Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_19440 Physcomitrium patens HOM05D017023 ORTHO05D308318 5.1e-99 364.4 179 100.0
Pp3c4_1940 Physcomitrium patens HOM05D017023 ORTHO05D318605 1.4e-93 346.3 179 95.0
Pp3c16_10739 Physcomitrium patens HOM05D017023 ORTHO05D316255 4.1e-93 344.7 179 94.4
Pp3c1_283 Physcomitrium patens HOM05D017023 ORTHO05D317337 4.6e-92 341.3 179 93.3
Pp3c10_11560 Physcomitrium patens HOM05D017023 ORTHO05D316765 2.5e-90 335.5 179 91.6
Pp3c16_12587 Physcomitrium patens HOM05D017023 ORTHO05D317672 6.2e-81 304.3 160 93.1
Pp3c2_18710 Physcomitrium patens HOM05D018275 ORTHO05D310270 2.6e-55 219.2 152 75.0
Pp3c2_29376 Physcomitrium patens HOM05D017023 ORTHO05D315859 7.6e-55 217.6 127 83.5
Pp3c9_12690 Physcomitrium patens HOM05D017023 ORTHO05D315602 4.3e-50 201.8 100 97.0
Pp3c4_21420 Physcomitrium patens HOM05D009896 ORTHO05D316207 3.0e-43 179.1 109 80.7
CiPaw.10G038900 Carya illinoinensis HOM05D001296 ORTHO05D003826 5.4e-08 62.0 178 25.8
Duzib168G0265 Durio zibethinus HOM05D001296 ORTHO05D002609 7.0e-08 61.6 104 32.7
QL11p009279 Quercus lobata HOM05D001296 ORTHO05D002609 9.1e-08 61.2 94 38.3
Dinv36671 Davidia involucrata HOM05D001296 ORTHO05D002609 1.2e-07 60.8 178 26.4
Eucgr.C02179 Eucalyptus grandis HOM05D001296 ORTHO05D002609 1.2e-07 60.8 179 26.8
Gohir.A03G061600 Gossypium hirsutum HOM05D001296 ORTHO05D002609 1.6e-07 60.5 104 32.7
Gohir.D03G104400 Gossypium hirsutum HOM05D001296 ORTHO05D002609 1.6e-07 60.5 104 32.7
COL.COLO4_33449 Corchorus olitorius HOM05D001296 ORTHO05D002609 2.0e-07 60.1 176 27.3
CSS0015641 Camellia sinensis var. sinensis HOM05D001296 ORTHO05D002609 2.7e-07 59.7 171 26.9
Cc03_g09760 Coffea canephora HOM05D001296 ORTHO05D002609 2.7e-07 59.7 171 28.1
Haze_27217 Corylus avellana HOM05D001296 ORTHO05D002609 2.7e-07 59.7 107 35.5
HanXRQChr05g0138911 Helianthus annuus HOM05D001296 ORTHO05D002609 2.7e-07 59.7 178 25.3
Oeu017863.1 Olea europaea HOM05D001296 ORTHO05D002609 2.7e-07 59.7 178 28.1
Manes.03G023900 Manihot esculenta HOM05D001296 ORTHO05D002609 3.5e-07 59.3 188 27.1
Sed0023452 Sechium edule HOM05D001296 ORTHO05D002609 3.5e-07 59.3 171 28.1
TAR628G1577 Trochodendron aralioides HOM05D001296 ORTHO05D002609 5.9e-07 58.5 171 27.5
Aqoxy7G02899 Aquilegia oxysepala HOM05D001296 ORTHO05D002609 7.7e-07 58.2 181 27.6
C03p11240 Brassica napus HOM05D001296 ORTHO05D002609 7.7e-07 58.2 198 26.3
Gorai.003G110200 Gossypium raimondii HOM05D001296 ORTHO05D002609 7.7e-07 58.2 104 31.7
VMungo0251G3705 Vigna mungo HOM05D001296 ORTHO05D002609 7.7e-07 58.2 176 27.3
CSS0035564 Camellia sinensis var. sinensis HOM05D001296 ORTHO05D002609 1.0e-06 57.8 176 26.7
ECA238G1562 Erigeron canadensis HOM05D001296 ORTHO05D002609 1.0e-06 57.8 178 25.3
Lsat_1_v5_gn_8_95720 Lactuca sativa HOM05D001296 ORTHO05D002609 1.0e-06 57.8 178 25.3
Sed0006373 Sechium edule HOM05D001296 ORTHO05D002609 1.0e-06 57.8 105 32.4
ClCG01G009180 Citrullus lanatus HOM05D001296 ORTHO05D002609 1.3e-06 57.4 171 28.1
Potri.006G161600 Populus trichocarpa HOM05D001296 ORTHO05D002609 1.3e-06 57.4 171 27.5
SalBow7G3828 Salvia bowleyana HOM05D001296 ORTHO05D002609 1.3e-06 57.4 177 27.7
ECA234G0562 Erigeron canadensis HOM05D001296 ORTHO05D002609 1.7e-06 57.0 171 25.1
Manes.16G112700 Manihot esculenta HOM05D001296 ORTHO05D002609 1.7e-06 57.0 171 27.5
Nn7g37941 Nelumbo nucifera HOM05D001296 ORTHO05D002609 1.7e-06 57.0 171 27.5
PGR102G1593 Punica granatum HOM05D001296 ORTHO05D002609 1.7e-06 57.0 176 27.8
TPR.G19698 Trifolium pratense HOM05D001296 ORTHO05D002609 1.7e-06 57.0 83 38.6
Ca_25545_v3 Cicer arietinum L. HOM05D001296 ORTHO05D002609 2.3e-06 56.6 178 27.0
Migut.C00444 Erythranthe guttata HOM05D001296 ORTHO05D002609 2.3e-06 56.6 178 28.1
MCO03G593 Micromonas commoda HOM05D001296 ORTHO05D002609 2.3e-06 56.6 108 30.6
Rhsim01G0122100 Rhododendron simsii HOM05D001296 ORTHO05D002609 2.3e-06 56.6 171 26.9
Rhsim10G0003200 Rhododendron simsii HOM05D001296 ORTHO05D002609 2.3e-06 56.6 171 26.9
Aqoxy2G01156 Aquilegia oxysepala HOM05D001296 ORTHO05D002609 2.9e-06 56.2 182 25.8
MSTRG.1488 Avicennia marina HOM05D001296 ORTHO05D002609 2.9e-06 56.2 178 27.5
MELO3C015712.2 Cucumis melo HOM05D001296 ORTHO05D002609 2.9e-06 56.2 172 25.0
CsaV3_7G027130 Cucumis sativus L. HOM05D001296 ORTHO05D002609 2.9e-06 56.2 172 25.0
MBI19_g18423_MAGBIO Magnolia biondii HOM05D001296 ORTHO05D002609 2.9e-06 56.2 173 25.4
PSO017G1891 Papaver somniferum HOM05D001296 ORTHO05D002609 2.9e-06 56.2 104 31.7
PGSC0003DMG400030104 Solanum tuberosum HOM05D001296 ORTHO05D002609 2.9e-06 56.2 172 26.7
Thecc.09G193300 Theobroma cacao HOM05D001296 ORTHO05D002609 2.9e-06 56.2 105 29.5
A03p09670 Brassica napus HOM05D001296 ORTHO05D002609 3.8e-06 55.8 189 25.4
BraA03t10283Z Brassica rapa HOM05D001296 ORTHO05D002609 3.8e-06 55.8 189 25.4
Carub.0003s2249 Capsella rubella HOM05D001296 ORTHO05D002609 3.8e-06 55.8 178 27.0
CDE02G1716 Ceratophyllum demersum HOM05D001296 ORTHO05D002609 3.8e-06 55.8 171 27.5
CDE02G4307 Ceratophyllum demersum HOM05D001296 ORTHO05D002609 3.8e-06 55.8 171 27.5
Lj4g0022214 Lotus japonicus HOM05D001296 ORTHO05D002609 3.8e-06 55.8 183 24.6
QL07p038125 Quercus lobata HOM05D001296 ORTHO05D002609 3.8e-06 55.8 175 28.0
Sed0010540 Sechium edule HOM05D001296 ORTHO05D002609 3.8e-06 55.8 175 28.0
Solyc05g051790.3 Solanum lycopersicum HOM05D001296 ORTHO05D002609 3.8e-06 55.8 172 26.7
Sopen05g030270 Solanum pennellii HOM05D001296 ORTHO05D002609 3.8e-06 55.8 172 26.7
GSVIVG01015349001 Vitis vinifera HOM05D001296 ORTHO05D002609 3.8e-06 55.8 171 26.9
ATR0737G047 Amborella trichopoda HOM05D001296 ORTHO05D002609 5.0e-06 55.5 176 27.8
BcaB01g04826 Brassica carinata HOM05D001296 ORTHO05D002609 5.0e-06 55.5 191 24.6
BolC3t13595H Brassica oleracea HOM05D001296 ORTHO05D002609 5.0e-06 55.5 191 24.6
CANSAT56G3212 Cannabis sativa HOM05D001296 ORTHO05D002609 5.0e-06 55.5 70 40.0
Ciclev10009504m.g Citrus clementina HOM05D001296 ORTHO05D002609 5.0e-06 55.5 171 27.5
Hma1.2p1_0001F.1_g001620 Hydrangea macrophylla HOM05D001296 ORTHO05D002609 5.0e-06 55.5 171 26.9
Hma1.2p1_0831F.1_g225390 Hydrangea macrophylla HOM05D001296 ORTHO05D002609 5.0e-06 55.5 171 26.9
Medtr5g016220 Medicago truncatula HOM05D001296 ORTHO05D002609 5.0e-06 55.5 177 28.2
Prupe.2G121300 Prunus persica HOM05D001296 ORTHO05D002609 5.0e-06 55.5 106 31.1
Sabra06G0124700 Salix brachista HOM05D001296 ORTHO05D002609 5.0e-06 55.5 171 26.9
A05p26450 Brassica napus HOM05D001296 ORTHO05D002609 6.6e-06 55.1 183 26.2
BraA05t21518Z Brassica rapa HOM05D001296 ORTHO05D002609 6.6e-06 55.1 183 26.2
CiPaw.03G228100 Carya illinoinensis HOM05D001296 ORTHO05D002609 6.6e-06 55.1 175 26.3
Lsat_1_v5_gn_5_133961 Lactuca sativa HOM05D001296 ORTHO05D002609 6.6e-06 55.1 174 27.0
Cfa001700 Carpinus fangiana HOM05D001296 ORTHO05D002609 8.6e-06 54.7 175 26.9
Cfa005770 Carpinus fangiana HOM05D001296 ORTHO05D002609 8.6e-06 54.7 175 26.9
Haze_16834 Corylus avellana HOM05D001296 ORTHO05D002609 8.6e-06 54.7 171 26.3
Dinv41638 Davidia involucrata HOM05D001296 ORTHO05D002609 8.6e-06 54.7 176 26.7
Lj9A449T50 Lonicera japonica HOM05D001296 ORTHO05D002609 8.6e-06 54.7 106 30.2
Lalb_Chr09g0330881 Lupinus albus HOM05D001296 ORTHO05D002609 8.6e-06 54.7 171 26.9
Lalb_Chr14g0371661 Lupinus albus HOM05D001296 ORTHO05D002609 8.6e-06 54.7 178 27.0
SalBow6G1313 Salvia bowleyana HOM05D001296 ORTHO05D002609 8.6e-06 54.7 181 24.3
PGSC0003DMG400019984 Solanum tuberosum HOM05D001296 ORTHO05D002609 8.6e-06 54.7 172 26.7


User provided reference genes

Program Settings