Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 1.3e-76 289.7 146 100.0
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 4.5e-53 211.5 145 77.2
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 6.4e-52 207.6 146 76.0
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 5.5e-51 204.5 145 75.2
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 2.1e-50 202.6 145 73.8
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 3.5e-50 201.8 145 75.2
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 3.5e-50 201.8 147 74.1
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 3.5e-50 201.8 145 73.1
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 4.6e-50 201.4 145 71.7
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 6.0e-50 201.1 146 73.3
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 7.9e-50 200.7 145 72.4
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 7.9e-50 200.7 146 74.0
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 1.3e-49 199.9 147 74.8
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 1.3e-49 199.9 147 74.8
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 1.3e-49 199.9 145 71.7
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.3e-49 199.9 145 71.7
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 1.8e-49 199.5 145 73.8
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 2.3e-49 199.1 145 71.7
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 2.3e-49 199.1 145 73.1
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 3.0e-49 198.7 147 74.1
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 3.0e-49 198.7 145 75.2
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 3.0e-49 198.7 145 73.8
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 3.9e-49 198.4 145 71.0
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 3.9e-49 198.4 147 74.1
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 3.9e-49 198.4 147 74.1
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 3.9e-49 198.4 147 72.8
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 5.1e-49 198.0 148 73.0
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 5.1e-49 198.0 145 74.5
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 6.7e-49 197.6 145 73.1
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 8.7e-49 197.2 145 73.8
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 8.7e-49 197.2 146 73.3
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 8.7e-49 197.2 146 73.3
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 1.1e-48 196.8 146 71.9
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 1.1e-48 196.8 146 71.9
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 1.1e-48 196.8 145 73.1
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 1.1e-48 196.8 145 71.7
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 1.1e-48 196.8 145 71.7
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 1.5e-48 196.4 145 72.4
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 1.5e-48 196.4 148 71.6
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 1.5e-48 196.4 145 71.7
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 1.5e-48 196.4 149 72.5
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 1.9e-48 196.1 147 70.7
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 1.9e-48 196.1 145 72.4
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 2.5e-48 195.7 149 72.5
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 2.5e-48 195.7 146 72.6
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 3.3e-48 195.3 147 72.8
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 3.3e-48 195.3 149 73.2
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 3.3e-48 195.3 147 72.1
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 4.3e-48 194.9 147 71.4
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 4.3e-48 194.9 148 70.3
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 5.6e-48 194.5 147 72.1
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 5.6e-48 194.5 149 71.8
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 5.6e-48 194.5 147 73.5
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 5.6e-48 194.5 145 71.0
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 5.6e-48 194.5 158 67.7
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 7.4e-48 194.1 147 72.1
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 7.4e-48 194.1 145 72.4
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 7.4e-48 194.1 148 73.0
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 7.4e-48 194.1 146 73.3
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 7.4e-48 194.1 144 72.9
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 9.6e-48 193.7 148 69.6
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 9.6e-48 193.7 146 71.9
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 9.6e-48 193.7 147 70.7
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 1.3e-47 193.4 147 71.4
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 1.3e-47 193.4 147 72.1
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 1.3e-47 193.4 148 69.6
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 1.3e-47 193.4 147 70.7
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 1.3e-47 193.4 145 73.1
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 1.6e-47 193.0 147 71.4
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 1.6e-47 193.0 148 69.6
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 1.6e-47 193.0 146 72.6
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 1.6e-47 193.0 147 71.4
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 2.1e-47 192.6 149 70.5
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 2.1e-47 192.6 146 71.2
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 2.8e-47 192.2 147 69.4
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 2.8e-47 192.2 149 72.5
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 3.7e-47 191.8 148 69.6
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 3.7e-47 191.8 146 71.2
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 4.8e-47 191.4 146 71.2
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 6.2e-47 191.0 147 70.7
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 6.2e-47 191.0 147 70.7
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 6.2e-47 191.0 147 70.7
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 6.2e-47 191.0 145 72.4
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 8.2e-47 190.7 147 70.7
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 8.2e-47 190.7 147 70.7
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 8.2e-47 190.7 132 75.8
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 8.2e-47 190.7 146 70.5
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 1.1e-46 190.3 146 71.9
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 1.1e-46 190.3 147 70.7
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 1.8e-46 189.5 147 70.1
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 4.0e-46 188.3 146 71.9
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 5.3e-46 188.0 147 70.1
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 5.3e-46 188.0 151 72.2
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 1.5e-45 186.4 147 71.4
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 1.5e-45 186.4 130 74.6
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 2.0e-45 186.0 130 75.4
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 2.0e-45 186.0 146 71.2
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 3.4e-45 185.3 145 71.7
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 3.4e-45 185.3 148 72.3
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 5.8e-45 184.5 145 69.0
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 5.8e-45 184.5 148 68.9
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 7.6e-45 184.1 145 68.3
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 7.6e-45 184.1 146 70.5
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 1.3e-44 183.3 148 71.6
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 1.3e-44 183.3 146 69.9
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 1.3e-44 183.3 145 69.0
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 1.7e-44 183.0 147 70.7
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 1.7e-44 183.0 145 70.3
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.9e-44 182.2 147 70.7
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 2.9e-44 182.2 147 70.7
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 2.9e-44 182.2 147 70.7
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 3.8e-44 181.8 145 68.3
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 3.8e-44 181.8 145 68.3
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 3.8e-44 181.8 132 72.0
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 3.8e-44 181.8 145 68.3
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 6.5e-44 181.0 145 71.7
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 8.4e-44 180.6 145 68.3
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 8.4e-44 180.6 147 70.1
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 1.1e-43 180.3 147 70.1
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 3.2e-43 178.7 134 72.4
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 4.2e-43 178.3 145 66.9
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 4.2e-43 178.3 92 93.5
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 9.3e-43 177.2 149 65.8
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 9.3e-43 177.2 149 65.8
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 9.3e-43 177.2 149 65.8
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 9.3e-43 177.2 149 65.8
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 1.2e-42 176.8 134 69.4
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 1.6e-42 176.4 132 72.0
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 3.5e-42 175.3 150 67.3
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 6.0e-42 174.5 124 72.6
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 7.9e-42 174.1 145 67.6
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 7.9e-42 174.1 157 63.7
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 7.9e-42 174.1 129 71.3
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.3e-41 173.3 153 66.0
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 3.0e-41 172.2 126 71.4
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 3.9e-41 171.8 147 65.3
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 1.1e-40 170.2 145 64.8
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 2.5e-40 169.1 201 51.7
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 3.3e-40 168.7 144 66.7
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 2.2e-39 166.0 147 64.6
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 2.2e-39 166.0 181 56.4
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 3.7e-39 165.2 130 66.9
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 6.3e-39 164.5 134 67.2
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 6.3e-39 164.5 172 58.1
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 1.2e-37 160.2 144 63.2
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 2.0e-37 159.5 151 63.6
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 8.5e-36 154.1 87 82.8
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 7.2e-35 151.0 150 62.0
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 1.2e-34 150.2 147 61.9
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 1.2e-34 150.2 128 68.8
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 1.6e-34 149.8 125 69.6
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 3.6e-34 148.7 125 68.8
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 1.8e-33 146.4 142 62.0
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 1.1e-32 143.7 82 82.9
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 3.3e-32 142.1 117 70.9
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 2.8e-31 139.0 142 60.6
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 3.7e-31 138.7 129 66.7
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 1.1e-30 137.1 126 66.7
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 4.5e-29 131.7 136 58.1
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 2.9e-28 129.0 115 66.1
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 1.9e-27 126.3 130 57.7
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 1.4e-25 120.2 69 82.6
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 2.3e-25 119.4 112 63.4
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 7.4e-24 114.4 107 62.6
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 2.2e-23 112.8 60 86.7
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 2.4e-22 109.4 146 50.7
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 5.3e-22 108.2 103 63.1
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 1.2e-21 107.1 123 55.3
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 1.2e-21 107.1 123 55.3
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 2.6e-21 105.9 131 48.9
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 2.2e-20 102.8 83 63.9
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 2.2e-20 102.8 138 50.0
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 1.9e-19 99.8 106 60.4
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 6.1e-18 94.7 114 59.6
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 3.9e-17 92.0 45 88.9
Nitab4.5_0002077g0060 Nicotiana tabacum HOM05D003818 ORTHO05D004541 9.7e-16 87.4 150 44.7
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 1.1e-14 84.0 76 65.8
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 2.0e-13 79.7 78 62.8
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 2.6e-13 79.3 77 63.6
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 9.4e-11 70.9 81 55.6
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 1.4e-09 67.0 86 53.5
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 1.2e-08 63.9 35 88.6
AagrBONN_evm.TU.Sc2ySwM_362.1258 Anthoceros agrestis HOM05D003818 ORTHO05D004541 2.2e-07 59.7 100 46.0


User provided reference genes

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