Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_21470 Physcomitrium patens HOM05D001887 ORTHO05D003756 1.0e-142 510.0 248 100.0
Mapoly0022s0130 Marchantia polymorpha HOM05D001887 ORTHO05D003756 2.0e-61 240.0 193 59.6
SEGI_05481 Sequoiadendron giganteum HOM05D001887 ORTHO05D003756 2.4e-43 179.9 138 61.6
AagrBONN_evm.TU.Sc2ySwM_362.2631 Anthoceros agrestis HOM05D001887 ORTHO05D003756 6.4e-36 155.2 177 46.9
Psat2g175640 Pisum sativum HOM05D001887 ORTHO05D003756 6.7e-17 92.0 161 38.5
PSO063G1476 Papaver somniferum HOM05D001887 ORTHO05D003756 8.8e-17 91.7 158 37.3
HPP92_025743 Vanilla planifolia HOM05D001887 ORTHO05D003756 2.0e-16 90.5 168 33.3
SEGI_20203 Sequoiadendron giganteum HOM05D001887 ORTHO05D003756 7.4e-16 88.6 166 31.9
TPR.G31434 Trifolium pratense HOM05D001887 ORTHO05D003756 7.4e-16 88.6 159 37.1
CANSAT21G1847 Cannabis sativa HOM05D001887 ORTHO05D003756 1.7e-15 87.4 157 36.3
Aa31LG2G13180 Aethionema arabicum HOM05D001887 ORTHO05D003756 2.2e-15 87.0 163 35.6
Carub.0007s2433 Capsella rubella HOM05D001887 ORTHO05D003756 2.2e-15 87.0 163 35.6
Lsat_1_v5_gn_3_15401 Lactuca sativa HOM05D001887 ORTHO05D003756 2.8e-15 86.7 161 35.4
AL7G37640 Arabidopsis lyrata HOM05D001887 ORTHO05D003756 3.7e-15 86.3 191 32.5
Ca_24615_v3 Cicer arietinum L. HOM05D001887 ORTHO05D003756 3.7e-15 86.3 157 36.3
BcaC07g38035 Brassica carinata HOM05D001887 ORTHO05D003756 4.8e-15 85.9 163 34.4
MELO3C013896.2 Cucumis melo HOM05D001887 ORTHO05D003756 4.8e-15 85.9 162 35.2
TWI59G0877 Tripterygium wilfordii HOM05D001887 ORTHO05D003756 4.8e-15 85.9 143 35.0
CsaV3_3G002250 Cucumis sativus L. HOM05D001887 ORTHO05D003756 6.3e-15 85.5 162 34.6
Medtr5g013540 Medicago truncatula HOM05D001887 ORTHO05D003756 6.3e-15 85.5 159 35.8
BcaB04g18387 Brassica carinata HOM05D001887 ORTHO05D003756 8.2e-15 85.1 163 35.0
Gohir.A08G162600 Gossypium hirsutum HOM05D001887 ORTHO05D003756 8.2e-15 85.1 159 34.0
Gorai.006G214600 Gossypium raimondii HOM05D001887 ORTHO05D003756 8.2e-15 85.1 157 35.7
Glyma.01G204300 Glycine max HOM05D001887 ORTHO05D003756 1.1e-14 84.7 157 35.7
Lj2g0000600 Lotus japonicus HOM05D001887 ORTHO05D003756 1.1e-14 84.7 157 35.7
BolC8t48429H Brassica oleracea HOM05D001887 ORTHO05D003756 1.4e-14 84.3 163 34.4
Duzib205G1673 Durio zibethinus HOM05D001887 ORTHO05D003756 1.4e-14 84.3 143 36.4
Gohir.A09G197200 Gossypium hirsutum HOM05D001887 ORTHO05D003756 1.4e-14 84.3 157 35.7
Gohir.D09G191800 Gossypium hirsutum HOM05D001887 ORTHO05D003756 1.4e-14 84.3 157 35.7
Gorai.004G191600 Gossypium raimondii HOM05D001887 ORTHO05D003756 1.4e-14 84.3 143 35.0
Potri.002G139600 Populus trichocarpa HOM05D001887 ORTHO05D003756 1.4e-14 84.3 163 34.4
SHI07802 Sapria himalayana HOM05D001887 ORTHO05D003756 1.4e-14 84.3 165 33.3
Sp7g17110 Schrenkiella parvula HOM05D001887 ORTHO05D003756 1.4e-14 84.3 163 33.7
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 1.8e-14 84.0 161 34.2
Gohir.D08G182600 Gossypium hirsutum HOM05D001887 ORTHO05D003756 1.8e-14 84.0 143 34.3
COL.COLO4_06684 Corchorus olitorius HOM05D001887 ORTHO05D003756 2.4e-14 83.6 157 35.0
Glyma.18G248100 Glycine max HOM05D001887 ORTHO05D003756 2.4e-14 83.6 160 33.8
Prupe.2G121100 Prunus persica HOM05D001887 ORTHO05D003756 2.4e-14 83.6 161 35.4
BcaNung00127 Brassica carinata HOM05D001887 ORTHO05D003756 3.1e-14 83.2 163 34.4
CARHR223650 Cardamine hirsuta HOM05D001887 ORTHO05D003756 3.1e-14 83.2 163 33.7
MD07G1097200 Malus domestica HOM05D001887 ORTHO05D003756 3.1e-14 83.2 157 35.0
QL04p028582 Quercus lobata HOM05D001887 ORTHO05D003756 3.1e-14 83.2 160 33.8
BcaB04g18384 Brassica carinata HOM05D001887 ORTHO05D003756 4.1e-14 82.8 163 34.4
Thhalv10025645m.g Eutrema salsugineum HOM05D001887 ORTHO05D003756 4.1e-14 82.8 163 33.7
Glyma.11G038700 Glycine max HOM05D001887 ORTHO05D003756 4.1e-14 82.8 157 34.4
VMungo1215G1416 Vigna mungo HOM05D001887 ORTHO05D003756 4.1e-14 82.8 157 35.7
GSVIVG01018309001 Vitis vinifera HOM05D001887 ORTHO05D003756 4.1e-14 82.8 160 33.1
A01p20250 Brassica napus HOM05D001887 ORTHO05D003756 5.3e-14 82.4 163 34.4
Nitab4.5_0003335g0040 Nicotiana tabacum HOM05D001887 ORTHO05D003756 5.3e-14 82.4 161 34.8
Phvul.008G049200 Phaseolus vulgaris HOM05D001887 ORTHO05D003756 5.3e-14 82.4 160 35.6
C01p25390 Brassica napus HOM05D001887 ORTHO05D003756 6.9e-14 82.0 163 34.4
BolC1t02490H Brassica oleracea HOM05D001887 ORTHO05D003756 6.9e-14 82.0 163 34.4
HanXRQChr17g0535581 Helianthus annuus HOM05D001887 ORTHO05D003756 6.9e-14 82.0 162 34.0
AT4G17070 Arabidopsis thaliana HOM05D001887 ORTHO05D003756 9.1e-14 81.6 163 34.4
arahy.Tifrunner.gnm1.ann1.4V75MI Arachis hypogaea HOM05D001887 ORTHO05D003756 9.1e-14 81.6 160 31.2
CiPaw.14G018400 Carya illinoinensis HOM05D001887 ORTHO05D003756 9.1e-14 81.6 160 34.4
AUR62018832 Chenopodium quinoa HOM05D001887 ORTHO05D003756 9.1e-14 81.6 144 34.7
Glyma.09G245200 Glycine max HOM05D001887 ORTHO05D003756 9.1e-14 81.6 160 33.1
Lj1g0018104 Lotus japonicus HOM05D001887 ORTHO05D003756 9.1e-14 81.6 160 34.4
QL12p008613 Quercus lobata HOM05D001887 ORTHO05D003756 9.1e-14 81.6 163 33.7
Hma1.2p1_0840F.1_g226690 Hydrangea macrophylla HOM05D001887 ORTHO05D003756 1.2e-13 81.3 142 34.5
Phvul.002G002100 Phaseolus vulgaris HOM05D001887 ORTHO05D003756 1.2e-13 81.3 157 35.0
Atru.chr9.1199 Acer truncatum HOM05D001887 ORTHO05D003756 1.5e-13 80.9 143 35.0
COL.COLO4_12375 Corchorus olitorius HOM05D001887 ORTHO05D003756 1.5e-13 80.9 162 32.7
Lj8A278T25 Lonicera japonica HOM05D001887 ORTHO05D003756 1.5e-13 80.9 157 33.8
arahy.Tifrunner.gnm1.ann1.RES91D Arachis hypogaea HOM05D001887 ORTHO05D003756 2.0e-13 80.5 160 31.9
Cc08_g11220 Coffea canephora HOM05D001887 ORTHO05D003756 2.0e-13 80.5 161 33.5
Duzib084G0537 Durio zibethinus HOM05D001887 ORTHO05D003756 2.0e-13 80.5 157 33.8
RcHm_v2.0_Chr1g0345271 Rosa chinensis HOM05D001887 ORTHO05D003756 2.0e-13 80.5 160 35.0
Sabra02G0108700 Salix brachista HOM05D001887 ORTHO05D003756 2.0e-13 80.5 163 33.1
Sed0019172 Sechium edule HOM05D001887 ORTHO05D003756 2.0e-13 80.5 157 35.7
arahy.Tifrunner.gnm1.ann1.5JK48S Arachis hypogaea HOM05D001887 ORTHO05D003756 2.6e-13 80.1 160 31.2
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 2.6e-13 80.1 161 32.3
ClCG10G002160 Citrullus lanatus HOM05D001887 ORTHO05D003756 2.6e-13 80.1 161 33.5
MBI04_g38562_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D003756 2.6e-13 80.1 157 32.5
Nn1g00743 Nelumbo nucifera HOM05D001887 ORTHO05D003756 2.6e-13 80.1 160 32.5
Hund14476 Selenicereus undatus HOM05D001887 ORTHO05D003756 2.6e-13 80.1 159 34.0
THA.LOC104812738 Tarenaya hassleriana HOM05D001887 ORTHO05D003756 2.6e-13 80.1 165 32.7
TWI15G0766 Tripterygium wilfordii HOM05D001887 ORTHO05D003756 2.6e-13 80.1 157 33.8
VMungo1383G1774 Vigna mungo HOM05D001887 ORTHO05D003756 2.6e-13 80.1 170 34.1
AUR62007172 Chenopodium quinoa HOM05D001887 ORTHO05D003756 3.4e-13 79.7 158 32.3
MSTRG.27485 Avicennia marina HOM05D001887 ORTHO05D003756 4.5e-13 79.3 144 35.4
Ciclev10023925m.g Citrus clementina HOM05D001887 ORTHO05D003756 4.5e-13 79.3 162 37.0
Potri.001G150300 Populus trichocarpa HOM05D001887 ORTHO05D003756 4.5e-13 79.3 157 33.1
Thecc.03G239200 Theobroma cacao HOM05D001887 ORTHO05D003756 4.5e-13 79.3 157 34.4
CiPaw.12G056000 Carya illinoinensis HOM05D001887 ORTHO05D003756 5.9e-13 79.0 161 32.3
Dinv25139 Davidia involucrata HOM05D001887 ORTHO05D003756 5.9e-13 79.0 158 34.8
Lalb_Chr05g0214201 Lupinus albus HOM05D001887 ORTHO05D003756 5.9e-13 79.0 161 32.9
SalBow4G3207 Salvia bowleyana HOM05D001887 ORTHO05D003756 5.9e-13 79.0 147 35.4
Aqoxy7G00854 Aquilegia oxysepala HOM05D001887 ORTHO05D003756 7.7e-13 78.6 157 33.8
Potri.014G051300 Populus trichocarpa HOM05D001887 ORTHO05D003756 7.7e-13 78.6 161 32.9
AagrBONN_evm.TU.Sc2ySwM_228.5648 Anthoceros agrestis HOM05D001887 ORTHO05D003756 1.0e-12 78.2 220 28.6
CSS0038249 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D003756 1.0e-12 78.2 157 33.8
Migut.F01957 Erythranthe guttata HOM05D001887 ORTHO05D003756 1.0e-12 78.2 169 32.5
MD06G1046500 Malus domestica HOM05D001887 ORTHO05D003756 1.0e-12 78.2 157 35.7
Nitab4.5_0004227g0020 Nicotiana tabacum HOM05D001887 ORTHO05D003756 1.0e-12 78.2 161 34.2
CANSAT25G0255 Cannabis sativa HOM05D001887 ORTHO05D003756 1.3e-12 77.8 161 32.9
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 1.3e-12 77.8 161 31.7
ECA246G3991 Erigeron canadensis HOM05D001887 ORTHO05D003756 1.3e-12 77.8 161 32.3
Lalb_Chr09g0324121 Lupinus albus HOM05D001887 ORTHO05D003756 1.3e-12 77.8 162 32.1
Oeu062966.1 Olea europaea HOM05D001887 ORTHO05D003756 1.3e-12 77.8 166 33.1
Peaxi162Scf00301g00621 Petunia axillaris HOM05D001887 ORTHO05D003756 1.3e-12 77.8 161 34.2
Sed0021992 Sechium edule HOM05D001887 ORTHO05D003756 1.3e-12 77.8 143 35.7
FAN03G2304 Fragaria x ananassa HOM05D001887 ORTHO05D003756 1.7e-12 77.4 157 33.8
Lalb_Chr01g0021681 Lupinus albus HOM05D001887 ORTHO05D003756 1.7e-12 77.4 143 35.0
Medtr7g081200 Medicago truncatula HOM05D001887 ORTHO05D003756 1.7e-12 77.4 157 33.8
Psat3g099640 Pisum sativum HOM05D001887 ORTHO05D003756 1.7e-12 77.4 157 33.8
TPR.G25980 Trifolium pratense HOM05D001887 ORTHO05D003756 1.7e-12 77.4 157 34.4
ClCG05G003040 Citrullus lanatus HOM05D001887 ORTHO05D003756 2.2e-12 77.0 161 33.5
Nn6g33751 Nelumbo nucifera HOM05D001887 ORTHO05D003756 2.2e-12 77.0 143 33.6
Oeu017206.1 Olea europaea HOM05D001887 ORTHO05D003756 2.2e-12 77.0 161 32.9
Oeu040671.1 Olea europaea HOM05D001887 ORTHO05D003756 2.2e-12 77.0 161 32.9
arahy.Tifrunner.gnm1.ann1.1W2FB9 Arachis hypogaea HOM05D001887 ORTHO05D003756 2.9e-12 76.6 161 32.9
arahy.Tifrunner.gnm1.ann1.XA2ZF2 Arachis hypogaea HOM05D001887 ORTHO05D003756 2.9e-12 76.6 161 32.9
CDE12G0256 Ceratophyllum demersum HOM05D001887 ORTHO05D003756 2.9e-12 76.6 162 32.1
Sabra01G0120100 Salix brachista HOM05D001887 ORTHO05D003756 2.9e-12 76.6 157 32.5
Zm00001eb404550 Zea mays HOM05D001887 ORTHO05D003756 2.9e-12 76.6 163 34.4
Actinidia02199 Actinidia chinensis HOM05D001887 ORTHO05D003756 3.8e-12 76.3 157 34.4
PGR031G0104 Punica granatum HOM05D001887 ORTHO05D003756 3.8e-12 76.3 159 33.3
Eucgr.E00348 Eucalyptus grandis HOM05D001887 ORTHO05D003756 5.0e-12 75.9 157 32.5
Gohir.A11G074800 Gossypium hirsutum HOM05D001887 ORTHO05D003756 5.0e-12 75.9 157 31.2
Gorai.007G085200 Gossypium raimondii HOM05D001887 ORTHO05D003756 5.0e-12 75.9 157 31.2
Manes.01G089800 Manihot esculenta HOM05D001887 ORTHO05D003756 5.0e-12 75.9 143 32.2
PGR042G3895 Punica granatum HOM05D001887 ORTHO05D003756 5.0e-12 75.9 158 33.5
Prupe.5G054800 Prunus persica HOM05D001887 ORTHO05D003756 6.5e-12 75.5 157 34.4
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 6.5e-12 75.5 143 33.6
Cre02.g080850 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D003756 8.5e-12 75.1 163 35.6
MD07G1096900 Malus domestica HOM05D001887 ORTHO05D003756 8.5e-12 75.1 150 34.7
RcHm_v2.0_Chr7g0205801 Rosa chinensis HOM05D001887 ORTHO05D003756 8.5e-12 75.1 157 33.8
GSVIVG01004825001 Vitis vinifera HOM05D001887 ORTHO05D003756 8.5e-12 75.1 143 33.6
DCAR_029498 Daucus carota HOM05D001887 ORTHO05D003756 1.1e-11 74.7 138 36.2
TAR636G2628 Trochodendron aralioides HOM05D001887 ORTHO05D003756 1.1e-11 74.7 143 32.9
Rhsim11G0063300 Rhododendron simsii HOM05D001887 ORTHO05D003756 1.4e-11 74.3 150 34.7
Solyc08g077790.3 Solanum lycopersicum HOM05D001887 ORTHO05D003756 1.4e-11 74.3 161 31.1
arahy.Tifrunner.gnm1.ann1.CW5K44 Arachis hypogaea HOM05D001887 ORTHO05D003756 1.9e-11 73.9 153 31.4
MELO3C006285.2 Cucumis melo HOM05D001887 ORTHO05D003756 1.9e-11 73.9 161 30.4
FvH4_7g09211 Fragaria vesca HOM05D001887 ORTHO05D003756 1.9e-11 73.9 157 31.8
Os03g0100300 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D003756 1.9e-11 73.9 167 33.5
Sopen08g026300 Solanum pennellii HOM05D001887 ORTHO05D003756 1.9e-11 73.9 161 31.1
ATR0665G190 Amborella trichopoda HOM05D001887 ORTHO05D003756 2.5e-11 73.6 161 31.7
Sed0012793 Sechium edule HOM05D001887 ORTHO05D003756 2.5e-11 73.6 176 30.7
Ah.07g199270 Amaranthus hybridus HOM05D001887 ORTHO05D003756 3.2e-11 73.2 153 32.7
Thecc.01G400200 Theobroma cacao HOM05D001887 ORTHO05D003756 3.2e-11 73.2 157 32.5
Oeu040672.1 Olea europaea HOM05D002840 ORTHO05D003088 4.2e-11 72.8 163 33.1
Oeu040673.1 Olea europaea HOM05D002840 ORTHO05D003088 4.2e-11 72.8 163 33.1
SMO141G0008 Selaginella moellendorffii HOM05D001887 ORTHO05D003756 4.2e-11 72.8 161 30.4
PGSC0003DMG400026213 Solanum tuberosum HOM05D001887 ORTHO05D003756 4.2e-11 72.8 161 31.7
CAN.G572.15 Capsicum annuum HOM05D001887 ORTHO05D003756 5.5e-11 72.4 165 30.9
CsaV3_3G010660 Cucumis sativus L. HOM05D001887 ORTHO05D003756 5.5e-11 72.4 161 29.2
DCAR_029501 Daucus carota HOM05D001887 ORTHO05D003756 5.5e-11 72.4 138 35.5
FAN13G0539 Fragaria x ananassa HOM05D001887 ORTHO05D003756 5.5e-11 72.4 158 33.5
Rhsim11G0061800 Rhododendron simsii HOM05D001887 ORTHO05D003756 5.5e-11 72.4 150 34.0
Duzib138G1052 Durio zibethinus HOM05D001887 ORTHO05D003756 9.4e-11 71.6 157 31.2
Potri.003G083900 Populus trichocarpa HOM05D001887 ORTHO05D003756 1.2e-10 71.2 143 30.8
FAN08G2877 Fragaria x ananassa HOM05D001887 ORTHO05D003756 1.6e-10 70.9 157 33.1
FAN18G2460 Fragaria x ananassa HOM05D001887 ORTHO05D003756 2.1e-10 70.5 157 33.1
MSTRG.9151 Avicennia marina HOM05D001887 ORTHO05D003756 2.7e-10 70.1 143 33.6
Dinv43603 Davidia involucrata HOM05D001887 ORTHO05D003756 2.7e-10 70.1 157 32.5
FvH4_5g20480 Fragaria vesca HOM05D001887 ORTHO05D003756 2.7e-10 70.1 157 33.1
unitig_46.g18602 Utricularia gibba HOM05D001887 ORTHO05D003756 3.6e-10 69.7 163 31.9
HanXRQChr01g0015991 Helianthus annuus HOM05D001887 ORTHO05D003756 4.7e-10 69.3 135 34.8
Sc01g0007950 Simmondsia chinensis HOM05D001887 ORTHO05D003756 1.8e-09 67.4 157 30.6
Lalb_Chr19g0126411 Lupinus albus HOM05D001887 ORTHO05D003756 2.3e-09 67.0 136 33.8
Hma1.2p1_3159F.1_g333400 Hydrangea macrophylla HOM05D001887 ORTHO05D003756 3.9e-09 66.2 130 33.8
MCO15G017 Micromonas commoda HOM05D037749 ORTHO05D036802 3.9e-09 66.2 162 32.1
SGA_v2.0_scaffold13G06381 Striga asiatica HOM05D001887 ORTHO05D003756 3.9e-09 66.2 148 33.1
Lj9A553T47 Lonicera japonica HOM05D001887 ORTHO05D003756 8.8e-09 65.1 123 32.5
Gohir.D11G079500 Gossypium hirsutum HOM05D001887 ORTHO05D003756 1.3e-07 61.2 125 32.0
Hund11502 Selenicereus undatus HOM05D001887 ORTHO05D003756 4.8e-07 59.3 100 37.0
Nitab4.5_0003566g0030 Nicotiana tabacum HOM05D006518 ORTHO05D008270 6.3e-07 58.9 182 28.0
Nitab4.5_0000141g0290 Nicotiana tabacum HOM05D006518 ORTHO05D008270 1.1e-06 58.2 188 27.7
QL04p028706 Quercus lobata HOM05D001887 ORTHO05D003756 1.4e-06 57.8 99 35.4


User provided reference genes

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