Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.5e-162 576.2 313 100.0
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 6.5e-102 374.8 296 68.6
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 4.0e-51 206.1 207 53.6
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 4.5e-42 176.0 236 44.9
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 1.4e-32 144.4 191 41.4
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 2.7e-31 140.2 222 45.9
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 3.9e-30 136.3 222 44.6
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 8.7e-30 135.2 168 45.2
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 8.7e-30 135.2 224 44.2
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 2.5e-29 133.7 188 45.7
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 2.5e-29 133.7 189 46.6
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 5.6e-29 132.5 199 44.7
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 9.6e-29 131.7 189 45.0
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 2.1e-28 130.6 216 42.1
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 3.7e-28 129.8 187 44.9
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 3.7e-28 129.8 197 43.7
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 8.2e-28 128.6 237 37.6
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 1.1e-27 128.3 227 37.0
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 1.8e-27 127.5 247 38.5
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 2.4e-27 127.1 237 37.1
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 3.1e-27 126.7 205 44.4
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 3.1e-27 126.7 203 40.9
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 3.1e-27 126.7 212 38.7
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.0e-27 126.3 206 43.2
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.0e-27 126.3 206 43.2
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 4.0e-27 126.3 247 38.9
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 5.3e-27 125.9 220 40.9
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 5.3e-27 125.9 237 36.7
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 9.0e-27 125.2 183 42.6
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 9.0e-27 125.2 232 37.9
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 9.0e-27 125.2 196 40.8
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 9.0e-27 125.2 244 37.3
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 2.0e-26 124.0 207 40.1
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 2.6e-26 123.6 233 37.8
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 4.5e-26 122.9 193 42.0
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 5.8e-26 122.5 183 44.3
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 7.6e-26 122.1 166 45.2
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 7.6e-26 122.1 221 40.7
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 1.7e-25 120.9 252 36.1
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 2.2e-25 120.6 178 41.6
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 2.2e-25 120.6 204 38.7
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 2.9e-25 120.2 204 40.2
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 3.8e-25 119.8 202 39.1
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 6.5e-25 119.0 190 41.1
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 9.3e-24 115.2 167 42.5
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 9.3e-24 115.2 227 36.6
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 1.6e-23 114.4 225 36.9
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 1.6e-23 114.4 175 38.9
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 2.7e-23 113.6 194 38.1
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 3.5e-23 113.2 203 37.9
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 3.5e-23 113.2 249 31.3
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 6.1e-23 112.5 249 31.3
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 6.1e-23 112.5 261 35.6
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 7.9e-23 112.1 215 40.0
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 1.3e-22 111.3 206 39.8
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 1.8e-22 110.9 249 30.9
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 2.3e-22 110.5 184 40.8
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 3.0e-22 110.2 171 42.7
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 3.0e-22 110.2 171 42.7
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 3.0e-22 110.2 246 34.1
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 6.7e-22 109.0 172 38.4
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 1.1e-21 108.2 208 33.7
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 1.1e-21 108.2 189 39.7
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 1.9e-21 107.5 219 35.2
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 1.9e-21 107.5 216 37.0
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 1.9e-21 107.5 223 37.7
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 2.5e-21 107.1 224 33.9
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 7.4e-21 105.5 188 37.8
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 1.6e-20 104.4 229 37.6
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.2e-20 104.0 257 34.6
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.2e-20 104.0 257 34.6
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.8e-20 103.6 154 44.2
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 3.7e-20 103.2 207 35.7
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 3.7e-20 103.2 186 38.7
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 6.3e-20 102.4 182 38.5
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 8.2e-20 102.1 285 29.1
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.4e-19 101.3 177 39.0
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 3.1e-19 100.1 200 35.0
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 6.9e-19 99.0 123 48.0
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 2.0e-18 97.4 219 33.3
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.0e-18 97.4 219 33.3
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.6e-18 97.1 219 33.3
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 7.7e-18 95.5 218 33.5
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 1.7e-17 94.4 166 38.0
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 1.7e-17 94.4 187 35.3
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.7e-17 94.4 222 33.3
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 1.7e-17 94.4 201 35.3
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 2.2e-17 94.0 220 34.5
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 2.9e-17 93.6 125 45.6
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 2.5e-16 90.5 166 36.7
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 3.2e-16 90.1 173 37.6
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 4.2e-16 89.7 166 33.1
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 5.5e-16 89.4 167 38.3
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 9.4e-16 88.6 166 36.7
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 2.1e-15 87.4 212 34.9
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 4.6e-15 86.3 202 33.2
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 7.9e-15 85.5 212 34.4
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 7.9e-15 85.5 212 34.4
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 7.9e-15 85.5 212 34.4
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 1.0e-14 85.1 212 34.4
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 1.0e-14 85.1 212 34.4
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 3.0e-14 83.6 180 36.7
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 3.9e-14 83.2 192 34.4
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 1.1e-13 81.6 223 32.3
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 3.3e-13 80.1 114 43.0
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 3.7e-12 76.6 97 46.4
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 6.3e-12 75.9 100 45.0
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 1.4e-11 74.7 129 34.9
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.8e-11 74.3 165 30.3
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.4e-11 73.9 273 30.4
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 3.1e-11 73.6 196 29.1
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 3.1e-11 73.6 92 46.7
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 3.1e-11 73.6 179 35.8
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 6.9e-11 72.4 80 41.2
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 2.0e-10 70.9 202 27.7
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 4.5e-10 69.7 147 32.0
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 4.5e-10 69.7 199 26.6
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.0e-09 68.6 212 27.8
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.3e-09 68.2 205 29.8
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 2.2e-09 67.4 197 27.4
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 3.8e-09 66.6 198 29.3
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 3.8e-09 66.6 174 27.0
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 1.1e-08 65.1 189 29.1
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 1.9e-08 64.3 198 27.3
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.9e-08 64.3 167 25.7
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 1.9e-08 64.3 155 29.7
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 2.5e-08 63.9 203 27.1
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 2.5e-08 63.9 203 27.1
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 2.5e-08 63.9 203 27.1
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 2.5e-08 63.9 198 27.3
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 3.2e-08 63.5 191 28.8
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 3.2e-08 63.5 202 27.7
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 4.2e-08 63.2 197 26.9
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 4.2e-08 63.2 166 28.3
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 4.2e-08 63.2 166 28.3
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 4.2e-08 63.2 166 28.3
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 5.5e-08 62.8 115 35.7
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 5.5e-08 62.8 170 26.5
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 7.2e-08 62.4 179 25.7
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 7.2e-08 62.4 160 26.2
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 9.4e-08 62.0 167 27.5
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 9.4e-08 62.0 167 26.3
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 9.4e-08 62.0 166 27.1
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 9.4e-08 62.0 183 28.4
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 1.2e-07 61.6 194 28.4
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 1.6e-07 61.2 167 26.3
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 1.6e-07 61.2 116 31.0
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 1.6e-07 61.2 167 26.3
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 2.1e-07 60.8 182 26.4
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 2.1e-07 60.8 189 27.0
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 2.1e-07 60.8 167 28.1
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 2.7e-07 60.5 136 30.9
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 3.6e-07 60.1 201 27.4
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 3.6e-07 60.1 186 27.4
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 3.6e-07 60.1 201 27.4
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 3.6e-07 60.1 201 27.4
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 3.6e-07 60.1 167 24.6
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 3.6e-07 60.1 208 28.4
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 4.7e-07 59.7 198 28.8
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 4.7e-07 59.7 167 25.1
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 6.1e-07 59.3 182 25.8
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 7.9e-07 58.9 244 26.2
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 7.9e-07 58.9 93 44.1
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.0e-06 58.5 209 24.4
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 1.4e-06 58.2 93 38.7
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 1.8e-06 57.8 165 29.1
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.8e-06 57.8 181 28.2
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 1.8e-06 57.8 234 25.6
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 2.3e-06 57.4 167 25.7
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 2.3e-06 57.4 92 37.0
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 2.3e-06 57.4 167 25.7
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 3.0e-06 57.0 169 26.6
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 3.0e-06 57.0 173 26.0
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 5.1e-06 56.2 200 25.5
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 5.1e-06 56.2 185 24.9
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 6.7e-06 55.8 144 25.0
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 8.8e-06 55.5 165 28.5
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 8.8e-06 55.5 162 27.2


User provided reference genes

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