Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 9.6e-267 922.9 464 100.0
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 5.7e-235 817.4 470 86.6
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 2.7e-189 665.6 428 74.8
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 1.4e-188 663.3 411 78.3
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 1.8e-177 626.3 426 71.8
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 1.3e-175 620.2 409 73.8
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 1.9e-174 616.3 429 70.6
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 2.5e-174 615.9 414 73.2
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 3.3e-174 615.5 429 70.6
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 3.3e-174 615.5 409 73.3
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 4.3e-174 615.1 438 71.0
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 4.3e-174 615.1 436 70.4
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 5.6e-174 614.8 440 71.1
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 1.2e-173 613.6 465 66.9
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 1.2e-173 613.6 468 67.3
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 2.1e-173 612.8 452 68.1
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 6.2e-173 611.3 447 68.9
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 8.0e-173 610.9 444 68.2
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 8.0e-173 610.9 409 73.6
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.0e-172 610.5 441 68.5
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 1.0e-172 610.5 413 72.9
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 1.4e-172 610.1 415 72.5
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 1.4e-172 610.1 409 72.9
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 1.4e-172 610.1 409 72.4
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 2.3e-172 609.4 453 68.0
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 2.3e-172 609.4 453 68.0
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 2.3e-172 609.4 410 72.4
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 2.3e-172 609.4 420 71.4
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 4.0e-172 608.6 410 73.4
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 4.0e-172 608.6 453 67.8
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 5.2e-172 608.2 410 72.4
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 5.2e-172 608.2 411 72.3
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 8.9e-172 607.4 410 72.2
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 8.9e-172 607.4 420 71.2
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.2e-171 607.1 442 67.9
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 2.0e-171 606.3 413 71.9
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 3.4e-171 605.5 469 65.7
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 3.4e-171 605.5 415 72.0
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 3.4e-171 605.5 468 66.7
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 4.4e-171 605.1 424 69.6
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 4.4e-171 605.1 410 73.4
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 5.8e-171 604.7 410 72.4
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 5.8e-171 604.7 415 72.0
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 5.8e-171 604.7 468 66.7
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 9.8e-171 604.0 410 72.0
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 9.8e-171 604.0 410 72.7
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 1.3e-170 603.6 464 65.7
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 1.7e-170 603.2 432 68.3
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 1.7e-170 603.2 413 71.9
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 1.7e-170 603.2 413 71.7
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 1.7e-170 603.2 413 71.9
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 1.7e-170 603.2 461 67.2
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 1.7e-170 603.2 413 71.7
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 1.7e-170 603.2 443 67.7
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 1.7e-170 603.2 410 71.7
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 2.2e-170 602.8 415 72.0
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 2.2e-170 602.8 415 72.0
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 2.9e-170 602.4 413 71.9
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 2.9e-170 602.4 413 71.9
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 3.7e-170 602.1 407 71.5
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 3.7e-170 602.1 410 72.9
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 1.1e-169 600.5 444 68.5
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 1.1e-169 600.5 413 71.4
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 1.1e-169 600.5 413 71.4
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 1.1e-169 600.5 409 72.1
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 1.4e-169 600.1 410 72.0
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 1.4e-169 600.1 433 70.0
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.9e-169 599.7 410 71.5
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 1.9e-169 599.7 410 72.0
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 1.9e-169 599.7 416 71.2
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 2.4e-169 599.4 413 71.4
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 2.4e-169 599.4 409 72.1
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 3.2e-169 599.0 441 67.6
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 3.2e-169 599.0 410 71.7
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 4.1e-169 598.6 413 70.9
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 4.1e-169 598.6 409 71.4
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 4.1e-169 598.6 410 70.2
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 5.4e-169 598.2 409 71.9
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 5.4e-169 598.2 440 68.0
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 5.4e-169 598.2 410 71.7
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 7.0e-169 597.8 464 65.5
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 9.2e-169 597.4 409 70.9
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 9.2e-169 597.4 452 67.3
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 2.7e-168 595.9 413 70.7
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 2.7e-168 595.9 413 71.2
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 4.6e-168 595.1 431 69.8
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 1.0e-167 594.0 418 70.8
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 1.3e-167 593.6 441 68.5
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 1.7e-167 593.2 444 66.2
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 2.3e-167 592.8 410 71.0
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 3.0e-167 592.4 410 70.7
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 3.9e-167 592.0 444 66.0
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 6.6e-167 591.3 440 66.6
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.1e-166 590.5 427 67.9
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 1.1e-166 590.5 408 71.6
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 2.5e-166 589.3 483 64.0
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 5.6e-166 588.2 427 67.9
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 8.1e-165 584.3 463 65.0
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 1.4e-164 583.6 395 73.4
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 2.0e-163 579.7 490 60.4
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 4.9e-162 575.1 438 66.9
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 1.4e-161 573.5 432 63.4
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 4.1e-161 572.0 391 71.6
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 4.1e-161 572.0 386 72.5
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 3.0e-159 565.8 386 71.5
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 8.6e-159 564.3 399 70.2
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 4.3e-158 562.0 444 64.9
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 9.5e-158 560.8 415 68.7
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 9.5e-158 560.8 415 68.7
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 1.5e-155 553.5 414 65.9
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 9.9e-155 550.8 467 63.2
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 4.9e-154 548.5 409 66.7
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 2.8e-149 532.7 409 65.3
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 1.9e-145 520.0 478 58.2
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 1.3e-143 513.8 409 64.5
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 3.9e-143 512.3 351 71.2
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 4.3e-142 508.8 413 60.0
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 4.8e-141 505.4 425 62.6
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 1.7e-138 496.9 358 67.6
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 7.1e-137 491.5 443 59.4
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 1.9e-134 483.4 496 55.0
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.3e-130 470.7 434 57.6
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 9.0e-124 448.0 329 67.8
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 1.2e-120 437.6 374 58.6
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 2.6e-115 419.9 260 79.6
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 1.2e-112 411.0 284 72.2
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 1.9e-110 403.7 465 48.0
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 1.2e-107 394.4 582 42.4
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 2.0e-94 350.5 369 51.5
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 4.7e-80 302.8 377 45.1
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 3.2e-73 280.0 211 65.9
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.8e-68 264.2 188 68.1
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 4.1e-68 263.1 172 76.2
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 1.5e-62 244.6 177 66.7
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 7.8e-59 232.3 315 40.3
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 3.9e-58 229.9 272 48.9
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 2.0e-46 191.0 468 33.3
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 7.5e-46 189.1 117 71.8
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 3.0e-26 124.0 72 77.8
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 2.8e-24 117.5 68 77.9
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 8.1e-24 115.9 81 74.1
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 7.6e-22 109.4 117 53.8
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 1.4e-20 105.1 76 65.8
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 5.4e-20 103.2 78 57.7
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 1.1e-17 95.5 66 75.8
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 4.9e-13 80.1 59 72.9
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 8.4e-13 79.3 302 26.2
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 2.6e-06 57.8 206 28.2
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 1.0e-05 55.8 223 27.4
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 1.0e-05 55.8 159 28.3


User provided reference genes

Program Settings