Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 0.0e+00 1851.6 940 100.0
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 1.0e-97 362.5 1001 30.9
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 1.1e-96 359.0 946 29.7
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 5.5e-96 356.7 940 28.8
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 1.6e-95 355.1 941 31.6
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 1.0e-94 352.4 992 29.9
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 8.8e-94 349.4 935 29.4
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 2.0e-93 348.2 954 29.2
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 5.7e-93 346.7 1004 30.4
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 7.5e-93 346.3 967 30.1
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 7.5e-93 346.3 921 30.6
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 9.8e-93 345.9 977 29.5
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 1.7e-92 345.1 997 30.5
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 2.8e-92 344.4 939 29.9
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 1.1e-91 342.4 919 29.2
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 4.1e-91 340.5 996 29.4
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 5.4e-91 340.1 914 29.3
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 9.1e-91 339.3 989 29.6
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 9.1e-91 339.3 943 29.4
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 1.6e-90 338.6 942 29.5
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 2.0e-90 338.2 929 28.7
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 2.0e-90 338.2 990 29.1
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 4.5e-90 337.0 977 29.5
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 4.5e-90 337.0 970 28.6
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 5.9e-90 336.7 958 29.1
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 3.8e-89 334.0 947 30.7
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 1.5e-88 332.0 1009 27.5
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 2.1e-87 328.2 983 28.9
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 3.6e-87 327.4 961 28.2
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 4.7e-87 327.0 948 28.9
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 3.0e-86 324.3 923 29.6
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 5.2e-86 323.6 935 29.4
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 7.5e-85 319.7 931 29.6
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 3.7e-84 317.4 980 28.5
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 1.1e-83 315.8 924 29.3
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 1.2e-82 312.4 903 30.5
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 1.6e-82 312.0 933 29.7
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 2.7e-82 311.2 937 28.1
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 7.8e-82 309.7 1013 28.5
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 1.0e-81 309.3 936 29.7
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 2.3e-78 298.1 922 29.1
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 4.0e-78 297.4 925 28.9
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 3.7e-76 290.8 871 30.0
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 8.3e-76 289.7 950 28.5
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 2.7e-74 284.6 976 26.9
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 1.0e-73 282.7 895 28.2
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.0e-73 282.7 1020 27.0
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 5.6e-72 276.9 908 28.2
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 2.1e-71 275.0 844 28.4
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 2.8e-71 274.6 971 26.8
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 8.0e-71 273.1 897 27.2
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 6.8e-70 270.0 813 29.3
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 6.8e-70 270.0 799 29.3
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 2.6e-69 268.1 955 27.9
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 1.7e-68 265.4 781 30.6
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 1.0e-65 256.1 1008 26.4
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 1.0e-65 256.1 826 28.0
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 2.3e-65 255.0 907 25.9
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 2.1e-63 248.4 921 27.1
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 2.1e-63 248.4 842 27.1
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 1.8e-62 245.4 785 28.0
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 5.2e-62 243.8 868 27.9
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 8.3e-60 236.5 788 29.1
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 7.1e-59 233.4 850 26.1
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 2.7e-58 231.5 717 26.2
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 6.0e-58 230.3 685 29.5
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 2.3e-57 228.4 663 30.9
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 1.2e-55 222.6 976 25.9
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 1.6e-55 222.2 772 28.8
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 1.1e-54 219.5 516 32.4
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 2.4e-54 218.4 765 28.8
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 6.4e-52 210.3 495 31.9
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 6.4e-52 210.3 833 26.5
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 2.8e-47 194.9 481 32.2
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 3.1e-46 191.4 546 31.0
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.6e-42 179.1 658 28.3
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 1.6e-39 169.1 698 27.4
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 2.1e-39 168.7 853 24.6
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 4.8e-39 167.5 416 33.4
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 3.2e-35 154.8 354 31.6
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 9.3e-35 153.3 361 27.4
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 1.1e-32 146.4 629 25.6
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.8e-30 139.0 282 33.7
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 9.0e-30 136.7 384 27.6
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 2.2e-28 132.1 207 37.2
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 2.1e-26 125.6 243 37.0
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 2.5e-24 118.6 476 27.9
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 8.2e-23 113.6 249 30.9
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 1.8e-22 112.5 178 38.8
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 2.4e-22 112.1 179 38.5
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 3.1e-22 111.7 387 27.1
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 2.7e-18 98.6 203 30.5
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 3.5e-18 98.2 258 30.6
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 1.8e-17 95.9 161 34.2
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 1.6e-15 89.4 475 22.3
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 9.0e-14 83.6 142 33.1
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 7.7e-13 80.5 150 35.3
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.2e-12 79.0 145 34.5
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 2.1e-10 72.4 128 35.9
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 4.6e-10 71.2 134 34.3
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 6.7e-09 67.4 135 33.3
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.7e-07 62.8 161 31.1
Psat0s1875g0200 Pisum sativum HOM05D002503 ORTHO05D002810 1.7e-07 62.8 285 26.7
arahy.Tifrunner.gnm1.ann1.P2NKR4 Arachis hypogaea HOM05D001219 ORTHO05D001017 2.2e-07 62.4 506 22.9
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 2.2e-07 62.4 103 34.0
Lj7C83T10 Lonicera japonica HOM05D001905 ORTHO05D001820 2.8e-07 62.0 273 26.7
FAN23G0703 Fragaria x ananassa HOM05D001905 ORTHO05D001820 4.8e-07 61.2 384 24.2
AUR62004152 Chenopodium quinoa HOM05D002503 ORTHO05D002810 6.3e-07 60.8 249 27.3
AUR62013695 Chenopodium quinoa HOM05D002503 ORTHO05D002810 6.3e-07 60.8 249 27.3
FvH4_1g16660 Fragaria vesca HOM05D001905 ORTHO05D001820 8.2e-07 60.5 384 24.2
RcHm_v2.0_Chr2g0106581 Rosa chinensis HOM05D001905 ORTHO05D001820 8.2e-07 60.5 384 23.7
Ca_25533_v3 Cicer arietinum L. HOM05D002503 ORTHO05D002810 1.4e-06 59.7 179 31.3
FAN19G0648 Fragaria x ananassa HOM05D001905 ORTHO05D001820 1.4e-06 59.7 378 23.0
Duzib264G1203 Durio zibethinus HOM05D001905 ORTHO05D001820 1.8e-06 59.3 374 22.5
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 1.8e-06 59.3 94 37.2
FAN28G0354 Fragaria x ananassa HOM05D001905 ORTHO05D001820 3.1e-06 58.5 378 23.3
FAN28G1952 Fragaria x ananassa HOM05D001905 ORTHO05D001820 3.1e-06 58.5 378 23.3
Hund17053 Selenicereus undatus HOM05D002503 ORTHO05D002810 5.3e-06 57.8 257 27.2
TPR.G9682 Trifolium pratense HOM05D001219 ORTHO05D001017 5.3e-06 57.8 360 24.4
Ciclev10025355m.g Citrus clementina HOM05D001905 ORTHO05D001820 9.1e-06 57.0 280 22.9
Medtr4g036815 Medicago truncatula HOM05D002503 ORTHO05D002810 9.1e-06 57.0 177 31.1
Psat7g261360 Pisum sativum HOM05D001219 ORTHO05D001017 9.1e-06 57.0 486 22.2


User provided reference genes

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