 97 46.4
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.4e-12 76.3 56 66.1
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 3.4e-12 76.3 56 66.1


User provided reference genes

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