Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_20170 Physcomitrium patens HOM05D000368 ORTHO05D009348 3.8e-113 412.1 319 100.0
AagrBONN_evm.TU.Sc2ySwM_117.528 Anthoceros agrestis HOM05D000368 ORTHO05D009348 5.6e-16 89.4 304 50.7
Mapoly0006s0064 Marchantia polymorpha HOM05D000368 ORTHO05D009348 6.2e-15 85.9 310 48.4
SEGI_15321 Sequoiadendron giganteum HOM05D000368 ORTHO05D009348 1.8e-14 84.3 195 70.3
RcHm_v2.0_Chr1g0377401 Rosa chinensis HOM05D000368 ORTHO05D009348 1.3e-12 78.2 121 41.3
CARHR265330 Cardamine hirsuta HOM05D000368 ORTHO05D009348 1.1e-11 75.1 57 63.2
C03p18350 Brassica napus HOM05D000368 ORTHO05D000289 1.9e-11 74.3 47 68.1
FAN01G1188 Fragaria x ananassa HOM05D000368 ORTHO05D009348 2.4e-11 73.9 121 43.8
BolC3t14232H Brassica oleracea HOM05D000368 ORTHO05D000289 4.1e-11 73.2 44 70.5
Carub.0008s1248 Capsella rubella HOM05D000368 ORTHO05D009348 4.1e-11 73.2 54 61.1
GSVIVG01028962001 Vitis vinifera HOM05D000368 ORTHO05D009348 5.4e-11 72.8 52 61.5
AL8G26780 Arabidopsis lyrata HOM05D000368 ORTHO05D009348 9.2e-11 72.0 54 59.3
Dinv35216 Davidia involucrata HOM05D000368 ORTHO05D000289 9.2e-11 72.0 52 53.8
FvH4_7g29542 Fragaria vesca HOM05D000368 ORTHO05D009348 9.2e-11 72.0 121 43.8
FAN06G0492 Fragaria x ananassa HOM05D000368 ORTHO05D009348 9.2e-11 72.0 121 43.8
FAN06G1486 Fragaria x ananassa HOM05D000368 ORTHO05D009348 9.2e-11 72.0 121 43.8
Sp6g14600 Schrenkiella parvula HOM05D000368 ORTHO05D000289 1.2e-10 71.6 57 59.6
Dinv24555 Davidia involucrata HOM05D000368 ORTHO05D009348 2.1e-10 70.9 41 65.9
PGR142G2510 Punica granatum HOM05D000368 ORTHO05D009348 2.1e-10 70.9 53 60.4
ATR0680G368 Amborella trichopoda HOM05D000368 ORTHO05D009348 2.7e-10 70.5 110 70.0
MSTRG.8734 Avicennia marina HOM05D000368 ORTHO05D009348 2.7e-10 70.5 48 62.5
A03p15700 Brassica napus HOM05D000368 ORTHO05D000289 2.7e-10 70.5 43 67.4
Thecc.03G177600 Theobroma cacao HOM05D000368 ORTHO05D009348 1.0e-09 68.6 41 65.9
AT5G52380 Arabidopsis thaliana HOM05D000368 ORTHO05D009348 1.3e-09 68.2 121 38.0
Aqoxy5G04003 Aquilegia oxysepala HOM05D000368 ORTHO05D009348 1.7e-09 67.8 42 66.7
C09p41730 Brassica napus HOM05D000368 ORTHO05D000289 1.7e-09 67.8 48 62.5
BolC9t57061H Brassica oleracea HOM05D000368 ORTHO05D009348 1.7e-09 67.8 48 62.5
CSS0028945 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 1.7e-09 67.8 50 60.0
Thhalv10014379m.g Eutrema salsugineum HOM05D000368 ORTHO05D009348 1.7e-09 67.8 54 55.6
Prupe.2G295100 Prunus persica HOM05D000368 ORTHO05D009348 2.3e-09 67.4 121 38.0
SGA_v2.0_scaffold44G16725 Striga asiatica HOM05D000368 ORTHO05D009348 3.0e-09 67.0 42 66.7
BraA03t10861Z Brassica rapa HOM05D000368 ORTHO05D000289 3.9e-09 66.6 41 68.3
CSS0042203 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 3.9e-09 66.6 70 48.6
THA.LOC104811975 Tarenaya hassleriana HOM05D000368 ORTHO05D009348 3.9e-09 66.6 65 50.8
Actinidia31822 Actinidia chinensis HOM05D000368 ORTHO05D009348 5.1e-09 66.2 51 54.9
Dinv28433 Davidia involucrata HOM05D000368 ORTHO05D009348 6.6e-09 65.9 39 64.1
Atru.BG.181.p Acer truncatum HOM05D000368 ORTHO05D009348 8.6e-09 65.5 47 57.4
Atru.chr1.452 Acer truncatum HOM05D000368 ORTHO05D009348 8.6e-09 65.5 47 57.4
arahy.Tifrunner.gnm1.ann1.C4Z81U Arachis hypogaea HOM05D000368 ORTHO05D009348 8.6e-09 65.5 66 48.5
arahy.Tifrunner.gnm1.ann1.HM7G91 Arachis hypogaea HOM05D000368 ORTHO05D009348 8.6e-09 65.5 66 48.5
Migut.F00336 Erythranthe guttata HOM05D000368 ORTHO05D009348 8.6e-09 65.5 41 63.4
FAN10G1519 Fragaria x ananassa HOM05D000368 ORTHO05D009348 8.6e-09 65.5 121 38.8
FAN10G1532 Fragaria x ananassa HOM05D000368 ORTHO05D009348 8.6e-09 65.5 121 38.8
Hma1.2p1_0270F.1_g107970 Hydrangea macrophylla HOM05D000368 ORTHO05D009348 8.6e-09 65.5 43 58.1
CiPaw.04G071400 Carya illinoinensis HOM05D000368 ORTHO05D009348 1.1e-08 65.1 39 66.7
Cpa.g.sc107.59 Carica papaya HOM05D000368 ORTHO05D009348 1.5e-08 64.7 49 57.1
Nn1g01474 Nelumbo nucifera HOM05D000368 ORTHO05D009348 1.5e-08 64.7 119 37.0
Phvul.007G070700 Phaseolus vulgaris HOM05D000368 ORTHO05D009348 1.5e-08 64.7 47 55.3
QL09p014019 Quercus lobata HOM05D000368 ORTHO05D009348 1.5e-08 64.7 49 53.1
Manes.14G025600 Manihot esculenta HOM05D000368 ORTHO05D009348 1.9e-08 64.3 39 66.7
Potri.012G141700 Populus trichocarpa HOM05D000368 ORTHO05D009348 1.9e-08 64.3 39 66.7
Sabra15G0154200 Salix brachista HOM05D000368 ORTHO05D009348 1.9e-08 64.3 49 53.1
ClCG05G008070 Citrullus lanatus HOM05D000368 ORTHO05D009348 2.5e-08 63.9 49 55.1
Duzib205G0377 Durio zibethinus HOM05D000368 ORTHO05D000289 2.5e-08 63.9 41 58.5
HanXRQChr07g0207001 Helianthus annuus HOM05D000368 ORTHO05D009348 3.3e-08 63.5 45 55.6
Lsat_1_v5_gn_2_132381 Lactuca sativa HOM05D000368 ORTHO05D009348 4.3e-08 63.2 49 49.0
CANSAT21G1838 Cannabis sativa HOM05D000368 ORTHO05D009348 5.6e-08 62.8 39 64.1
MBI17_g19093_MAGBIO Magnolia biondii HOM05D000368 ORTHO05D009348 5.6e-08 62.8 40 60.0
Nitab4.5_0002117g0050 Nicotiana tabacum HOM05D000368 ORTHO05D009348 5.6e-08 62.8 40 62.5
Sed0010584 Sechium edule HOM05D000368 ORTHO05D009348 5.6e-08 62.8 39 61.5
Cfa008323 Carpinus fangiana HOM05D000368 ORTHO05D009348 7.3e-08 62.4 49 55.1
Haze_13700 Corylus avellana HOM05D000368 ORTHO05D009348 7.3e-08 62.4 49 55.1
Lj5g0009535 Lotus japonicus HOM05D000368 ORTHO05D009348 7.3e-08 62.4 43 58.1
PGSC0003DMG402014344 Solanum tuberosum HOM05D000368 ORTHO05D009348 7.3e-08 62.4 42 59.5
Zm00001eb074410 Zea mays HOM05D000368 ORTHO05D009348 7.3e-08 62.4 120 37.5
MELO3C006911.2 Cucumis melo HOM05D000368 ORTHO05D009348 9.6e-08 62.0 61 47.5
ECA238G2658 Erigeron canadensis HOM05D000368 ORTHO05D000289 9.6e-08 62.0 52 50.0
Solyc03g025740.4 Solanum lycopersicum HOM05D000368 ORTHO05D009348 9.6e-08 62.0 54 53.7
Sopen03g004560 Solanum pennellii HOM05D000368 ORTHO05D009348 9.6e-08 62.0 54 53.7
CsaV3_3G017130 Cucumis sativus L. HOM05D000368 ORTHO05D009348 1.2e-07 61.6 49 53.1
DCAR_020244 Daucus carota HOM05D000368 ORTHO05D009348 1.2e-07 61.6 121 33.1
Glyma.20G159100 Glycine max HOM05D000368 ORTHO05D009348 1.2e-07 61.6 42 59.5
TWI39G0209 Tripterygium wilfordii HOM05D000368 ORTHO05D009348 1.2e-07 61.6 49 53.1
vmacro09836 Vaccinium macrocarpon HOM05D000368 ORTHO05D000289 1.2e-07 61.6 119 36.1
Lalb_Chr21g0305051 Lupinus albus HOM05D000368 ORTHO05D009348 1.6e-07 61.2 119 36.1
Cc02_g02880 Coffea canephora HOM05D000368 ORTHO05D009348 2.1e-07 60.8 121 37.2
MD01G1201700 Malus domestica HOM05D000368 ORTHO05D009348 2.1e-07 60.8 251 51.0
Psat0s3135g0040 Pisum sativum HOM05D000368 ORTHO05D009348 2.1e-07 60.8 43 58.1
VMungo0720G3173 Vigna mungo HOM05D000368 ORTHO05D009348 2.1e-07 60.8 121 33.9
Hund11743 Selenicereus undatus HOM05D000368 ORTHO05D009348 2.8e-07 60.5 61 47.5
Sc19g0001470 Simmondsia chinensis HOM05D000368 ORTHO05D009348 2.8e-07 60.5 57 49.1
TAR629G3168 Trochodendron aralioides HOM05D000368 ORTHO05D009348 3.6e-07 60.1 119 35.3
Ca_10757_v3 Cicer arietinum L. HOM05D000368 ORTHO05D009348 4.7e-07 59.7 43 58.1
MD07G1269700 Malus domestica HOM05D000368 ORTHO05D009348 4.7e-07 59.7 121 34.7
Os04g0555800 Oryza sativa ssp. japonica HOM05D000368 ORTHO05D009348 4.7e-07 59.7 43 58.1
Potri.015G144600 Populus trichocarpa HOM05D000368 ORTHO05D009348 4.7e-07 59.7 39 61.5
TPR.G27005 Trifolium pratense HOM05D000368 ORTHO05D009348 4.7e-07 59.7 211 39.3
Rhsim09G0197900 Rhododendron simsii HOM05D000368 ORTHO05D009348 6.2e-07 59.3 119 37.0
Glyma.10G235200 Glycine max HOM05D000368 ORTHO05D009348 1.8e-06 57.8 42 57.1
Gohir.D12G258500 Gossypium hirsutum HOM05D000368 ORTHO05D009348 1.8e-06 57.8 121 34.7
Gorai.008G276900 Gossypium raimondii HOM05D000368 ORTHO05D009348 1.8e-06 57.8 121 34.7
PSO063G1784 Papaver somniferum HOM05D000368 ORTHO05D009348 1.8e-06 57.8 119 35.3
HPP92_006518 Vanilla planifolia HOM05D000368 ORTHO05D009348 1.8e-06 57.8 119 34.5
Aa31LG3G8750 Aethionema arabicum HOM05D000368 ORTHO05D009348 4.0e-06 56.6 296 51.4
Ciclev10005579m.g Citrus clementina HOM05D000368 ORTHO05D009348 4.0e-06 56.6 119 34.5
A10p09970 Brassica napus HOM05D000368 ORTHO05D009348 6.8e-06 55.8 31 74.2
BraA10t43080Z Brassica rapa HOM05D000368 ORTHO05D009348 6.8e-06 55.8 31 74.2
Eucgr.K00263 Eucalyptus grandis HOM05D000368 ORTHO05D009348 8.9e-06 55.5 119 34.5


User provided reference genes

Program Settings