Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 0.0e+00 1488.8 756 100.0
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.6e-277 958.7 758 64.5
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.6e-277 958.7 758 64.5
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 5.9e-250 867.8 754 58.4
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 9.5e-232 807.4 732 56.1
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 3.9e-225 785.4 753 52.9
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.8e-222 776.5 754 52.0
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.4e-219 766.9 734 53.1
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 1.2e-218 763.8 750 52.0
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 4.6e-218 761.9 756 52.9
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 6.0e-218 761.5 724 53.6
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 1.3e-217 760.4 724 53.0
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.7e-217 760.0 750 50.8
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 3.9e-217 758.8 750 52.0
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.5e-216 756.1 752 52.8
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 3.3e-216 755.7 751 51.7
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 2.1e-215 753.1 738 50.7
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 2.8e-215 752.7 755 51.7
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 3.6e-215 752.3 697 54.5
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 8.1e-215 751.1 756 51.7
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.1e-214 750.7 754 52.0
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 1.4e-214 750.4 669 56.2
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 1.8e-214 750.0 723 52.7
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 5.3e-214 748.4 750 50.9
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 5.3e-214 748.4 723 52.7
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 6.9e-214 748.0 752 51.7
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 3.4e-213 745.7 720 53.3
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 3.4e-213 745.7 750 51.2
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 3.4e-213 745.7 746 52.3
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 4.4e-213 745.3 750 50.9
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 2.9e-212 742.7 720 50.7
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 2.9e-212 742.7 722 52.8
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 2.9e-212 742.7 703 53.2
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 3.8e-212 742.3 747 51.3
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 8.4e-212 741.1 718 52.4
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 1.4e-211 740.3 675 55.0
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.9e-211 740.0 761 49.3
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 2.4e-211 739.6 751 50.7
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 3.2e-211 739.2 706 52.3
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 4.2e-211 738.8 748 51.2
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 9.3e-211 737.6 746 49.9
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 1.2e-210 737.3 725 51.4
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 1.6e-210 736.9 729 50.8
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 1.6e-210 736.9 757 50.6
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.6e-210 736.9 762 50.4
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 7.8e-210 734.6 730 51.1
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 1.0e-209 734.2 720 50.3
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 2.3e-209 733.0 750 50.9
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 3.9e-209 732.3 746 50.8
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 6.6e-209 731.5 728 51.8
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 1.1e-208 730.7 737 49.7
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 1.5e-208 730.3 735 49.7
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 1.5e-208 730.3 743 51.4
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 3.3e-208 729.2 735 49.5
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 5.6e-208 728.4 740 49.5
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 9.6e-208 727.6 721 50.6
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 9.6e-208 727.6 745 49.0
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 2.8e-207 726.1 737 49.7
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 3.6e-207 725.7 737 49.5
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 1.1e-206 724.2 748 50.5
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 2.4e-206 723.0 723 50.8
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 5.3e-206 721.8 750 50.1
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 2.0e-205 719.9 758 48.8
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 1.3e-204 717.2 740 50.9
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 4.2e-203 712.2 727 49.7
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 7.1e-203 711.4 741 49.8
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 2.1e-202 709.9 735 49.0
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 7.9e-202 708.0 722 51.0
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 1.9e-200 703.4 678 52.1
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 4.3e-200 702.2 724 49.2
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 7.4e-200 701.4 725 49.5
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 9.6e-200 701.0 725 49.5
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 1.6e-199 700.3 737 48.4
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 3.7e-199 699.1 653 53.8
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 9.0e-198 694.5 744 47.8
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 9.0e-198 694.5 705 51.2
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 2.6e-197 693.0 728 47.8
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 7.6e-197 691.4 737 48.0
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 3.8e-196 689.1 720 50.8
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 5.5e-195 685.3 628 54.1
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 7.1e-195 684.9 721 49.2
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.6e-194 683.7 722 50.1
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 1.3e-193 680.6 746 48.1
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 1.9e-192 676.8 754 47.3
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 9.6e-192 674.5 757 48.3
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 2.8e-191 672.9 590 55.6
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 8.2e-191 671.4 721 49.2
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 1.8e-190 670.2 742 46.5
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.4e-190 669.8 749 48.2
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 3.1e-190 669.5 751 47.4
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 3.1e-190 669.5 749 48.2
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 1.2e-189 667.5 621 53.5
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 1.5e-189 667.2 747 49.8
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 1.4e-187 660.6 730 47.5
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 1.2e-186 657.5 746 46.5
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 2.5e-184 649.8 723 48.3
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 3.1e-182 642.9 754 47.1
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 1.5e-181 640.6 588 54.4
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 5.0e-180 635.6 615 53.0
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 8.5e-180 634.8 727 47.6
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 2.0e-176 623.6 750 45.7
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.2e-175 620.2 758 45.5
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 2.2e-175 620.2 639 49.3
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 3.7e-175 619.4 591 53.8
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 6.3e-175 618.6 685 47.9
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 6.9e-174 615.1 828 42.1
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 4.2e-171 605.9 854 42.2
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 5.5e-171 605.5 722 45.7
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 7.2e-171 605.1 698 47.4
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 2.2e-167 593.6 650 48.0
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.2e-164 583.6 583 51.3
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 5.2e-161 572.4 838 40.5
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 8.5e-156 555.1 538 51.5
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 1.1e-150 538.1 530 53.4
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 1.9e-147 527.3 772 39.8
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 1.8e-142 510.8 552 49.3
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 5.6e-139 499.2 728 40.8
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 7.2e-139 498.8 544 47.1
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 1.4e-137 494.6 528 49.8
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 9.5e-131 471.9 416 56.5
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 2.2e-127 460.7 570 43.7
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 5.6e-123 446.0 521 46.1
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 1.8e-121 441.0 424 52.6
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 3.5e-117 426.8 385 55.1
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 3.6e-106 390.2 412 49.0
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.4e-102 376.3 680 34.0
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 7.8e-101 372.5 343 53.1
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.3e-99 366.7 675 33.9
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.0e-96 357.8 662 33.1
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.6e-96 357.5 665 33.7
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 4.6e-93 346.7 332 51.8
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.3e-92 344.4 356 49.7
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.0e-88 331.3 692 31.5
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 3.2e-86 323.9 326 51.8
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.9e-83 314.7 602 31.4
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 4.3e-83 313.5 650 31.1
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 5.6e-83 313.2 660 32.4
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.5e-79 299.7 602 31.9
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 5.9e-72 276.6 269 53.2
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 3.8e-71 273.9 279 50.9
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 1.4e-70 271.9 285 47.0
Gohir.D02G179566 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.4e-70 271.9 294 47.6
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 1.5e-64 251.9 589 30.2
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 1.0e-63 249.2 233 55.4
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 5.0e-63 246.9 486 31.7
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 1.2e-53 215.7 210 51.0
Nn1g06550 Nelumbo nucifera HOM05D003674 ORTHO05D004226 7.4e-51 206.5 172 57.6
Nn1g06549 Nelumbo nucifera HOM05D003674 ORTHO05D004226 1.7e-50 205.3 211 52.1
ATR0737G184 Amborella trichopoda HOM05D003674 ORTHO05D004226 2.5e-46 191.4 205 49.8
CiPaw.04G126200 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.5e-46 191.4 204 48.0
vmacro12304 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 5.9e-40 170.2 209 42.1
Hma1.2p1_1836F.1_g304720 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.7e-37 161.4 121 64.5
MSTRG.14339 Avicennia marina HOM05D003674 ORTHO05D004226 4.7e-37 160.6 124 62.1
Nitab4.5_0000638g0270 Nicotiana tabacum HOM05D003674 ORTHO05D004226 4.7e-37 160.6 181 45.3
Oeu010988.1 Olea europaea HOM05D003674 ORTHO05D004226 8.5e-31 139.8 125 56.8
MSTRG.14344 Avicennia marina HOM05D003674 ORTHO05D004226 2.5e-30 138.3 164 44.5
Hma1.2p1_1145F.1_g261410 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 4.2e-30 137.5 122 54.1
Ca_01497_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 2.1e-29 135.2 178 42.7
CDE08G1051 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 2.3e-28 131.7 152 47.4
SHI10399 Sapria himalayana HOM05D003674 ORTHO05D004226 2.0e-27 128.6 282 31.6
PGSC0003DMG400018342 Solanum tuberosum HOM05D003674 ORTHO05D004226 2.0e-27 128.6 148 38.5
MSTRG.14335 Avicennia marina HOM05D003674 ORTHO05D004226 2.6e-27 128.3 126 49.2
Migut.H01179 Erythranthe guttata HOM05D003674 ORTHO05D004226 3.4e-27 127.9 138 45.7
SEGI_19203 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 6.3e-26 123.6 117 53.0
SEGI_23599 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 6.3e-26 123.6 83 60.2
Nitab4.5_0000512g0010 Nicotiana tabacum HOM05D003674 ORTHO05D004226 7.7e-24 116.7 133 48.1
Hma1.2p1_1836F.1_g304700 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 1.5e-22 112.5 140 44.3
Nitab4.5_0012835g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 3.3e-22 111.3 148 41.9
Peaxi162Scf00132g00118 Petunia axillaris HOM05D003674 ORTHO05D004226 1.8e-20 105.5 105 48.6
arahy.Tifrunner.gnm1.ann1.Y3H9JV Arachis hypogaea HOM05D003674 ORTHO05D004226 3.0e-20 104.8 113 40.7
MSTRG.14340 Avicennia marina HOM05D003674 ORTHO05D004226 8.9e-20 103.2 108 50.0
CBR_g41145 Chara braunii HOM05D003674 ORTHO05D004226 8.9e-20 103.2 163 31.3
Oeu010989.1 Olea europaea HOM05D003674 ORTHO05D004226 1.2e-19 102.8 148 42.6
MSTRG.14337 Avicennia marina HOM05D003674 ORTHO05D004226 2.6e-19 101.7 81 55.6
Nitab4.5_0000638g0280 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.4e-17 95.9 141 39.7
SHI10401 Sapria himalayana HOM05D003674 ORTHO05D004226 1.4e-17 95.9 95 55.8
Oeu030714.1 Olea europaea HOM05D003674 ORTHO05D004226 7.8e-16 90.1 120 45.0
SHI10406 Sapria himalayana HOM05D003674 ORTHO05D004226 1.5e-14 85.9 80 50.0
SEGI_04644 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 5.2e-12 77.4 71 52.1
Haze_13163 Corylus avellana HOM05D003674 ORTHO05D004226 4.4e-11 74.3 96 42.7
Hma1.2p1_1145F.1_g261420 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 4.9e-10 70.9 61 54.1
arahy.Tifrunner.gnm1.ann1.WCYV83 Arachis hypogaea HOM05D003674 ORTHO05D004226 8.3e-10 70.1 59 49.2
PRCOL_00001301 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 1.5e-06 59.3 294 27.6


User provided reference genes

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